Experiment set23IT008 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_02255 -5.3 -3.6 lipopolysaccharide kinase compare
PS417_06775 -4.9 -7.5 antibiotic transporter compare
PS417_06770 -4.6 -8.7 multidrug transporter compare
PS417_23915 -4.4 -6.4 pantoate--beta-alanine ligase compare
PS417_24800 -3.5 -6.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06375 -3.4 -1.3 deoxycytidine triphosphate deaminase compare
PS417_19940 -3.3 -11.9 membrane protein conserved
PS417_11705 -2.8 -9.1 cyclic peptide transporter compare
PS417_20130 -2.8 -13.1 dehydrogenase compare
PS417_06530 -2.6 -2.9 membrane protein compare
PS417_08125 -2.4 -0.9 prephenate dehydratase compare
PS417_16915 -2.3 -5.8 hemolysin D compare
PS417_08835 -2.2 -7.1 ABC transporter conserved
PS417_07710 -2.2 -3.6 membrane protein compare
PS417_11700 -2.1 -12.5 ligand-gated channel compare
PS417_16910 -2.1 -7.4 multidrug resistance protein B compare
PS417_16920 -2.1 -5.6 multidrug RND transporter compare
PS417_02690 -2.0 -6.6 N-acylglucosamine 2-epimerase conserved
PS417_23775 -2.0 -2.4 exodeoxyribonuclease V subunit beta compare
PS417_28070 -2.0 -10.6 phosphate ABC transporter ATP-binding protein compare
PS417_01955 -2.0 -8.6 peptidase compare
PS417_04585 -1.9 -2.4 hypothetical protein compare
PS417_21100 -1.8 -9.4 alpha-L-glutamate ligase compare
PS417_04650 -1.8 -1.0 D-alanine--D-alanine ligase compare
PS417_27795 -1.8 -0.7 orotate phosphoribosyltransferase compare
PS417_20160 -1.8 -2.9 cysteine synthase compare
PS417_23575 -1.8 -2.5 hypothetical protein compare
PS417_24835 -1.7 -4.4 hypothetical protein compare
PS417_04390 -1.7 -2.6 toluene tolerance protein compare
PS417_27865 -1.7 -4.6 LysR family transcriptional regulator compare
PS417_09595 -1.7 -4.4 membrane protein compare
PS417_09615 -1.7 -6.7 glycosyl transferase family 1 compare
PS417_16490 -1.7 -1.8 cell division protein FtsK compare
PS417_02485 -1.7 -5.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09600 -1.7 -4.6 glycosyl transferase family 1 compare
PS417_24705 -1.6 -2.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_26730 -1.6 -0.9 pyrroline-5-carboxylate reductase compare
PS417_27245 -1.6 -3.8 aminotransferase DegT compare
PS417_04365 -1.6 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01495 -1.6 -9.3 amino acid ABC transporter conserved
PS417_27195 -1.6 -1.7 N-acetylglutamate synthase compare
PS417_27815 -1.5 -2.1 hypothetical protein compare
PS417_11440 -1.5 -2.6 hypothetical protein compare
PS417_21095 -1.5 -6.9 membrane protein compare
PS417_13510 -1.5 -1.7 polyketide cyclase compare
PS417_13800 -1.5 -3.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_09585 -1.5 -5.9 acetyltransferase compare
PS417_03465 -1.5 -2.0 type III secretion protein compare
PS417_27940 -1.5 -2.1 type VI secretion protein compare
PS417_24370 -1.5 -1.2 (2Fe-2S)-binding protein compare
PS417_26985 -1.5 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20610 -1.4 -1.6 hypothetical protein compare
PS417_04340 -1.4 -5.6 ribosome hibernation promoting factor HPF compare
PS417_00535 -1.4 -3.5 Holliday junction resolvase compare
PS417_08840 -1.4 -6.8 serine/threonine protein kinase conserved
PS417_21480 -1.3 -1.5 23S rRNA pseudouridylate synthase compare
PS417_04385 -1.3 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_07140 -1.3 -4.1 peptidase M48 compare
PS417_09590 -1.3 -3.3 membrane protein compare
PS417_20125 -1.3 -3.8 phosphoribosylglycinamide formyltransferase compare
PS417_23910 -1.3 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_01620 -1.3 -2.5 preprotein translocase subunit SecB compare
PS417_24585 -1.3 -8.0 AMP nucleosidase compare
PS417_22690 -1.3 -3.2 phosphogluconate dehydratase compare
PS417_09470 -1.3 -1.4 hypothetical protein compare
PS417_22450 -1.2 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_21655 -1.2 -1.4 aspartate kinase compare
PS417_22375 -1.2 -1.2 cold-shock protein compare
PS417_28080 -1.2 -6.5 phosphate ABC transporter permease compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_15215 -1.2 -1.9 protein activator of alkane oxidation PraA compare
PS417_05140 -1.2 -2.2 dipicolinate synthase compare
PS417_02270 -1.2 -4.6 carbamoyltransferase compare
PS417_13820 -1.1 -4.7 UDP-glucose 6-dehydrogenase compare
PS417_27605 -1.1 -5.6 hypothetical protein compare
PS417_13870 -1.1 -3.9 hypothetical protein compare
PS417_08380 -1.1 -3.8 ABC transporter ATP-binding protein compare
PS417_14065 -1.1 -5.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_17840 -1.1 -3.0 betaine-aldehyde dehydrogenase compare
PS417_05595 -1.1 -5.6 ornithine carbamoyltransferase compare
PS417_03300 -1.1 -3.1 alanine acetyltransferase compare
PS417_21015 -1.1 -2.5 EstX protein compare
PS417_04375 -1.0 -1.2 ABC transporter ATP-binding protein compare
PS417_13455 -1.0 -3.4 alkaline proteinase inhibitor compare
PS417_09620 -1.0 -6.6 lipopolysaccharide biosynthesis protein compare
PS417_07165 -1.0 -4.9 dihydrodipicolinate synthase compare
PS417_21400 -1.0 -4.3 TetR family transcriptional regulator compare
PS417_15075 -1.0 -6.1 NAD-glutamate dehydrogenase compare
PS417_27785 -1.0 -5.2 phosphoglucomutase compare
PS417_13795 -1.0 -4.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_27070 -1.0 -4.9 alpha/beta hydrolase compare
PS417_00175 -1.0 -1.2 CigR compare
PS417_02225 -1.0 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_12110 -1.0 -1.3 ATP-binding protein compare
PS417_02415 -1.0 -1.9 phosphoserine phosphatase compare
PS417_23150 -1.0 -3.4 Cro/Cl family transcriptional regulator compare
PS417_23105 -1.0 -1.3 hypothetical protein compare
PS417_12400 -1.0 -2.9 oxidoreductase compare
PS417_13895 -0.9 -3.1 chemotaxis protein CheB compare
PS417_03380 -0.9 -1.3 hypothetical protein compare
PS417_27870 -0.9 -1.8 ATP-dependent DNA helicase RecG compare
PS417_24710 -0.9 -5.0 lipoprotein compare
PS417_17560 -0.9 -2.7 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_00475 -0.9 -2.7 membrane protein compare
PS417_13805 -0.9 -4.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_20645 -0.9 -5.9 membrane protein compare
PS417_14590 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_27295 -0.9 -3.8 hypothetical protein compare
PS417_09625 -0.9 -3.2 sugar ABC transporter substrate-binding protein compare
PS417_13790 -0.9 -2.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_10985 -0.9 -1.0 NADH:flavin oxidoreductase compare
PS417_24780 -0.9 -5.7 peptidase C13 compare
PS417_16475 -0.9 -2.8 camphor resistance protein CrcB compare
PS417_22745 -0.8 -3.9 hypothetical protein compare
PS417_15520 -0.8 -3.2 hypothetical protein compare
PS417_05790 -0.8 -3.1 hypothetical protein compare
PS417_07455 -0.8 -1.4 glutamine amidotransferase compare
PS417_18355 -0.8 -5.4 DNA-binding protein compare
PS417_20635 -0.8 -1.1 ABC transporter ATP-binding protein compare
PS417_24115 -0.8 -1.5 hypothetical protein compare
PS417_06600 -0.8 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_06245 -0.8 -1.5 zinc metallopeptidase RseP compare
PS417_04595 -0.8 -1.8 cell division protein MraZ compare
PS417_08540 -0.8 -1.9 RNA helicase compare
PS417_23385 -0.8 -4.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_15525 -0.8 -3.4 AraC family transcriptional regulator compare
PS417_26695 -0.8 -0.9 uracil phosphoribosyltransferase compare
PS417_02365 -0.8 -1.8 hypothetical protein compare
PS417_27155 -0.8 -1.5 aliphatic sulfonates transport ATP-binding subunit compare
PS417_24745 -0.8 -1.6 gamma-glutamyl phosphate reductase compare
PS417_20855 -0.8 -1.0 hypothetical protein compare
PS417_18020 -0.8 -1.9 hypothetical protein compare
PS417_07855 -0.8 -1.6 hypothetical protein compare
PS417_03625 -0.8 -4.3 lipid A 3-O-deacylase compare
PS417_22535 -0.8 -3.1 ornithine acetyltransferase compare
PS417_28020 -0.8 -1.6 chorismate--pyruvate lyase compare
PS417_27290 -0.8 -0.8 hypothetical protein compare
PS417_05710 -0.8 -2.6 hypothetical protein compare
PS417_22825 -0.8 -3.6 hypothetical protein compare
PS417_16520 -0.7 -1.9 cold-shock protein compare
PS417_07560 -0.7 -1.2 universal stress protein UspA compare
PS417_18755 -0.7 -1.6 CrtK compare
PS417_01915 -0.7 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00180 -0.7 -1.4 tryptophan synthase subunit alpha compare
PS417_12840 -0.7 -1.7 TetR family transcriptional regulator compare
PS417_02160 -0.7 -1.0 hypothetical protein compare
PS417_08685 -0.7 -1.3 flagellar hook-length control protein FliK compare
PS417_00710 -0.7 -4.8 fusaric acid resistance protein compare
PS417_21275 -0.7 -4.6 GntR family transcriptional regulator compare
PS417_03265 -0.7 -3.2 paraquat-inducible protein A compare
PS417_06455 -0.7 -2.1 Fe(II)-dependent oxygenase compare
PS417_17675 -0.7 -1.3 ABC transporter compare
PS417_27065 -0.7 -3.8 hypothetical protein compare
PS417_12595 -0.7 -1.4 transcriptional regulator compare
PS417_17545 -0.7 -2.2 2-oxoisovalerate dehydrogenase compare
PS417_27585 -0.7 -1.1 diaminopimelate epimerase compare
PS417_21825 -0.7 -4.9 hydrolase compare
PS417_17550 -0.7 -2.1 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_27715 -0.7 -2.3 Fe-S oxidoreductase compare
PS417_00660 -0.7 -1.9 DSBA oxidoreductase compare
PS417_07655 -0.7 -1.7 glycerophosphodiester phosphodiesterase compare
PS417_20665 -0.7 -2.7 hypothetical protein compare
PS417_26760 -0.7 -2.3 oxidase compare
PS417_06445 -0.7 -1.8 iron-siderophore ABC transporter permease compare
PS417_23770 -0.7 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_01590 -0.7 -1.3 polysaccharide deacetylase compare
PS417_27465 -0.7 -4.3 cystathionine gamma-synthase compare
PS417_01180 -0.7 -3.7 ribosomal protein S6 modification protein compare
PS417_17120 -0.7 -2.2 protein kinase compare
PS417_15710 -0.7 -1.8 nitrate reductase compare
PS417_08415 -0.6 -4.2 hypothetical protein compare
PS417_17960 -0.6 -2.5 LysR family transcriptional regulator compare
PS417_27515 -0.6 -2.0 heme biosynthesis protein HemY compare
PS417_08410 -0.6 -1.6 hypothetical protein compare
PS417_08365 -0.6 -0.9 hypothetical protein compare
PS417_20025 -0.6 -1.3 alpha-ribazole phosphatase compare
PS417_05830 -0.6 -1.7 hypothetical protein compare
PS417_00075 -0.6 -1.6 hypothetical protein compare
PS417_05505 -0.6 -3.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22350 -0.6 -1.2 Fis family transcriptional regulator compare
PS417_01605 -0.6 -0.6 phosphoglycerate mutase compare
PS417_06845 -0.6 -1.0 lipoprotein compare
PS417_09335 -0.6 -1.2 HAD family hydrolase compare
PS417_22935 -0.6 -2.0 hypothetical protein compare
PS417_15780 -0.6 -2.1 membrane protein compare
PS417_20825 -0.6 -1.4 drug:proton antiporter compare
PS417_11400 -0.6 -1.4 phosphoglycerate mutase compare
PS417_05520 -0.6 -3.1 histidine kinase compare
PS417_12520 -0.6 -1.1 hypothetical protein compare
PS417_08435 -0.6 -1.2 pilus assembly protein PilZ compare
PS417_01780 -0.6 -1.7 proline iminopeptidase compare
PS417_13375 -0.6 -3.2 LysR family transcriptional regulator compare
PS417_07000 -0.6 -2.1 hypothetical protein compare
PS417_12755 -0.6 -1.6 RND transporter compare
PS417_13305 -0.6 -0.9 hypothetical protein compare
PS417_01640 -0.6 -3.2 histidine kinase compare
PS417_12280 -0.6 -1.2 MerR family transcriptional regulator compare
PS417_10425 -0.6 -1.0 hypothetical protein compare
PS417_12990 -0.6 -1.8 nucleoside hydrolase compare
PS417_00405 -0.6 -3.7 DNA polymerase I compare


Specific Phenotypes

For 13 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms