Experiment set23IT010 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_06770 -4.3 -6.7 multidrug transporter compare
PS417_02255 -4.2 -2.8 lipopolysaccharide kinase compare
PS417_06775 -4.1 -6.4 antibiotic transporter compare
PS417_19940 -3.6 -10.9 membrane protein conserved
PS417_24800 -3.2 -7.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_23915 -3.1 -5.5 pantoate--beta-alanine ligase compare
PS417_02690 -2.8 -7.6 N-acylglucosamine 2-epimerase conserved
PS417_04380 -2.6 -1.6 ABC transporter permease compare
PS417_26990 -2.6 -1.3 RNA pyrophosphohydrolase compare
PS417_20130 -2.5 -13.7 dehydrogenase compare
PS417_04385 -2.4 -3.2 organic solvent ABC transporter substrate-binding protein compare
PS417_16910 -2.4 -8.0 multidrug resistance protein B compare
PS417_09600 -2.3 -5.3 glycosyl transferase family 1 compare
PS417_16920 -2.3 -6.9 multidrug RND transporter compare
PS417_23775 -2.3 -3.4 exodeoxyribonuclease V subunit beta compare
PS417_22450 -2.2 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_11705 -2.2 -8.1 cyclic peptide transporter compare
PS417_20160 -2.2 -4.0 cysteine synthase compare
PS417_01955 -2.1 -9.4 peptidase compare
PS417_27815 -2.1 -2.2 hypothetical protein compare
PS417_02280 -2.0 -1.6 GlcNAc-PI de-N-acetylase compare
PS417_07710 -2.0 -3.7 membrane protein compare
PS417_11700 -2.0 -10.7 ligand-gated channel compare
PS417_09590 -2.0 -5.4 membrane protein compare
PS417_24835 -1.9 -4.4 hypothetical protein compare
PS417_24745 -1.9 -3.3 gamma-glutamyl phosphate reductase compare
PS417_27795 -1.9 -0.7 orotate phosphoribosyltransferase compare
PS417_08835 -1.9 -7.7 ABC transporter conserved
PS417_21095 -1.8 -10.2 membrane protein compare
PS417_01495 -1.7 -10.8 amino acid ABC transporter conserved
PS417_28070 -1.7 -10.3 phosphate ABC transporter ATP-binding protein compare
PS417_22690 -1.7 -3.4 phosphogluconate dehydratase compare
PS417_13800 -1.7 -3.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06530 -1.6 -3.5 membrane protein compare
PS417_04390 -1.6 -2.1 toluene tolerance protein compare
PS417_16915 -1.6 -5.8 hemolysin D compare
PS417_21480 -1.6 -2.1 23S rRNA pseudouridylate synthase compare
PS417_20635 -1.6 -1.7 ABC transporter ATP-binding protein compare
PS417_09595 -1.6 -6.1 membrane protein compare
PS417_09470 -1.6 -1.7 hypothetical protein compare
PS417_07140 -1.5 -3.0 peptidase M48 compare
PS417_21100 -1.5 -6.9 alpha-L-glutamate ligase compare
PS417_09615 -1.5 -5.0 glycosyl transferase family 1 compare
PS417_06895 -1.5 -3.0 DNA-binding protein compare
PS417_20125 -1.5 -3.5 phosphoribosylglycinamide formyltransferase compare
PS417_26985 -1.5 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08840 -1.4 -6.2 serine/threonine protein kinase conserved
PS417_06370 -1.4 -2.0 cold-shock protein compare
PS417_04585 -1.4 -2.2 hypothetical protein compare
PS417_14065 -1.4 -7.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24370 -1.4 -1.2 (2Fe-2S)-binding protein compare
PS417_24615 -1.4 -0.9 hypothetical protein compare
PS417_08380 -1.3 -4.4 ABC transporter ATP-binding protein compare
PS417_02485 -1.3 -3.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27870 -1.3 -2.8 ATP-dependent DNA helicase RecG compare
PS417_23575 -1.3 -4.0 hypothetical protein compare
PS417_26605 -1.3 -1.4 malonate decarboxylase subunit beta compare
PS417_28080 -1.3 -7.8 phosphate ABC transporter permease compare
PS417_02070 -1.3 -1.3 membrane protein compare
PS417_13870 -1.2 -4.6 hypothetical protein compare
PS417_05325 -1.2 -1.9 fimbrial protein compare
PS417_27195 -1.2 -1.4 N-acetylglutamate synthase compare
PS417_23910 -1.2 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_21400 -1.2 -4.7 TetR family transcriptional regulator compare
PS417_13795 -1.2 -5.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_01620 -1.1 -1.3 preprotein translocase subunit SecB compare
PS417_27865 -1.1 -3.1 LysR family transcriptional regulator compare
PS417_04365 -1.1 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_09625 -1.1 -2.6 sugar ABC transporter substrate-binding protein compare
PS417_02270 -1.1 -3.4 carbamoyltransferase compare
PS417_24705 -1.1 -2.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_08420 -1.1 -5.2 lipoprotein compare
PS417_15520 -1.1 -2.0 hypothetical protein compare
PS417_09585 -1.1 -5.9 acetyltransferase compare
PS417_17215 -1.1 -1.9 peptidylprolyl isomerase compare
PS417_13075 -1.0 -2.0 hypothetical protein compare
PS417_24525 -1.0 -2.1 nuclease compare
PS417_05595 -1.0 -5.7 ornithine carbamoyltransferase compare
PS417_07165 -1.0 -2.4 dihydrodipicolinate synthase compare
PS417_27605 -1.0 -4.6 hypothetical protein compare
PS417_20985 -1.0 -0.7 porin compare
PS417_28050 -1.0 -2.4 hypothetical protein compare
PS417_16490 -1.0 -1.3 cell division protein FtsK compare
PS417_10985 -1.0 -1.1 NADH:flavin oxidoreductase compare
PS417_08410 -1.0 -2.2 hypothetical protein compare
PS417_24780 -1.0 -6.4 peptidase C13 compare
PS417_15075 -0.9 -4.7 NAD-glutamate dehydrogenase compare
PS417_06375 -0.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_26260 -0.9 -1.7 hypothetical protein compare
PS417_27785 -0.9 -4.5 phosphoglucomutase compare
PS417_27070 -0.9 -5.1 alpha/beta hydrolase compare
PS417_00185 -0.9 -2.9 tryptophan synthase subunit beta compare
PS417_09620 -0.9 -5.1 lipopolysaccharide biosynthesis protein compare
PS417_18355 -0.9 -3.8 DNA-binding protein compare
PS417_15135 -0.9 -1.5 hypothetical protein compare
PS417_24585 -0.9 -5.3 AMP nucleosidase compare
PS417_18990 -0.9 -2.2 membrane protein compare
PS417_21825 -0.9 -6.7 hydrolase compare
PS417_17840 -0.8 -1.7 betaine-aldehyde dehydrogenase compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_27290 -0.8 -1.1 hypothetical protein compare
PS417_26730 -0.8 -0.5 pyrroline-5-carboxylate reductase compare
PS417_05650 -0.8 -2.3 leucyl-tRNA synthetase compare
PS417_13895 -0.8 -3.5 chemotaxis protein CheB compare
PS417_22535 -0.8 -3.5 ornithine acetyltransferase compare
PS417_21180 -0.8 -3.4 short-chain dehydrogenase compare
PS417_17440 -0.8 -1.6 beta-lactamase compare
PS417_16195 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_27610 -0.8 -3.7 hypothetical protein compare
PS417_13820 -0.8 -3.7 UDP-glucose 6-dehydrogenase compare
PS417_28225 -0.8 -1.2 hypothetical protein compare
PS417_05510 -0.8 -3.0 alpha/beta hydrolase compare
PS417_17645 -0.8 -1.2 RND transporter compare
PS417_26760 -0.8 -3.4 oxidase compare
PS417_04300 -0.8 -2.4 FagA protein compare
PS417_13805 -0.8 -4.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_04705 -0.8 -1.3 hypothetical protein compare
PS417_25975 -0.8 -4.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_15510 -0.8 -1.7 hypothetical protein compare
PS417_20645 -0.8 -4.9 membrane protein compare
PS417_05235 -0.7 -2.0 peptidase inhibitor I42 compare
PS417_22195 -0.7 -2.8 peptidase compare
PS417_00180 -0.7 -1.8 tryptophan synthase subunit alpha compare
PS417_16560 -0.7 -2.0 GNAT family acetyltransferase compare
PS417_15710 -0.7 -1.1 nitrate reductase compare
PS417_19620 -0.7 -1.3 hypothetical protein compare
PS417_04340 -0.7 -2.3 ribosome hibernation promoting factor HPF compare
PS417_25180 -0.7 -3.3 hypothetical protein compare
PS417_04185 -0.7 -1.8 hypothetical protein compare
PS417_27065 -0.7 -3.1 hypothetical protein compare
PS417_08650 -0.7 -1.2 transcriptional regulator compare
PS417_16400 -0.7 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_01270 -0.7 -1.7 iron ABC transporter substrate-binding protein compare
PS417_18360 -0.7 -1.7 hypothetical protein compare
PS417_09235 -0.7 -0.8 molecular chaperone compare
PS417_01195 -0.7 -1.8 RNA-binding protein S4 compare
PS417_13375 -0.7 -4.2 LysR family transcriptional regulator compare
PS417_02225 -0.7 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23770 -0.7 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_16715 -0.7 -1.2 DoxX family protein compare
PS417_13620 -0.7 -0.9 thermostable hemolysin compare
PS417_21015 -0.7 -2.0 EstX protein compare
PS417_19240 -0.7 -2.9 peptidase M42 compare
PS417_15800 -0.7 -4.0 photosynthetic protein synthase I compare
PS417_13990 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_15375 -0.7 -2.9 peptidoglycan-binding protein compare
PS417_20825 -0.7 -1.9 drug:proton antiporter compare
PS417_23380 -0.7 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_13790 -0.7 -2.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_08045 -0.7 -1.4 uracil permease compare
PS417_28400 -0.7 -3.4 serine/threonine protein phosphatase compare
PS417_02560 -0.7 -0.9 23S rRNA methyltransferase compare
PS417_02160 -0.7 -1.0 hypothetical protein compare
PS417_23150 -0.7 -1.3 Cro/Cl family transcriptional regulator compare
PS417_27295 -0.7 -2.9 hypothetical protein compare
PS417_00725 -0.7 -2.5 RND transporter compare
PS417_15745 -0.7 -1.7 lipid carrier protein compare
PS417_05505 -0.7 -3.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_12355 -0.7 -1.4 magnesium chelatase compare
PS417_15525 -0.7 -3.0 AraC family transcriptional regulator compare
PS417_26550 -0.6 -1.8 ABC transporter compare
PS417_20670 -0.6 -3.5 glycosyl transferase family 2 compare
PS417_16310 -0.6 -3.0 membrane protein compare
PS417_10575 -0.6 -1.4 DNA alkylation repair protein compare
PS417_00975 -0.6 -1.1 hypothetical protein compare
PS417_08540 -0.6 -1.6 RNA helicase compare
PS417_07565 -0.6 -1.4 hypothetical protein compare
PS417_22445 -0.6 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_17160 -0.6 -2.1 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_01550 -0.6 -3.5 cell envelope biogenesis protein AsmA compare
PS417_19520 -0.6 -1.5 transcriptional regulator compare
PS417_17155 -0.6 -2.0 cytochrome B561 compare
PS417_04735 -0.6 -3.3 LysR family transcriptional regulator compare
PS417_02740 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_16520 -0.6 -1.6 cold-shock protein compare
PS417_17590 -0.6 -1.3 ABC transporter substrate-binding protein compare
PS417_12610 -0.6 -1.5 RNA polymerase sigma factor compare
PS417_19275 -0.6 -1.0 hypothetical protein compare
PS417_10695 -0.6 -2.0 decarboxylase compare
PS417_11280 -0.6 -2.1 HxcX atypical pseudopilin compare
PS417_05065 -0.6 -1.0 hypothetical protein compare
PS417_06730 -0.6 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01780 -0.6 -2.9 proline iminopeptidase compare
PS417_03380 -0.6 -0.9 hypothetical protein compare
PS417_03625 -0.6 -2.9 lipid A 3-O-deacylase compare
PS417_00440 -0.6 -3.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_24710 -0.6 -3.2 lipoprotein compare
PS417_03430 -0.6 -2.3 methyltransferase type 11 compare
PS417_00715 -0.6 -2.7 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) compare
PS417_10995 -0.6 -1.7 GntR family transcriptional regulator compare
PS417_02395 -0.6 -2.3 DNA topoisomerase IV subunit B compare
PS417_18020 -0.6 -1.0 hypothetical protein compare
PS417_05025 -0.6 -1.3 maleylacetoacetate isomerase compare
PS417_13455 -0.6 -1.4 alkaline proteinase inhibitor compare
PS417_19095 -0.6 -1.2 hypothetical protein compare
PS417_00195 -0.6 -1.2 hypothetical protein compare
PS417_17630 -0.6 -1.8 RNA polymerase sigma factor compare
PS417_09330 -0.6 -1.2 NAD(P)H-quinone oxidoreductase compare
PS417_01795 -0.6 -3.7 glucosyltransferase MdoH compare
PS417_14280 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms