Experiment set22S225 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

200 most important genes:

  gene name fitness t score description  
Atu1140 -7.3 -4.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1750 -6.9 -4.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1844 -6.5 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu2040 -5.7 -3.9 phosphoserine phosphatase compare
Atu3754 -5.6 -4.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1075 -5.5 -9.5 amidophosphoribosyltransferase compare
Atu0647 -5.5 -6.5 phosphoribosylamine--glycine ligase compare
Atu0399 -5.3 -6.3 dihydroorotase compare
Atu0038 -5.2 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0679 -5.1 -3.5 ATP phosphoribosyltransferase compare
Atu1141 -5.0 -7.7 Phosphoribosylglycinamide synthetase compare
Atu1850 -5.0 -4.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1307 -4.9 -11.8 dihydroorotase compare
Atu4616 -4.8 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu2522 -4.7 -16.1 agrobacterium chromosomal virulence protein B compare
Atu1845 -4.7 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -4.5 -10.0 orotidine 5 compare
Atu1308 -4.5 -6.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0486 -4.4 -5.8 dihydroorotate dehydrogenase compare
Atu3885 -4.3 -7.1 inositol monophosphatase compare
Atu0678 -4.1 -2.8 histidyl-tRNA synthetase compare
Atu4166 -4.1 -2.4 UDP-glucose 4-epimerase compare
Atu4711 -4.1 -7.1 two component sensor kinase compare
Atu2183 -4.1 -12.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2650 -3.9 -15.2 glycerol-3-phosphate dehydrogenase compare
Atu3755 -3.9 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4618 -3.8 -14.7 dTDP-rhamnose-3,5-epimerase compare
Atu1030 -3.7 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0400 -3.7 -6.6 orotate phosphoribosyltransferase compare
Atu3353 -3.6 -13.0 mannose-1-phosphate guanylyltransferase compare
Atu6020 -3.6 -9.2 conserved hypothetical protein compare
Atu1422 -3.6 -12.0 transcriptional regulator, MarR family compare
Atu0537 -3.5 -3.4 histidinol dehydrogenase compare
Atu6019 -3.5 -21.6 D-nopaline dehydrogenase compare
Atu3706 -3.5 -6.2 D-3-phosphoglycerate dehydrogenase compare
Atu1359 -3.4 -1.6 dnaK deletion suppressor protein compare
Atu8167 -3.4 -13.0 putative transmembrane protein compare
Atu1205 -3.4 -13.5 threonine dehydratase compare
Atu3311 -3.3 -15.9 phosphomannose isomerase compare
Atu4617 -3.2 -13.7 dTDP-D-glucose-4,6-dehydratase compare
Atu4615 -3.2 -12.1 glucose-1-phosphate thymidylyltransferase compare
Atu4614 -3.1 -8.7 glycosyltransferase compare
Atu4613 -3.0 -16.4 glycosyltransferase compare
Atu2347 -2.9 -12.7 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1417 -2.9 -7.1 enoyl-CoA hydratase compare
Atu0769 -2.9 -2.4 protoheme IX farnesyltransferase compare
Atu0784 -2.9 -4.9 hypothetical protein compare
Atu3908 -2.9 -14.6 GntR family transcriptional regulator compare
Atu6021 -2.9 -15.5 D-nopaline dehydrogenase compare
Atu2718 -2.8 -9.0 homoserine O-succinyltransferase compare
Atu2264 -2.8 -10.0 2-isopropylmalate synthase compare
Atu1470 -2.8 -1.7 Camphor resistance protein compare
Atu2521 -2.8 -15.0 Protein regulated by acid pH compare
Atu1705 -2.7 -9.6 SEC-independent protein translocase protein compare
Atu2439 -2.7 -1.2 hypothetical protein compare
Atu2289 -2.7 -10.9 anthranilate synthase component I and II compare
Atu0050 -2.7 -5.6 two component response regulator compare
Atu6144 -2.7 -15.8 agrocinopine phosphodiesterase compare
Atu4502 -2.6 -9.8 cobalamin synthesis protein compare
Atu3707 -2.6 -1.8 phosphoserine aminotransferase compare
Atu2346 -2.6 -12.8 ABC transporter, membrane spanning protein (sugar) compare
Atu0361 -2.6 -2.3 transcriptional regulator compare
Atu0043 -2.6 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu2709 -2.5 -15.4 3-isopropylmalate dehydratase, large subunit compare
Atu1327 -2.4 -4.8 NADH-ubiquinone oxidoreductase compare
Atu2791 -2.4 -9.2 3-isopropylmalate dehydrogenase compare
Atu0030 -2.3 -2.1 phosphocarrier protein HPr compare
Atu2207 -2.2 -4.8 two component sensor kinase compare
Atu0269 -2.2 -5.4 exodeoxyribonuclease VII large subunit compare
Atu2379 -2.2 -11.8 phosphomannomutase compare
Atu0099 -2.2 -11.4 prephenate dehydratase compare
Atu3008 -2.1 -1.1 hypothetical protein compare
Atu0189 -2.1 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0041 -2.1 -1.2 glutamine amidotransferase compare
Atu2555 -2.1 -3.3 L-lysine 2,3-aminomutase compare
Atu1687 -2.0 -3.1 anthranilate phosphoribosyltransferase compare
Atu4499 -2.0 -7.5 hypothetical protein compare
Atu6131 -1.9 -6.6 TraR Antiactivator compare
Atu4609 -1.9 -9.4 glycosyltransferase compare
Atu2083 -1.9 -3.3 DNA repair protein RecN compare
Atu0188 -1.8 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu6016 -1.8 -12.6 ornithine cyclodeaminase compare
Atu4608 -1.7 -10.9 hypothetical protein compare
Atu1588 -1.7 -5.4 homoserine dehydrogenase compare
Atu1774 -1.7 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu3469 -1.7 -3.2 phosphoglyceromutase compare
Atu4610 -1.7 -8.4 sugar nucleotide epimerase/dehydratase compare
Atu1419 -1.7 -3.8 transcriptional regulator, GntR family compare
Atu4055 -1.7 -5.9 endo-1,3-1,4-beta-glycanase compare
Atu1679 -1.7 -2.4 peptidyl prolyl cis-trans isomerase compare
Atu0040 -1.6 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3598 -1.6 -1.7 thiol:disulfide interchange protein compare
Atu4773 -1.6 -2.0 two component response regulator compare
Atu1760 -1.6 -1.1 hypothetical protein compare
Atu0039 -1.6 -1.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0071 -1.6 -6.7 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu1163 -1.6 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6017 -1.5 -11.9 NAD/NADP octopine/nopaline dehydrogenase compare
Atu4498 -1.5 -7.5 hypothetical protein compare
Atu0141 -1.5 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu3012 -1.5 -1.9 hypothetical protein compare
Atu0190 -1.5 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0070 -1.5 -6.3 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu4019 -1.5 -6.8 two component response regulator compare
Atu0086 -1.5 -1.1 ribosome-binding factor A compare
Atu3009 -1.4 -1.3 exopolysaccharide production protein compare
Atu4018 -1.4 -6.3 two component sensor kinase compare
Atu2217 -1.4 -3.6 hypothetical protein compare
Atu2073 -1.4 -5.0 membrane protein compare
Atu6025 -1.4 -10.7 ABC transporter, membrane spanning protein (nopaline) compare
Atu2640 -1.4 -2.9 hypothetical protein compare
Atu6141 -1.4 -9.9 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu6018 -1.4 -10.4 arginase compare
Atu6139 -1.4 -11.4 ABC transporter, substrate binding protein (agrocinopines A and B) compare
Atu0533 -1.4 -2.0 putative inhibitor of septum formation compare
Atu6150 -1.4 -8.4 P-450 monooxygenase compare
Atu0153 -1.4 -3.3 transcriptional regulator, Fur family compare
Atu6027 -1.4 -7.7 ABC transporter, substrate binding protein (nopaline) compare
Atu2057 -1.4 -2.0 DNA helicase II compare
Atu6143 -1.4 -9.5 ABC transporter, membrane spanning protein (agrocinopine) compare
Atu6026 -1.4 -6.2 ABC transporter, membrane spanning protein (nopaline) compare
Atu2790 -1.4 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu6142 -1.4 -10.1 ABC transporter, membrane spanning protein (agrocinopine) compare
Atu4317 -1.4 -2.5 TetR family transcriptional regulator compare
Atu1333 -1.3 -2.7 outer membrane protein compare
Atu5430 -1.3 -1.1 hypothetical protein compare
Atu3730 -1.3 -1.1 hypothetical protein compare
Atu6140 -1.3 -9.1 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu0017 -1.3 -1.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1513 -1.3 -5.0 ABC excinuclease subunit A compare
Atu1874 -1.3 -1.8 RecA protein compare
Atu2036 -1.3 -0.9 acetolactate synthase III, large subunit compare
Atu6028 -1.3 -6.9 ABC transporter, nucleotide binding/ATPase protein (nopaline) compare
Atu2728 -1.3 -0.9 beta (1-->2) glucan export ATP-binding protein compare
Atu1364 -1.3 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0142 -1.2 -2.7 cytochrome o ubiquinol oxidase subunit II compare
Atu0971 -1.2 -1.2 two component sensor kinase compare
Atu0999 -1.2 -4.3 magnesium transport protein compare
Atu0205 -1.2 -7.2 methylmalonate-semialdehyde dehydrogenase compare
Atu6029 -1.2 -8.6 transcriptional regulator, LysR family for nopaline metabolism compare
Atu2730 -1.2 -8.8 beta (1-->2) glucan biosynthesis protein compare
Atu0978 -1.2 -3.5 two component response regulator compare
Atu2615 -1.2 -2.4 hypothetical protein compare
Atu4505 -1.2 -7.4 LacI family transcriptional regulator compare
Atu6145 -1.1 -8.0 arabinose phosphate phosphatase compare
Atu1688 -1.1 -2.0 indole-3-glycerol-phosphate synthase compare
Atu4007 -1.1 -7.2 arginase compare
Atu0093 -1.1 -3.3 Recombination protein compare
Atu4217 -1.1 -1.1 TetR family transcriptional regulator compare
Atu0499 -1.1 -4.8 hypothetical protein compare
Atu4050 -1.1 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2376 -1.1 -1.1 hypothetical protein compare
Atu3719 -1.1 -5.4 MutT/nudix family protein compare
Atu1028 -1.1 -1.3 hypothetical protein compare
Atu4882 -1.1 -2.0 hypothetical protein compare
Atu4418 -1.0 -4.3 glutaryl-CoA dehydrogenase compare
Atu0434 -1.0 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1462 -1.0 -6.2 glycine cleavage system protein P2 compare
Atu1803 -1.0 -3.3 cold shock protein compare
Atu1099 -1.0 -4.6 hypothetical protein compare
Atu1076 -1.0 -2.1 colicin V production protein compare
Atu4162 -1.0 -3.8 two-component response regulator compare
Atu2722 -1.0 -4.5 porin compare
Atu1619 -1.0 -1.9 protein-export membrane protein SECG compare
Atu4346 -1.0 -2.8 hypothetical protein compare
Atu0876 -1.0 -0.9 superoxide dismutase compare
Atu4792 -1.0 -2.2 hypothetical protein compare
Atu1238 -1.0 -5.2 polysaccharide export protein compare
Atu2317 -0.9 -2.9 hypothetical protein compare
Atu0751 -0.9 -3.1 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu0477 -0.9 -1.7 hypothetical protein compare
Atu1435 -0.9 -2.4 hypothetical protein compare
Atu3740 -0.9 -4.5 fructose bisphosphate aldolase compare
Atu1344 -0.9 -1.4 hypothetical protein compare
Atu1714 -0.9 -1.0 exonuclease III compare
Atu1464 -0.9 -5.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1251 -0.9 -4.8 O-acetylhomoserine sulfhydrylase compare
Atu2772 -0.9 -2.9 Invasion protein A compare
Atu4072 -0.9 -0.8 nodulation protein N compare
Atu2554 -0.9 -1.2 lysyl-tRNA synthetase compare
Atu1708 -0.9 -4.8 hypothetical protein compare
Atu0051 -0.9 -2.5 two component sensor kinase compare
Atu3777 -0.9 -5.4 hypothetical protein compare
Atu4477 -0.9 -4.0 TetR family transcriptional regulator compare
Atu1484 -0.9 -2.3 transcriptional regulator compare
Atu2378 -0.8 -1.9 hypothetical protein compare
Atu1739 -0.8 -2.0 permease compare
Atu4685 -0.8 -4.5 LacI family transcriptional regulator compare
Atu4342 -0.8 -2.2 hypothetical protein compare
Atu6114 -0.8 -1.8 hypothetical protein compare
Atu4160 -0.8 -3.5 RNA polymerase sigma factor compare
Atu1356 -0.8 -3.6 hypothetical protein compare
Atu0386 -0.8 -1.5 hypothetical protein compare
Atu3219 -0.8 -5.7 dihydroxy-acid dehydratase compare
Atu4763 -0.8 -1.6 AsnC family transcriptional regulator compare
Atu2335 -0.8 -1.1 hypothetical protein compare
Atu0925 -0.8 -1.8 hypothetical protein compare
Atu0328 -0.8 -3.4 heat-inducible transcription repressor compare
Atu1285 -0.8 -4.2 metal dependent hydrolase compare
Atu0723 -0.8 -0.7 FAD dependent oxidoreductase compare


Specific Phenotypes

For 28 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 across organisms