Experiment set23IT007 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PS417_06770 -4.1 -10.8 multidrug transporter compare
PS417_06775 -3.8 -6.1 antibiotic transporter compare
PS417_19940 -2.8 -12.2 membrane protein conserved
PS417_23915 -2.7 -5.7 pantoate--beta-alanine ligase compare
PS417_20855 -2.7 -2.0 hypothetical protein compare
PS417_16915 -2.6 -6.9 hemolysin D compare
PS417_04380 -2.6 -1.6 ABC transporter permease compare
PS417_20130 -2.6 -15.5 dehydrogenase compare
PS417_02690 -2.4 -8.8 N-acylglucosamine 2-epimerase conserved
PS417_16920 -2.3 -4.0 multidrug RND transporter compare
PS417_01915 -2.3 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_09590 -2.3 -7.1 membrane protein compare
PS417_02255 -2.3 -2.6 lipopolysaccharide kinase compare
PS417_06530 -2.2 -3.5 membrane protein compare
PS417_23575 -2.2 -5.7 hypothetical protein compare
PS417_22450 -2.1 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_28070 -2.0 -10.4 phosphate ABC transporter ATP-binding protein compare
PS417_27795 -2.0 -0.7 orotate phosphoribosyltransferase compare
PS417_04585 -1.9 -2.2 hypothetical protein compare
PS417_16910 -1.9 -8.0 multidrug resistance protein B compare
PS417_07710 -1.9 -3.7 membrane protein compare
PS417_11700 -1.9 -8.1 ligand-gated channel compare
PS417_24705 -1.8 -4.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_11705 -1.8 -6.1 cyclic peptide transporter compare
PS417_24835 -1.8 -4.6 hypothetical protein compare
PS417_08835 -1.7 -7.6 ABC transporter conserved
PS417_01495 -1.7 -9.1 amino acid ABC transporter conserved
PS417_01955 -1.7 -10.0 peptidase compare
PS417_26730 -1.7 -0.9 pyrroline-5-carboxylate reductase compare
PS417_20635 -1.7 -1.8 ABC transporter ATP-binding protein compare
PS417_27135 -1.7 -1.1 glutamine synthetase compare
PS417_04365 -1.6 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08840 -1.6 -6.9 serine/threonine protein kinase conserved
PS417_04385 -1.6 -2.9 organic solvent ABC transporter substrate-binding protein compare
PS417_20160 -1.5 -2.7 cysteine synthase compare
PS417_21095 -1.5 -6.8 membrane protein compare
PS417_14065 -1.5 -5.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_09595 -1.5 -5.8 membrane protein compare
PS417_04390 -1.5 -2.1 toluene tolerance protein compare
PS417_13075 -1.4 -2.5 hypothetical protein compare
PS417_24800 -1.4 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_15520 -1.4 -4.4 hypothetical protein compare
PS417_07140 -1.4 -4.2 peptidase M48 compare
PS417_21100 -1.4 -7.1 alpha-L-glutamate ligase compare
PS417_13800 -1.3 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_09600 -1.3 -4.5 glycosyl transferase family 1 compare
PS417_27605 -1.3 -6.4 hypothetical protein compare
PS417_06895 -1.3 -3.4 DNA-binding protein compare
PS417_17215 -1.2 -2.7 peptidylprolyl isomerase compare
PS417_27245 -1.2 -3.0 aminotransferase DegT compare
PS417_26985 -1.2 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_28080 -1.2 -7.4 phosphate ABC transporter permease compare
PS417_11400 -1.2 -1.4 phosphoglycerate mutase compare
PS417_23910 -1.2 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_02270 -1.2 -3.6 carbamoyltransferase compare
PS417_09245 -1.2 -1.9 recombinase RdgC compare
PS417_23770 -1.2 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_05325 -1.2 -2.9 fimbrial protein compare
PS417_04340 -1.2 -4.4 ribosome hibernation promoting factor HPF compare
PS417_13790 -1.1 -4.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_17305 -1.1 -1.8 hypothetical protein compare
PS417_09470 -1.1 -1.3 hypothetical protein compare
PS417_06370 -1.1 -1.4 cold-shock protein compare
PS417_27865 -1.1 -3.7 LysR family transcriptional regulator compare
PS417_26850 -1.1 -0.9 twin-arginine translocation pathway signal protein compare
PS417_13820 -1.1 -4.6 UDP-glucose 6-dehydrogenase compare
PS417_02280 -1.1 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_08380 -1.1 -3.8 ABC transporter ATP-binding protein compare
PS417_27070 -1.1 -5.1 alpha/beta hydrolase compare
PS417_03560 -1.1 -1.3 GTP-binding protein compare
PS417_09615 -1.0 -2.3 glycosyl transferase family 1 compare
PS417_20125 -1.0 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_01620 -1.0 -2.3 preprotein translocase subunit SecB compare
PS417_13795 -1.0 -4.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_02485 -1.0 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06245 -1.0 -1.8 zinc metallopeptidase RseP compare
PS417_21400 -1.0 -3.6 TetR family transcriptional regulator compare
PS417_21480 -1.0 -1.2 23S rRNA pseudouridylate synthase compare
PS417_20985 -1.0 -0.7 porin compare
PS417_17960 -1.0 -2.6 LysR family transcriptional regulator compare
PS417_12280 -1.0 -1.5 MerR family transcriptional regulator compare
PS417_24585 -0.9 -6.6 AMP nucleosidase compare
PS417_01095 -0.9 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_24615 -0.9 -0.7 hypothetical protein compare
PS417_20610 -0.9 -0.9 hypothetical protein compare
PS417_21825 -0.9 -5.8 hydrolase compare
PS417_09625 -0.9 -2.3 sugar ABC transporter substrate-binding protein compare
PS417_09585 -0.9 -4.2 acetyltransferase compare
PS417_00475 -0.9 -3.7 membrane protein compare
PS417_15935 -0.9 -1.4 Rrf2 family transcriptional regulator compare
PS417_15075 -0.9 -5.3 NAD-glutamate dehydrogenase compare
PS417_06375 -0.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_05595 -0.9 -4.9 ornithine carbamoyltransferase compare
PS417_13730 -0.9 -1.5 hypothetical protein compare
PS417_27585 -0.9 -1.1 diaminopimelate epimerase compare
PS417_08420 -0.9 -3.2 lipoprotein compare
PS417_25975 -0.8 -5.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_13510 -0.8 -1.1 polyketide cyclase compare
PS417_26760 -0.8 -2.7 oxidase compare
PS417_15710 -0.8 -1.5 nitrate reductase compare
PS417_04595 -0.8 -1.9 cell division protein MraZ compare
PS417_15525 -0.8 -4.0 AraC family transcriptional regulator compare
PS417_26240 -0.8 -1.8 N-methylproline demethylase compare
PS417_01285 -0.8 -1.9 haloacid dehalogenase compare
PS417_06355 -0.8 -2.7 protein-L-isoaspartate O-methyltransferase compare
PS417_04310 -0.8 -2.4 hypothetical protein compare
PS417_09300 -0.8 -2.8 peptidylprolyl isomerase compare
PS417_00975 -0.8 -1.3 hypothetical protein compare
PS417_20645 -0.8 -5.2 membrane protein compare
PS417_13870 -0.8 -2.4 hypothetical protein compare
PS417_27065 -0.8 -2.8 hypothetical protein compare
PS417_05140 -0.8 -1.7 dipicolinate synthase compare
PS417_03625 -0.8 -4.8 lipid A 3-O-deacylase compare
PS417_08540 -0.8 -1.9 RNA helicase compare
PS417_00550 -0.8 -0.9 hypothetical protein compare
PS417_05505 -0.8 -4.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_21090 -0.8 -1.8 hypothetical protein compare
PS417_00535 -0.8 -1.6 Holliday junction resolvase compare
PS417_11930 -0.8 -4.1 hypothetical protein compare
PS417_10920 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_24370 -0.8 -0.8 (2Fe-2S)-binding protein compare
PS417_24780 -0.8 -6.0 peptidase C13 compare
PS417_20660 -0.8 -4.4 hypothetical protein compare
PS417_18755 -0.8 -1.9 CrtK compare
PS417_18070 -0.8 -0.9 general secretion pathway protein GspH compare
PS417_28050 -0.8 -1.7 hypothetical protein compare
PS417_20670 -0.7 -3.8 glycosyl transferase family 2 compare
PS417_08155 -0.7 -1.0 integration host factor subunit beta compare
PS417_13805 -0.7 -3.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_09680 -0.7 -1.5 hydrolase compare
PS417_22690 -0.7 -1.3 phosphogluconate dehydratase compare
PS417_23315 -0.7 -1.2 transcriptional regulator compare
PS417_21275 -0.7 -4.9 GntR family transcriptional regulator compare
PS417_05510 -0.7 -2.5 alpha/beta hydrolase compare
PS417_08320 -0.7 -1.8 metal-chelation protein CHAD compare
PS417_00715 -0.7 -3.5 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) compare
PS417_15035 -0.7 -1.2 alkylhydroperoxidase compare
PS417_02575 -0.7 -2.1 membrane protein compare
PS417_07560 -0.7 -1.1 universal stress protein UspA compare
PS417_12755 -0.7 -2.2 RND transporter compare
PS417_23135 -0.7 -1.4 GTP-binding protein compare
PS417_04590 -0.7 -3.4 methyltransferase compare
PS417_26175 -0.7 -0.9 sarcosine oxidase subunit gamma compare
PS417_23080 -0.7 -2.4 sugar ABC transporter ATPase compare
PS417_02630 -0.7 -2.1 NAD synthetase compare
PS417_15030 -0.7 -1.0 short-chain dehydrogenase compare
PS417_21695 -0.7 -1.4 succinylglutamate-semialdehyde dehydrogenase compare
PS417_21845 -0.7 -1.9 membrane protein compare
PS417_17630 -0.7 -1.4 RNA polymerase sigma factor compare
PS417_28400 -0.7 -3.4 serine/threonine protein phosphatase compare
PS417_24115 -0.7 -1.7 hypothetical protein compare
PS417_05815 -0.7 -2.7 recombinase RecA compare
PS417_28075 -0.7 -1.9 phosphate ABC transporter permease compare
PS417_06465 -0.7 -1.9 transcriptional regulator compare
PS417_00220 -0.7 -1.3 hypothetical protein compare
PS417_17155 -0.7 -2.1 cytochrome B561 compare
PS417_08415 -0.6 -4.0 hypothetical protein compare
PS417_18360 -0.6 -1.8 hypothetical protein compare
PS417_27295 -0.6 -2.1 hypothetical protein compare
PS417_18355 -0.6 -4.6 DNA-binding protein compare
PS417_26335 -0.6 -1.1 BetI family transcriptional regulator compare
PS417_03525 -0.6 -1.1 hypothetical protein compare
PS417_19285 -0.6 -1.0 ankyrin compare
PS417_22570 -0.6 -0.4 H-NS histone compare
PS417_05650 -0.6 -2.7 leucyl-tRNA synthetase compare
PS417_02820 -0.6 -1.7 urea ABC transporter ATP-binding protein compare
PS417_06680 -0.6 -2.9 nuclease PIN compare
PS417_22825 -0.6 -2.8 hypothetical protein compare
PS417_03300 -0.6 -2.0 alanine acetyltransferase compare
PS417_03275 -0.6 -4.3 mammalian cell entry protein compare
PS417_27785 -0.6 -3.4 phosphoglucomutase compare
PS417_05515 -0.6 -4.4 hypothetical protein compare
PS417_13620 -0.6 -1.0 thermostable hemolysin compare
PS417_03265 -0.6 -2.5 paraquat-inducible protein A compare
PS417_27005 -0.6 -0.7 membrane protein compare
PS417_02720 -0.6 -0.6 TetR family transcriptional regulator compare
PS417_13055 -0.6 -1.7 aminotransferase compare
PS417_27465 -0.6 -5.1 cystathionine gamma-synthase compare
PS417_08045 -0.6 -1.2 uracil permease compare
PS417_09620 -0.6 -3.8 lipopolysaccharide biosynthesis protein compare
PS417_27535 -0.6 -3.7 chemotaxis protein CheY compare
PS417_00720 -0.6 -3.0 membrane protein compare
PS417_22745 -0.6 -2.5 hypothetical protein compare
PS417_19505 -0.6 -1.4 2,4-diaminobutyrate 4-aminotransferase compare
PS417_09325 -0.6 -2.4 peptidase S41 compare
PS417_22275 -0.6 -2.9 phosphoesterase compare
PS417_05525 -0.6 -2.3 Fis family transcriptional regulator compare
PS417_14855 -0.6 -2.1 gluconolactonase compare
PS417_15180 -0.6 -2.6 acyl dehydratase compare
PS417_01180 -0.6 -2.8 ribosomal protein S6 modification protein compare
PS417_01195 -0.6 -1.0 RNA-binding protein S4 compare
PS417_18395 -0.6 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_22840 -0.6 -1.2 tRNA-Met compare
PS417_22535 -0.6 -2.1 ornithine acetyltransferase compare
PS417_27460 -0.6 -2.2 hypothetical protein compare
PS417_14185 -0.6 -2.0 transcriptional regulator compare
PS417_06145 -0.6 -0.8 hypothetical protein compare
PS417_16535 -0.6 -2.1 NUDIX hydrolase compare
PS417_27705 -0.6 -0.9 amino acid dehydrogenase compare
PS417_25700 -0.6 -1.7 cyclic AMP receptor protein compare


Specific Phenotypes

For 14 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms