Experiment set23IT011 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_06770 -5.0 -9.0 multidrug transporter compare
PS417_06775 -4.0 -7.1 antibiotic transporter compare
PS417_23915 -3.7 -5.4 pantoate--beta-alanine ligase compare
PS417_24800 -3.5 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_20855 -3.4 -1.9 hypothetical protein compare
PS417_19940 -3.1 -12.1 membrane protein conserved
PS417_21480 -3.0 -2.8 23S rRNA pseudouridylate synthase compare
PS417_20130 -2.7 -12.6 dehydrogenase compare
PS417_04585 -2.7 -3.0 hypothetical protein compare
PS417_09470 -2.6 -2.4 hypothetical protein compare
PS417_20635 -2.6 -2.0 ABC transporter ATP-binding protein compare
PS417_04385 -2.5 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_26990 -2.5 -1.4 RNA pyrophosphohydrolase compare
PS417_11705 -2.4 -8.5 cyclic peptide transporter compare
PS417_08125 -2.4 -0.9 prephenate dehydratase compare
PS417_09590 -2.3 -7.1 membrane protein compare
PS417_11700 -2.1 -9.9 ligand-gated channel compare
PS417_09600 -2.1 -6.2 glycosyl transferase family 1 compare
PS417_16920 -2.1 -3.7 multidrug RND transporter compare
PS417_28070 -2.1 -6.8 phosphate ABC transporter ATP-binding protein compare
PS417_16915 -2.1 -6.0 hemolysin D compare
PS417_07710 -2.1 -3.1 membrane protein compare
PS417_06530 -2.0 -3.5 membrane protein compare
PS417_27865 -2.0 -4.0 LysR family transcriptional regulator compare
PS417_02690 -2.0 -4.9 N-acylglucosamine 2-epimerase conserved
PS417_16910 -2.0 -5.5 multidrug resistance protein B compare
PS417_23575 -1.9 -5.1 hypothetical protein compare
PS417_09595 -1.8 -6.3 membrane protein compare
PS417_04650 -1.8 -1.0 D-alanine--D-alanine ligase compare
PS417_04390 -1.8 -2.6 toluene tolerance protein compare
PS417_27795 -1.8 -0.7 orotate phosphoribosyltransferase compare
PS417_22690 -1.8 -5.0 phosphogluconate dehydratase compare
PS417_01495 -1.7 -8.6 amino acid ABC transporter conserved
PS417_08840 -1.7 -6.5 serine/threonine protein kinase conserved
PS417_20160 -1.7 -3.8 cysteine synthase compare
PS417_08835 -1.7 -6.5 ABC transporter conserved
PS417_24615 -1.6 -1.1 hypothetical protein compare
PS417_01955 -1.6 -8.5 peptidase compare
PS417_23360 -1.6 -1.4 hypothetical protein compare
PS417_02255 -1.6 -2.7 lipopolysaccharide kinase compare
PS417_26985 -1.6 -7.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02485 -1.6 -4.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24835 -1.5 -5.3 hypothetical protein compare
PS417_23910 -1.5 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_21100 -1.5 -5.7 alpha-L-glutamate ligase compare
PS417_24895 -1.5 -1.9 hypothetical protein compare
PS417_17945 -1.5 -1.1 hypothetical protein compare
PS417_27605 -1.5 -5.1 hypothetical protein compare
PS417_07560 -1.4 -2.1 universal stress protein UspA compare
PS417_17215 -1.4 -2.5 peptidylprolyl isomerase compare
PS417_01095 -1.4 -2.1 amino acid ABC transporter ATP-binding protein compare
PS417_26770 -1.4 -3.0 tRNA (guanine-N7)-methyltransferase compare
PS417_21095 -1.4 -6.5 membrane protein conserved
PS417_06245 -1.4 -1.8 zinc metallopeptidase RseP compare
PS417_01620 -1.4 -2.5 preprotein translocase subunit SecB compare
PS417_02070 -1.3 -1.3 membrane protein compare
PS417_09625 -1.3 -3.6 sugar ABC transporter substrate-binding protein compare
PS417_09615 -1.3 -3.8 glycosyl transferase family 1 compare
PS417_06895 -1.3 -2.6 DNA-binding protein compare
PS417_28080 -1.3 -7.5 phosphate ABC transporter permease compare
PS417_14065 -1.3 -7.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19520 -1.2 -2.7 transcriptional regulator compare
PS417_07140 -1.2 -3.7 peptidase M48 compare
PS417_27195 -1.2 -1.5 N-acetylglutamate synthase compare
PS417_03525 -1.2 -1.9 hypothetical protein compare
PS417_23775 -1.2 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_23950 -1.2 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_22840 -1.1 -1.9 tRNA-Met compare
PS417_12755 -1.1 -3.6 RND transporter compare
PS417_24585 -1.1 -6.7 AMP nucleosidase compare
PS417_06370 -1.1 -1.9 cold-shock protein compare
PS417_04340 -1.1 -4.7 ribosome hibernation promoting factor HPF compare
PS417_06375 -1.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_04595 -1.1 -2.2 cell division protein MraZ compare
PS417_21360 -1.1 -1.4 termination factor Rho compare
PS417_24115 -1.1 -1.5 hypothetical protein compare
PS417_13800 -1.1 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22810 -1.1 -1.9 DNA base-flipping protein YbaZ compare
PS417_27300 -1.1 -0.9 cell division protein ZapA compare
PS417_00725 -1.1 -4.4 RND transporter compare
PS417_22535 -1.1 -4.0 ornithine acetyltransferase compare
PS417_13140 -1.0 -2.1 oxidoreductase compare
PS417_08380 -1.0 -3.3 ABC transporter ATP-binding protein compare
PS417_28225 -1.0 -1.4 hypothetical protein compare
PS417_23770 -1.0 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_20125 -1.0 -2.7 phosphoribosylglycinamide formyltransferase compare
PS417_09585 -1.0 -3.7 acetyltransferase compare
PS417_02385 -1.0 -1.4 esterase compare
PS417_15075 -1.0 -6.2 NAD-glutamate dehydrogenase compare
PS417_11945 -1.0 -1.4 hypothetical protein compare
PS417_19065 -1.0 -1.0 monooxygenase compare
PS417_24225 -0.9 -2.2 hypothetical protein compare
PS417_24135 -0.9 -1.9 hypothetical protein compare
PS417_02270 -0.9 -2.8 carbamoyltransferase compare
PS417_24780 -0.9 -6.6 peptidase C13 compare
PS417_28400 -0.9 -4.1 serine/threonine protein phosphatase compare
PS417_17070 -0.9 -1.9 RNA polymerase subunit sigma-24 compare
PS417_06600 -0.9 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_08685 -0.9 -1.4 flagellar hook-length control protein FliK compare
PS417_26175 -0.9 -1.1 sarcosine oxidase subunit gamma compare
PS417_13805 -0.9 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_09605 -0.9 -1.5 glycosyl transferase compare
PS417_11455 -0.9 -1.8 hypothetical protein compare
PS417_12375 -0.9 -2.1 serine/threonine protein phosphatase compare
PS417_03560 -0.9 -1.2 GTP-binding protein compare
PS417_27070 -0.9 -4.9 alpha/beta hydrolase compare
PS417_05650 -0.9 -2.2 leucyl-tRNA synthetase compare
PS417_09620 -0.9 -5.0 lipopolysaccharide biosynthesis protein compare
PS417_26470 -0.8 -1.8 cytochrome C compare
PS417_15525 -0.8 -3.3 AraC family transcriptional regulator compare
PS417_12595 -0.8 -1.6 transcriptional regulator compare
PS417_27065 -0.8 -3.0 hypothetical protein compare
PS417_21400 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_04530 -0.8 -1.9 glycerate dehydrogenase compare
PS417_27610 -0.8 -4.5 hypothetical protein compare
PS417_13870 -0.8 -1.9 hypothetical protein compare
PS417_14455 -0.8 -2.4 polyketide cyclase compare
PS417_00180 -0.8 -1.8 tryptophan synthase subunit alpha compare
PS417_10995 -0.8 -2.0 GntR family transcriptional regulator compare
PS417_03940 -0.8 -3.3 membrane protein compare
PS417_13305 -0.8 -1.3 hypothetical protein compare
PS417_15540 -0.8 -0.8 NUDIX hydrolase compare
PS417_05595 -0.8 -4.7 ornithine carbamoyltransferase compare
PS417_19270 -0.8 -1.6 hypothetical protein compare
PS417_10535 -0.8 -2.1 hypothetical protein compare
PS417_20610 -0.8 -1.0 hypothetical protein compare
PS417_11125 -0.8 -2.6 hypothetical protein compare
PS417_07165 -0.8 -1.7 dihydrodipicolinate synthase compare
PS417_04305 -0.8 -1.2 aspartate ammonia-lyase compare
PS417_04300 -0.8 -2.3 FagA protein compare
PS417_26335 -0.8 -1.5 BetI family transcriptional regulator compare
PS417_20340 -0.8 -1.9 hypothetical protein compare
PS417_14905 -0.8 -1.5 C4-dicarboxylate ABC transporter compare
PS417_21015 -0.8 -2.0 EstX protein compare
PS417_22445 -0.8 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_01195 -0.8 -1.8 RNA-binding protein S4 compare
PS417_02720 -0.8 -0.7 TetR family transcriptional regulator compare
PS417_13795 -0.7 -3.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_08540 -0.7 -1.8 RNA helicase compare
PS417_00485 -0.7 -1.9 ABC transporter permease compare
PS417_03625 -0.7 -3.4 lipid A 3-O-deacylase compare
PS417_21825 -0.7 -4.2 hydrolase compare
PS417_15520 -0.7 -2.2 hypothetical protein compare
PS417_04980 -0.7 -2.6 response regulator receiver protein compare
PS417_10275 -0.7 -0.9 histidine kinase compare
PS417_08365 -0.7 -1.0 hypothetical protein compare
PS417_04010 -0.7 -3.1 glycine/betaine ABC transporter ATP-binding protein compare
PS417_17630 -0.7 -2.2 RNA polymerase sigma factor compare
PS417_19500 -0.7 -1.7 antibiotic synthesis protein MbtH compare
PS417_20645 -0.7 -4.5 membrane protein compare
PS417_27515 -0.7 -2.8 heme biosynthesis protein HemY compare
PS417_25290 -0.7 -2.0 hypothetical protein compare
PS417_15805 -0.7 -1.4 transporter compare
PS417_20670 -0.7 -3.4 glycosyl transferase family 2 compare
PS417_09630 -0.7 -3.3 glycosyl transferase compare
PS417_27295 -0.7 -3.0 hypothetical protein compare
PS417_14235 -0.7 -1.8 hypothetical protein compare
PS417_16490 -0.7 -0.8 cell division protein FtsK compare
PS417_04055 -0.7 -2.9 peptide transporter compare
PS417_05610 -0.7 -2.2 bacterioferritin compare
PS417_05235 -0.7 -1.7 peptidase inhibitor I42 compare
PS417_07770 -0.7 -1.3 hypothetical protein compare
PS417_13885 -0.7 -1.5 chemotaxis protein CheY compare
PS417_08420 -0.7 -3.6 lipoprotein compare
PS417_21275 -0.7 -4.6 GntR family transcriptional regulator compare
PS417_02000 -0.7 -3.9 glutamate synthase compare
PS417_08945 -0.7 -3.5 heat shock protein 90 compare
PS417_22825 -0.7 -2.2 hypothetical protein compare
PS417_00185 -0.7 -2.0 tryptophan synthase subunit beta compare
PS417_21760 -0.7 -1.2 hypothetical protein compare
PS417_06355 -0.7 -2.0 protein-L-isoaspartate O-methyltransferase compare
PS417_05365 -0.7 -0.9 FAD-binding protein compare
PS417_27435 -0.7 -2.7 polyphosphate kinase compare
PS417_09930 -0.6 -0.6 hypothetical protein compare
PS417_14655 -0.6 -0.9 lysine transporter LysE compare
PS417_12005 -0.6 -2.4 hypothetical protein compare
PS417_17550 -0.6 -1.7 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_09655 -0.6 -1.3 RNA polymerase sigma factor compare
PS417_25975 -0.6 -3.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_20930 -0.6 -3.4 50S rRNA methyltransferase compare
PS417_17390 -0.6 -1.9 DSBA oxidoreductase compare
PS417_04180 -0.6 -1.9 GntR family transcriptional regulator compare
PS417_18425 -0.6 -1.1 sporulation protein compare
PS417_27125 -0.6 -3.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_12355 -0.6 -1.2 magnesium chelatase compare
PS417_00475 -0.6 -2.1 membrane protein compare
PS417_27945 -0.6 -1.0 type VI secretion protein ImpA compare
PS417_01280 -0.6 -1.3 peptidoglycan-binding protein LysM compare
PS417_07655 -0.6 -2.1 glycerophosphodiester phosphodiesterase compare
PS417_16475 -0.6 -2.4 camphor resistance protein CrcB compare
PS417_02675 -0.6 -1.4 ABC transporter ATP-binding protein compare
PS417_04500 -0.6 -0.9 hypothetical protein compare
PS417_19090 -0.6 -1.4 hypothetical protein compare
PS417_08620 -0.6 -0.7 hypothetical protein compare
PS417_19705 -0.6 -1.7 flagellar biosynthesis regulator FlhF compare
PS417_05860 -0.6 -2.1 hypothetical protein compare
PS417_16185 -0.6 -1.8 hypothetical protein compare
PS417_27155 -0.6 -0.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_13820 -0.6 -1.9 UDP-glucose 6-dehydrogenase compare
PS417_13655 -0.6 -2.0 xylulose kinase compare


Specific Phenotypes

For 11 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms