Experiment set23IT012 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_06775 -5.7 -6.8 antibiotic transporter compare
PS417_06770 -5.6 -7.7 multidrug transporter compare
PS417_06375 -3.4 -1.3 deoxycytidine triphosphate deaminase compare
PS417_19940 -3.0 -12.7 membrane protein conserved
PS417_23915 -3.0 -5.3 pantoate--beta-alanine ligase compare
PS417_20130 -2.9 -12.1 dehydrogenase compare
PS417_11705 -2.6 -7.8 cyclic peptide transporter compare
PS417_26990 -2.6 -1.4 RNA pyrophosphohydrolase compare
PS417_24800 -2.6 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_09590 -2.5 -6.9 membrane protein compare
PS417_02255 -2.5 -4.0 lipopolysaccharide kinase compare
PS417_23575 -2.4 -4.7 hypothetical protein compare
PS417_13800 -2.4 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27195 -2.3 -2.2 N-acetylglutamate synthase compare
PS417_07710 -2.2 -3.6 membrane protein compare
PS417_01915 -2.2 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_02690 -2.1 -6.3 N-acylglucosamine 2-epimerase conserved
PS417_01955 -2.1 -10.4 peptidase compare
PS417_08835 -2.1 -7.7 ABC transporter conserved
PS417_16910 -2.1 -8.6 multidrug resistance protein B compare
PS417_09600 -2.1 -4.3 glycosyl transferase family 1 compare
PS417_16915 -2.0 -5.5 hemolysin D compare
PS417_01095 -2.0 -2.1 amino acid ABC transporter ATP-binding protein compare
PS417_11700 -2.0 -10.4 ligand-gated channel compare
PS417_27795 -1.9 -0.7 orotate phosphoribosyltransferase compare
PS417_16920 -1.9 -3.0 multidrug RND transporter compare
PS417_06370 -1.9 -2.1 cold-shock protein compare
PS417_04365 -1.8 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04650 -1.8 -1.0 D-alanine--D-alanine ligase compare
PS417_07140 -1.8 -4.6 peptidase M48 compare
PS417_04385 -1.8 -2.9 organic solvent ABC transporter substrate-binding protein compare
PS417_21095 -1.8 -6.4 membrane protein compare
PS417_21100 -1.8 -8.7 alpha-L-glutamate ligase compare
PS417_04390 -1.8 -3.1 toluene tolerance protein compare
PS417_02270 -1.7 -4.5 carbamoyltransferase compare
PS417_26730 -1.7 -0.9 pyrroline-5-carboxylate reductase compare
PS417_21480 -1.7 -2.0 23S rRNA pseudouridylate synthase compare
PS417_28070 -1.6 -5.1 phosphate ABC transporter ATP-binding protein compare
PS417_26985 -1.6 -8.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14065 -1.6 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01495 -1.5 -8.3 amino acid ABC transporter conserved
PS417_20125 -1.5 -4.8 phosphoribosylglycinamide formyltransferase compare
PS417_02070 -1.4 -1.4 membrane protein compare
PS417_06530 -1.4 -3.3 membrane protein compare
PS417_08840 -1.4 -5.9 serine/threonine protein kinase conserved
PS417_24835 -1.4 -3.5 hypothetical protein compare
PS417_09615 -1.4 -4.0 glycosyl transferase family 1 compare
PS417_11075 -1.4 -2.6 hydroxypyruvate isomerase compare
PS417_04220 -1.3 -1.6 4-carboxymuconolactone decarboxylase compare
PS417_05650 -1.3 -4.6 leucyl-tRNA synthetase compare
PS417_24705 -1.3 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_27605 -1.3 -4.0 hypothetical protein compare
PS417_23770 -1.3 -1.2 exodeoxyribonuclease V subunit alpha compare
PS417_18310 -1.3 -1.1 hypothetical protein compare
PS417_28080 -1.3 -8.0 phosphate ABC transporter permease compare
PS417_15075 -1.3 -6.7 NAD-glutamate dehydrogenase compare
PS417_13820 -1.3 -5.8 UDP-glucose 6-dehydrogenase compare
PS417_28515 -1.2 -2.0 16S rRNA methyltransferase compare
PS417_07560 -1.2 -1.8 universal stress protein UspA compare
PS417_04340 -1.2 -5.5 ribosome hibernation promoting factor HPF compare
PS417_23910 -1.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24615 -1.2 -0.8 hypothetical protein compare
PS417_00475 -1.2 -4.2 membrane protein compare
PS417_15975 -1.2 -2.1 glutamate carboxypeptidase compare
PS417_22840 -1.2 -1.8 tRNA-Met compare
PS417_01920 -1.2 -0.8 ATP-dependent protease subunit HslV compare
PS417_20160 -1.2 -2.6 cysteine synthase compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_09585 -1.2 -3.9 acetyltransferase compare
PS417_27290 -1.1 -1.5 hypothetical protein compare
PS417_08365 -1.1 -1.4 hypothetical protein compare
PS417_00185 -1.1 -3.1 tryptophan synthase subunit beta compare
PS417_27585 -1.1 -1.6 diaminopimelate epimerase compare
PS417_27785 -1.1 -5.1 phosphoglucomutase compare
PS417_27865 -1.1 -3.4 LysR family transcriptional regulator compare
PS417_17945 -1.1 -0.9 hypothetical protein compare
PS417_15520 -1.1 -2.2 hypothetical protein compare
PS417_09625 -1.1 -2.2 sugar ABC transporter substrate-binding protein compare
PS417_13445 -1.1 -1.9 D-aminopeptidase compare
PS417_27135 -1.1 -0.8 glutamine synthetase compare
PS417_23490 -1.0 -1.5 dihydrofolate reductase compare
PS417_08620 -1.0 -1.0 hypothetical protein compare
PS417_04595 -1.0 -2.1 cell division protein MraZ compare
PS417_15915 -1.0 -1.0 hypothetical protein compare
PS417_13790 -1.0 -4.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_14590 -1.0 -1.5 LysR family transcriptional regulator compare
PS417_04585 -1.0 -1.4 hypothetical protein compare
PS417_08380 -1.0 -3.3 ABC transporter ATP-binding protein compare
PS417_13140 -1.0 -1.8 oxidoreductase compare
PS417_26565 -1.0 -2.8 LysR family transcriptional regulator compare
PS417_09595 -1.0 -2.7 membrane protein compare
PS417_24585 -1.0 -5.8 AMP nucleosidase compare
PS417_14315 -1.0 -1.5 2,5-dioxovalerate dehydrogenase compare
PS417_06355 -0.9 -2.2 protein-L-isoaspartate O-methyltransferase compare
PS417_23105 -0.9 -1.3 hypothetical protein compare
PS417_13510 -0.9 -1.1 polyketide cyclase compare
PS417_13075 -0.9 -1.8 hypothetical protein compare
PS417_20635 -0.9 -1.2 ABC transporter ATP-binding protein compare
PS417_08420 -0.9 -2.4 lipoprotein compare
PS417_26760 -0.9 -2.5 oxidase compare
PS417_12755 -0.9 -2.5 RND transporter compare
PS417_27535 -0.9 -4.7 chemotaxis protein CheY compare
PS417_03525 -0.9 -1.6 hypothetical protein compare
PS417_03625 -0.9 -4.2 lipid A 3-O-deacylase compare
PS417_08125 -0.9 -0.4 prephenate dehydratase compare
PS417_09620 -0.9 -5.1 lipopolysaccharide biosynthesis protein compare
PS417_24780 -0.9 -5.6 peptidase C13 compare
PS417_07455 -0.9 -1.8 glutamine amidotransferase compare
PS417_05505 -0.9 -4.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_05710 -0.9 -2.7 hypothetical protein compare
PS417_13805 -0.9 -4.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_05820 -0.9 -2.6 recombinase RecX compare
PS417_11060 -0.9 -2.7 transporter compare
PS417_13795 -0.9 -3.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_27610 -0.9 -2.9 hypothetical protein compare
PS417_09325 -0.9 -2.5 peptidase S41 compare
PS417_15525 -0.9 -2.6 AraC family transcriptional regulator compare
PS417_05120 -0.9 -2.1 RNA polymerase subunit sigma-24 compare
PS417_06730 -0.8 -1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_27715 -0.8 -1.1 Fe-S oxidoreductase compare
PS417_20645 -0.8 -4.8 membrane protein compare
PS417_04375 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_20660 -0.8 -4.6 hypothetical protein compare
PS417_05045 -0.8 -3.2 acetamidase compare
PS417_13620 -0.8 -1.4 thermostable hemolysin compare
PS417_24225 -0.8 -2.0 hypothetical protein compare
PS417_06680 -0.8 -4.0 nuclease PIN compare
PS417_25310 -0.8 -3.2 hypothetical protein compare
PS417_01285 -0.8 -1.5 haloacid dehalogenase compare
PS417_06335 -0.8 -1.9 S-formylglutathione hydrolase compare
PS417_01185 -0.8 -3.4 ribosomal protein S6 modification protein compare
PS417_00220 -0.8 -1.4 hypothetical protein compare
PS417_13455 -0.8 -2.3 alkaline proteinase inhibitor compare
PS417_05595 -0.8 -4.8 ornithine carbamoyltransferase compare
PS417_28145 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_20855 -0.7 -0.9 hypothetical protein compare
PS417_28050 -0.7 -1.3 hypothetical protein compare
PS417_13175 -0.7 -1.5 iron transporter compare
PS417_02415 -0.7 -2.9 phosphoserine phosphatase compare
PS417_22535 -0.7 -4.1 ornithine acetyltransferase compare
PS417_09085 -0.7 -1.0 hypothetical protein compare
PS417_18395 -0.7 -1.5 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_22690 -0.7 -2.2 phosphogluconate dehydratase compare
PS417_11945 -0.7 -1.0 hypothetical protein compare
PS417_09605 -0.7 -1.9 glycosyl transferase compare
PS417_21845 -0.7 -2.7 membrane protein compare
PS417_27070 -0.7 -4.3 alpha/beta hydrolase compare
PS417_15710 -0.7 -2.0 nitrate reductase compare
PS417_12190 -0.7 -2.4 microcin ABC transporter ATP-binding protein compare
PS417_18355 -0.7 -4.4 DNA-binding protein compare
PS417_00440 -0.7 -3.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_15805 -0.7 -1.3 transporter compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_20720 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_28400 -0.7 -3.9 serine/threonine protein phosphatase compare
PS417_09010 -0.7 -1.6 phosphohistidine phosphatase compare
PS417_28225 -0.7 -1.1 hypothetical protein compare
PS417_01620 -0.7 -1.2 preprotein translocase subunit SecB compare
PS417_12750 -0.7 -3.0 acriflavine resistance protein B compare
PS417_05865 -0.7 -1.3 hypothetical protein compare
PS417_10040 -0.7 -0.8 MFS transporter compare
PS417_02225 -0.7 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_03465 -0.7 -1.2 type III secretion protein compare
PS417_13870 -0.7 -2.4 hypothetical protein compare
PS417_16565 -0.7 -1.5 secretin compare
PS417_14185 -0.7 -1.6 transcriptional regulator compare
PS417_03265 -0.7 -2.8 paraquat-inducible protein A compare
PS417_08310 -0.7 -2.5 alpha/beta hydrolase compare
PS417_06685 -0.7 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_02485 -0.7 -1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27870 -0.7 -1.3 ATP-dependent DNA helicase RecG compare
PS417_01045 -0.7 -2.9 RND transporter compare
PS417_12840 -0.7 -1.8 TetR family transcriptional regulator compare
PS417_22195 -0.7 -3.1 peptidase compare
PS417_23370 -0.7 -2.3 protoheme IX farnesyltransferase compare
PS417_09610 -0.7 -3.5 beta-xylosidase compare
PS417_21825 -0.7 -3.9 hydrolase compare
PS417_02845 -0.7 -1.8 ABC transporter permease compare
PS417_20340 -0.6 -1.1 hypothetical protein compare
PS417_02740 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_07655 -0.6 -1.8 glycerophosphodiester phosphodiesterase compare
PS417_20940 -0.6 -2.0 invasion protein IagB compare
PS417_20240 -0.6 -1.7 hypothetical protein compare
PS417_17120 -0.6 -1.8 protein kinase compare
PS417_20025 -0.6 -1.1 alpha-ribazole phosphatase compare
PS417_02205 -0.6 -3.2 peptide methionine sulfoxide reductase compare
PS417_07165 -0.6 -1.8 dihydrodipicolinate synthase compare
PS417_09865 -0.6 -1.3 hypothetical protein compare
PS417_20670 -0.6 -3.0 glycosyl transferase family 2 compare
PS417_11485 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_04210 -0.6 -2.7 Galactarate dehydratase (EC 4.2.1.42) (from data) compare
PS417_09740 -0.6 -1.8 RNA polymerase subunit sigma-24 compare
PS417_06125 -0.6 -1.9 hypothetical protein compare
PS417_08580 -0.6 -2.6 histidine kinase compare
PS417_21275 -0.6 -3.7 GntR family transcriptional regulator compare
PS417_01115 -0.6 -0.9 serine acetyltransferase compare
PS417_14905 -0.6 -1.8 C4-dicarboxylate ABC transporter compare
PS417_06540 -0.6 -0.9 membrane protein compare
PS417_26175 -0.6 -0.5 sarcosine oxidase subunit gamma compare


Specific Phenotypes

For 11 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms