Experiment set23IT009 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_23915 -4.6 -6.5 pantoate--beta-alanine ligase compare
PS417_02690 -3.8 -8.0 N-acylglucosamine 2-epimerase conserved
PS417_06770 -3.7 -7.1 multidrug transporter compare
PS417_24800 -3.7 -5.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_19940 -3.5 -12.6 membrane protein conserved
PS417_06775 -3.5 -4.8 antibiotic transporter compare
PS417_02255 -3.0 -4.1 lipopolysaccharide kinase compare
PS417_16920 -2.5 -5.8 multidrug RND transporter compare
PS417_04380 -2.4 -1.5 ABC transporter permease compare
PS417_24615 -2.4 -1.8 hypothetical protein compare
PS417_08125 -2.3 -0.9 prephenate dehydratase compare
PS417_09615 -2.3 -5.3 glycosyl transferase family 1 compare
PS417_09600 -2.3 -6.6 glycosyl transferase family 1 compare
PS417_09590 -2.3 -5.6 membrane protein compare
PS417_20130 -2.3 -10.5 dehydrogenase compare
PS417_20635 -2.2 -1.8 ABC transporter ATP-binding protein compare
PS417_11705 -2.1 -7.3 cyclic peptide transporter compare
PS417_23575 -2.1 -3.7 hypothetical protein compare
PS417_09595 -2.1 -5.6 membrane protein compare
PS417_24835 -1.9 -5.8 hypothetical protein compare
PS417_16915 -1.9 -5.8 hemolysin D compare
PS417_08835 -1.9 -8.3 ABC transporter conserved
PS417_22690 -1.8 -2.9 phosphogluconate dehydratase compare
PS417_16910 -1.8 -5.3 multidrug resistance protein B compare
PS417_07710 -1.8 -3.2 membrane protein compare
PS417_11700 -1.8 -10.5 ligand-gated channel compare
PS417_28070 -1.8 -9.1 phosphate ABC transporter ATP-binding protein compare
PS417_04650 -1.8 -0.9 D-alanine--D-alanine ligase compare
PS417_27795 -1.8 -0.6 orotate phosphoribosyltransferase compare
PS417_02485 -1.7 -4.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08840 -1.7 -6.6 serine/threonine protein kinase conserved
PS417_13455 -1.6 -3.0 alkaline proteinase inhibitor compare
PS417_26175 -1.6 -1.5 sarcosine oxidase subunit gamma compare
PS417_26695 -1.6 -1.5 uracil phosphoribosyltransferase compare
PS417_01955 -1.6 -7.7 peptidase compare
PS417_07140 -1.6 -2.4 peptidase M48 compare
PS417_09585 -1.5 -7.4 acetyltransferase compare
PS417_21100 -1.5 -6.9 alpha-L-glutamate ligase compare
PS417_01495 -1.4 -8.8 amino acid ABC transporter conserved
PS417_27315 -1.4 -1.6 hypothetical protein compare
PS417_20125 -1.4 -3.7 phosphoribosylglycinamide formyltransferase compare
PS417_06530 -1.4 -2.9 membrane protein compare
PS417_26985 -1.4 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26900 -1.4 -1.5 L-cystine transporter tcyP compare
PS417_20160 -1.4 -1.9 cysteine synthase compare
PS417_04390 -1.4 -2.1 toluene tolerance protein compare
PS417_09470 -1.3 -1.8 hypothetical protein compare
PS417_13800 -1.3 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_14065 -1.3 -6.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22375 -1.3 -1.2 cold-shock protein compare
PS417_21095 -1.3 -7.8 membrane protein compare
PS417_05100 -1.2 -2.6 RNA polymerase sigma factor compare
PS417_02225 -1.2 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17215 -1.2 -1.3 peptidylprolyl isomerase compare
PS417_18780 -1.2 -2.1 flavin reductase compare
PS417_19600 -1.2 -1.5 exonuclease compare
PS417_08365 -1.2 -1.4 hypothetical protein compare
PS417_13790 -1.2 -2.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_03560 -1.2 -1.4 GTP-binding protein compare
PS417_22450 -1.1 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_28080 -1.1 -7.7 phosphate ABC transporter permease compare
PS417_04585 -1.1 -1.6 hypothetical protein compare
PS417_23775 -1.1 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_06375 -1.1 -0.7 deoxycytidine triphosphate deaminase compare
PS417_13795 -1.1 -3.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_23910 -1.1 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23360 -1.1 -1.0 hypothetical protein compare
PS417_27070 -1.1 -5.7 alpha/beta hydrolase compare
PS417_08380 -1.1 -3.6 ABC transporter ATP-binding protein compare
PS417_13510 -1.0 -1.3 polyketide cyclase compare
PS417_08130 -1.0 -1.9 aspartate aminotransferase compare
PS417_04340 -1.0 -4.0 ribosome hibernation promoting factor HPF compare
PS417_02270 -1.0 -3.8 carbamoyltransferase compare
PS417_24585 -1.0 -6.2 AMP nucleosidase compare
PS417_02415 -1.0 -2.4 phosphoserine phosphatase compare
PS417_03380 -1.0 -1.3 hypothetical protein compare
PS417_13075 -1.0 -1.9 hypothetical protein compare
PS417_27295 -1.0 -4.7 hypothetical protein compare
PS417_27585 -1.0 -1.7 diaminopimelate epimerase compare
PS417_26760 -0.9 -4.1 oxidase compare
PS417_09695 -0.9 -1.8 hydrolase compare
PS417_09625 -0.9 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_24705 -0.9 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_06145 -0.9 -1.1 hypothetical protein compare
PS417_00535 -0.9 -2.5 Holliday junction resolvase compare
PS417_20985 -0.9 -0.6 porin compare
PS417_23950 -0.9 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_04595 -0.9 -1.9 cell division protein MraZ compare
PS417_24780 -0.9 -6.2 peptidase C13 compare
PS417_24535 -0.9 -1.6 membrane protein compare
PS417_08420 -0.9 -3.1 lipoprotein compare
PS417_27865 -0.9 -2.7 LysR family transcriptional regulator compare
PS417_00755 -0.9 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_27435 -0.9 -4.3 polyphosphate kinase compare
PS417_27605 -0.9 -3.5 hypothetical protein compare
PS417_17865 -0.9 -3.2 2-keto-3-deoxy-L-rhamnonate aldolase compare
PS417_27195 -0.9 -1.1 N-acetylglutamate synthase compare
PS417_22535 -0.9 -3.3 ornithine acetyltransferase compare
PS417_24895 -0.9 -1.2 hypothetical protein compare
PS417_27785 -0.9 -4.1 phosphoglucomutase compare
PS417_13820 -0.9 -2.9 UDP-glucose 6-dehydrogenase compare
PS417_14540 -0.8 -1.4 cytochrome C oxidase subunit III compare
PS417_02770 -0.8 -2.3 membrane protein compare
PS417_22445 -0.8 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_21400 -0.8 -2.4 TetR family transcriptional regulator compare
PS417_03625 -0.8 -4.0 lipid A 3-O-deacylase compare
PS417_21825 -0.8 -4.5 hydrolase compare
PS417_04365 -0.8 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04735 -0.8 -3.7 LysR family transcriptional regulator compare
PS417_27465 -0.8 -6.0 cystathionine gamma-synthase compare
PS417_11945 -0.8 -2.1 hypothetical protein compare
PS417_27835 -0.8 -3.5 endoribonuclease compare
PS417_05595 -0.8 -4.8 ornithine carbamoyltransferase compare
PS417_21760 -0.8 -1.2 hypothetical protein compare
PS417_08540 -0.8 -1.8 RNA helicase compare
PS417_11440 -0.8 -1.8 hypothetical protein compare
PS417_15075 -0.8 -5.2 NAD-glutamate dehydrogenase compare
PS417_03260 -0.8 -0.7 5S ribosomal RNA compare
PS417_04375 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_00475 -0.8 -2.9 membrane protein compare
PS417_06140 -0.8 -1.8 cold-shock protein compare
PS417_21480 -0.7 -0.9 23S rRNA pseudouridylate synthase compare
PS417_16720 -0.7 -1.0 membrane protein compare
PS417_07165 -0.7 -2.5 dihydrodipicolinate synthase compare
PS417_25155 -0.7 -1.4 hypothetical protein compare
PS417_28050 -0.7 -1.9 hypothetical protein compare
PS417_15520 -0.7 -2.7 hypothetical protein compare
PS417_27230 -0.7 -2.5 membrane protein implicated in regulation of membrane protease activity compare
PS417_09620 -0.7 -4.8 lipopolysaccharide biosynthesis protein compare
PS417_04310 -0.7 -2.4 hypothetical protein compare
PS417_28035 -0.7 -2.9 transcriptional regulator PhoB compare
PS417_18395 -0.7 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_08155 -0.7 -0.9 integration host factor subunit beta compare
PS417_00185 -0.7 -1.9 tryptophan synthase subunit beta compare
PS417_27910 -0.7 -2.0 PppA compare
PS417_27065 -0.7 -1.7 hypothetical protein compare
PS417_24710 -0.7 -3.1 lipoprotein compare
PS417_10025 -0.7 -1.1 bacteriophage lambda NinG family protein compare
PS417_20655 -0.7 -4.1 group 1 glycosyl transferase compare
PS417_27815 -0.7 -1.0 hypothetical protein compare
PS417_28405 -0.7 -1.3 hypothetical protein compare
PS417_22805 -0.7 -3.9 hypothetical protein compare
PS417_03300 -0.7 -2.0 alanine acetyltransferase compare
PS417_20645 -0.7 -4.1 membrane protein compare
PS417_24570 -0.7 -2.2 AsnC family transcriptional regulator compare
PS417_23370 -0.7 -2.7 protoheme IX farnesyltransferase compare
PS417_20855 -0.7 -0.8 hypothetical protein compare
PS417_02975 -0.7 -1.2 3-dehydroquinate dehydratase compare
PS417_04180 -0.7 -2.1 GntR family transcriptional regulator compare
PS417_26550 -0.7 -2.5 ABC transporter compare
PS417_13805 -0.7 -3.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_22565 -0.7 -0.5 formyltetrahydrofolate deformylase compare
PS417_24265 -0.6 -2.4 ABC transporter ATP-binding protein compare
PS417_04445 -0.6 -3.0 cupin compare
PS417_22350 -0.6 -1.4 Fis family transcriptional regulator compare
PS417_24620 -0.6 -1.1 hypothetical protein compare
PS417_28020 -0.6 -1.3 chorismate--pyruvate lyase compare
PS417_06355 -0.6 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_05200 -0.6 -2.3 DNA recombination protein RecO compare
PS417_27535 -0.6 -4.0 chemotaxis protein CheY compare
PS417_13685 -0.6 -4.4 HxlR family transcriptional regulator compare
PS417_27125 -0.6 -4.0 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_02160 -0.6 -0.9 hypothetical protein compare
PS417_03270 -0.6 -3.1 paraquat-inducible protein A compare
PS417_23385 -0.6 -4.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_06370 -0.6 -0.8 cold-shock protein compare
PS417_12595 -0.6 -0.9 transcriptional regulator compare
PS417_27255 -0.6 -3.6 glycine cleavage system protein T compare
PS417_20825 -0.6 -1.8 drug:proton antiporter compare
PS417_20650 -0.6 -4.3 hypothetical protein compare
PS417_19475 -0.6 -2.5 pseudouridine synthase compare
PS417_06895 -0.6 -1.4 DNA-binding protein compare
PS417_15285 -0.6 -0.8 type VI secretion protein compare
PS417_11215 -0.6 -2.2 arylesterase compare
PS417_14850 -0.6 -1.5 hypothetical protein compare
PS417_05840 -0.6 -1.9 LuxR family transcriptional regulator compare
PS417_12035 -0.6 -1.5 dihydroxyacetone kinase compare
PS417_23375 -0.6 -1.1 cytochrome C oxidase compare
PS417_01270 -0.6 -1.4 iron ABC transporter substrate-binding protein compare
PS417_12325 -0.6 -2.8 precorrin-4 C11-methyltransferase compare
PS417_21275 -0.6 -4.0 GntR family transcriptional regulator compare
PS417_06045 -0.6 -1.7 membrane protein compare
PS417_12845 -0.6 -2.2 NAD(P)H dehydrogenase compare
PS417_18370 -0.6 -1.5 hypothetical protein compare
PS417_08685 -0.6 -1.1 flagellar hook-length control protein FliK compare
PS417_14840 -0.6 -1.8 abortive phage infection protein compare
PS417_09930 -0.6 -1.0 hypothetical protein compare
PS417_10955 -0.6 -2.2 porin compare
PS417_05345 -0.6 -1.8 exotoxin compare
PS417_10305 -0.6 -1.7 hypothetical protein compare
PS417_01915 -0.6 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24935 -0.6 -0.5 hypothetical protein compare
PS417_25400 -0.6 -2.9 bacterioferritin compare
PS417_08170 -0.6 -3.3 capsular biosynthesis protein compare
PS417_06620 -0.6 -1.7 hypothetical protein compare
PS417_18915 -0.6 -1.8 hypothetical protein compare
PS417_19215 -0.6 -2.0 polyphosphate kinase compare
PS417_02280 -0.6 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_08415 -0.6 -3.5 hypothetical protein compare
PS417_20265 -0.6 -1.4 transcriptional regulator compare


Specific Phenotypes

For 14 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms