Experiment set23IT007 for Pseudomonas simiae WCS417

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PS417_06780 +3.4 13.0 TetR family transcriptional regulator compare
PS417_21430 +2.7 8.9 3-oxoacyl-ACP synthase compare
PS417_21830 +2.6 11.4 TetR family transcriptional regulator compare
PS417_12805 +2.5 20.3 glycogen branching protein compare
PS417_21270 +2.4 9.5 translation initiation factor 2 compare
PS417_23205 +2.1 14.3 transcriptional regulator compare
PS417_07615 +1.9 10.9 TetR family transcriptional regulator compare
PS417_22815 +1.7 12.6 permease compare
PS417_01855 +1.6 5.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_00385 +1.5 2.7 Fur family transcriptional regulator compare
PS417_20080 +1.5 6.6 peptidase P60 compare
PS417_25650 +1.4 6.3 anhydro-N-acetylmuramic acid kinase compare
PS417_19825 +1.4 12.3 ATPase AAA compare
PS417_22050 +1.4 6.4 ribonuclease BN compare
PS417_07620 +1.4 2.0 beta-hexosaminidase compare
PS417_22610 +1.4 6.5 pilus assembly protein PilZ compare
PS417_25790 +1.4 5.1 aminoglycoside phosphotransferase compare
PS417_21420 +1.4 11.8 aminodeoxychorismate lyase compare
PS417_25320 +1.3 6.8 dTDP-4-dehydrorhamnose reductase compare
PS417_27075 +1.3 4.1 thiol-disulfide isomerase compare
PS417_16370 +1.2 8.7 chemotaxis protein CheY compare
PS417_19880 +1.2 8.5 flagellar basal body L-ring protein compare
PS417_19735 +1.2 7.2 flagellar biosynthesis protein FliQ compare
PS417_12585 +1.2 7.1 acriflavine resistance protein B compare
PS417_21425 +1.2 3.7 4-amino-4-deoxychorismate lyase compare
PS417_21555 +1.2 9.8 flagellar hook protein FlgE compare
PS417_25645 +1.2 6.0 peptidase M23 compare
PS417_19785 +1.1 4.1 flagellar biogenesis protein compare
PS417_25710 +1.1 1.3 indole-3-glycerol-phosphate synthase compare
PS417_21565 +1.1 5.1 flagellar basal body rod protein FlgC compare
PS417_19740 +1.1 9.6 flagellar biosynthesis protein flip compare
PS417_11830 +1.1 2.9 membrane protein compare
PS417_19745 +1.1 8.8 flagellar assembly protein FliO compare
PS417_06365 +1.1 6.9 RNA polymerase sigma factor compare
PS417_19725 +1.1 6.4 flagellar biosynthesis protein FlhB compare
PS417_21560 +1.0 5.0 flagellar basal body rod modification protein FlgD compare
PS417_00355 +1.0 3.3 metal ABC transporter permease compare
PS417_21065 +1.0 2.7 3-methylitaconate isomerase compare
PS417_10720 +1.0 4.6 chemotaxis protein CheY compare
PS417_19695 +1.0 7.9 flagellar biosynthesis sigma factor compare
PS417_23210 +1.0 2.8 serine acetyltransferase compare
PS417_16510 +1.0 4.2 Clp protease ClpX compare
PS417_19800 +1.0 2.9 flagellar motor switch protein FliG compare
PS417_19710 +1.0 7.1 flagellar biosynthesis protein FlhA compare
PS417_24840 +1.0 2.7 hypothetical protein compare
PS417_21570 +1.0 5.1 flagellar basal body rod protein FlgB compare
PS417_16965 +1.0 5.5 hypothetical protein compare
PS417_15380 +1.0 4.5 hypothetical protein compare
PS417_20775 +0.9 5.0 coproporphyrinogen III oxidase compare
PS417_19865 +0.9 7.3 flagellar hook protein FlgK compare
PS417_21585 +0.9 6.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_04080 +0.9 2.8 peptide ABC transporter substrate-binding protein compare
PS417_11670 +0.9 2.9 multidrug transporter MATE compare
PS417_19605 +0.9 1.2 hypothetical protein compare
PS417_16160 +0.9 2.9 ABC transporter substrate-binding protein compare
PS417_00195 +0.9 2.6 hypothetical protein compare
PS417_19790 +0.9 2.8 ATP synthase compare
PS417_19765 +0.9 6.8 flagellar hook-length control protein compare
PS417_07840 +0.9 3.1 hypothetical protein compare
PS417_19795 +0.9 7.9 flagellar assembly protein FliH compare
PS417_20785 +0.9 3.6 transcriptional regulator compare
PS417_19805 +0.9 3.9 flagellar M-ring protein FliF compare
PS417_21125 +0.8 4.3 phosphoadenosine phosphosulfate reductase compare
PS417_21020 +0.8 6.3 phosphoenolpyruvate synthase compare
PS417_09930 +0.8 1.5 hypothetical protein compare
PS417_06970 +0.8 2.3 LysR family transcriptional regulator compare
PS417_17105 +0.8 2.3 spore coat protein compare
PS417_26645 +0.8 2.3 chemotaxis protein compare
PS417_02440 +0.8 3.1 flagellar motor protein MotB compare
PS417_09420 +0.8 1.1 LysR family transcriptional regulator compare
PS417_16555 +0.8 1.7 cupin compare
PS417_20705 +0.8 3.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_02705 +0.8 2.8 urease accessory protein UreF compare
PS417_23950 +0.8 1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_03080 +0.8 2.1 hypothetical protein compare
PS417_01965 +0.8 1.5 fimbriae biosynthesis protein compare
PS417_26750 +0.8 5.8 homoserine acetyltransferase compare
PS417_19730 +0.8 3.4 flagellar biosynthesis protein FliR compare
PS417_25815 +0.8 2.8 magnesium transporter ApaG compare
PS417_01575 +0.8 3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08190 +0.7 6.1 membrane protein compare
PS417_05165 +0.7 2.4 cytosol aminopeptidase compare
PS417_04500 +0.7 1.8 hypothetical protein compare
PS417_26655 +0.7 3.7 chemotaxis protein compare
PS417_19860 +0.7 6.3 flagellar hook protein FlgL compare
PS417_23545 +0.7 1.6 gamma-glutamyl kinase compare
PS417_01560 +0.7 2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_01585 +0.7 3.2 amino acid ABC transporter substrate-binding protein compare
PS417_21210 +0.7 2.0 amidotransferase compare
PS417_00735 +0.7 4.2 hypothetical protein compare
PS417_19755 +0.7 1.6 flagellar motor switch protein FliM compare
PS417_04485 +0.7 2.7 hypothetical protein compare
PS417_17755 +0.7 1.2 hypothetical protein compare
PS417_13965 +0.7 2.7 acetoin utilization protein compare
PS417_22950 +0.7 2.6 preQ0 transporter compare
PS417_10400 +0.7 2.4 membrane protein compare
PS417_00865 +0.7 2.5 hypothetical protein compare
PS417_13205 +0.7 2.1 isochorismate-pyruvate lyase compare
PS417_19885 +0.7 2.2 flagellar basal body rod protein FlgG compare
PS417_09640 +0.7 3.9 capsular biosynthesis protein compare
PS417_09335 +0.7 1.8 HAD family hydrolase compare
PS417_28220 +0.7 1.6 LysR family transcriptional regulator compare
PS417_00845 +0.7 1.6 transcriptional regulator compare
PS417_00160 +0.7 3.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_15105 +0.7 3.6 membrane protein compare
PS417_01580 +0.7 1.7 imidazole glycerol phosphate synthase compare
PS417_14805 +0.7 2.0 AraC family transcriptional regulator compare
PS417_21705 +0.7 2.9 arginine N-succinyltransferase compare
PS417_25305 +0.7 4.0 peptide ABC transporter permease compare
PS417_20715 +0.7 1.5 cytochrome Cbb3 compare
PS417_24935 +0.7 0.9 hypothetical protein compare
PS417_01950 +0.7 4.5 malate dehydrogenase compare
PS417_27660 +0.7 3.8 multidrug transporter compare
PS417_21510 +0.7 1.0 histidine kinase compare
PS417_00625 +0.6 3.0 taurine dioxygenase compare
PS417_15470 +0.6 3.4 saccharopine dehydrogenase compare
PS417_10645 +0.6 5.7 magnesium ABC transporter ATPase compare
PS417_10265 +0.6 1.9 peptidase compare
PS417_01565 +0.6 3.6 imidazole glycerol phosphate synthase compare
PS417_00650 +0.6 0.9 LysR family transcriptional regulator compare
PS417_09210 +0.6 1.3 TetR family transcriptional regulator compare
PS417_07470 +0.6 1.3 hypothetical protein compare
PS417_00370 +0.6 0.9 hypothetical protein compare
PS417_11410 +0.6 1.3 phospholipase compare
PS417_19665 +0.6 3.1 flagellar motor protein MotD compare
PS417_08465 +0.6 2.6 elongation factor GreAB compare
PS417_14395 +0.6 2.6 fe2+ zn2+ uptake regulation protein compare
PS417_05365 +0.6 1.7 FAD-binding protein compare
PS417_05105 +0.6 2.5 membrane protein compare
PS417_19820 +0.6 4.1 histidine kinase compare
PS417_17275 +0.6 2.7 hypothetical protein compare
PS417_01310 +0.6 1.6 ATPase compare
PS417_13395 +0.6 4.1 phosphoglucomutase compare
PS417_03675 +0.6 2.8 hypothetical protein compare
PS417_12215 +0.6 4.1 lytic transglycosylase compare
PS417_18150 +0.6 2.2 chemotaxis protein CheY compare
PS417_10125 +0.6 1.6 hypothetical protein compare
PS417_00925 +0.6 1.6 hypothetical protein compare
PS417_08730 +0.6 0.8 cytochrome C compare
PS417_02555 +0.6 4.6 exoribonuclease R compare
PS417_23160 +0.6 2.0 50S rRNA methyltransferase compare
PS417_18800 +0.6 1.9 hypothetical protein compare
PS417_16515 +0.6 1.6 Clp protease ClpS compare
PS417_06150 +0.6 2.5 SAM-dependent methlyltransferase compare
PS417_15495 +0.6 2.4 FAD-dependent oxidoreductase compare
PS417_03260 +0.6 1.1 5S ribosomal RNA compare
PS417_06135 +0.6 4.6 glycerol-3-phosphate acyltransferase compare
PS417_22065 +0.6 3.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
PS417_26525 +0.6 2.6 DEAD/DEAH box helicase compare
PS417_08185 +0.6 2.2 glycosyl transferase compare
PS417_15650 +0.6 1.0 glutamine amidotransferase compare
PS417_14255 +0.6 1.2 phosphate import ATP-binding protein PstB compare
PS417_00755 +0.6 0.5 biofilm PGA synthesis protein PgaD compare
PS417_02885 +0.6 2.1 hypothetical protein compare
PS417_26530 +0.6 1.1 hypothetical protein compare
PS417_23615 +0.6 1.1 sulfate transporter compare
PS417_16970 +0.6 3.5 membrane protein compare
PS417_17170 +0.6 4.4 carbon-nitrogen hydrolase compare
PS417_13255 +0.6 1.9 ABC transporter compare
PS417_26585 +0.6 1.9 malonate carrier protein compare
PS417_15095 +0.6 1.6 hypothetical protein compare
PS417_11060 +0.6 2.1 transporter compare
PS417_21475 +0.6 2.2 HAD family hydrolase compare
PS417_01280 +0.5 1.9 peptidoglycan-binding protein LysM compare
PS417_28105 +0.5 3.4 hypothetical protein compare
PS417_03095 +0.5 3.0 ATPase compare
PS417_13425 +0.5 1.8 cupin compare
PS417_12900 +0.5 2.1 Fe-S protein compare
PS417_15100 +0.5 1.7 BatB protein compare
PS417_18810 +0.5 1.8 hypothetical protein compare
PS417_11965 +0.5 1.6 GCN5 family acetyltransferase compare
PS417_08225 +0.5 2.8 acetolactate synthase compare
PS417_18000 +0.5 2.9 hypothetical protein compare
PS417_18490 +0.5 1.4 hypothetical protein compare
PS417_22250 +0.5 1.3 pseudouridine synthase compare
PS417_02895 +0.5 1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_01115 +0.5 1.1 serine acetyltransferase compare
PS417_19840 +0.5 4.2 flagellar cap protein FliD compare
PS417_09160 +0.5 1.4 GNAT family acetyltransferase compare
PS417_06480 +0.5 3.5 hypothetical protein compare
PS417_07315 +0.5 2.8 LysR family transcriptional regulator compare
PS417_24775 +0.5 2.3 dehydratase compare
PS417_08250 +0.5 1.3 competence protein ComEA compare
PS417_21595 +0.5 1.4 flagellar biosynthesis protein FlgN compare
PS417_27040 +0.5 1.5 3-phosphoglycerate dehydrogenase compare
PS417_05500 +0.5 0.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_07870 +0.5 1.6 hypothetical protein compare
PS417_08125 +0.5 0.4 prephenate dehydratase compare
PS417_21990 +0.5 1.3 LacI family transcriptional regulator compare
PS417_05010 +0.5 1.1 IclR family transcriptional regulator compare
PS417_27000 +0.5 1.7 membrane protein compare
PS417_20780 +0.5 2.4 hypothetical protein compare
PS417_18570 +0.5 2.1 peptidoglycan-binding protein compare
PS417_01750 +0.5 1.6 histidine ammonia-lyase compare
PS417_12795 +0.5 3.5 alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PS417_27875 +0.5 4.1 histidine kinase compare
PS417_26650 +0.5 3.4 histidine kinase compare
PS417_13010 +0.5 1.6 alpha/beta hydrolase compare
PS417_02800 +0.5 1.2 acetyltransferase compare
PS417_11225 +0.5 1.9 glyoxalase compare


Specific Phenotypes

For 14 genes in this experiment

For stress Fusaric acid in Pseudomonas simiae WCS417

For stress Fusaric acid across organisms