Experiment set22S221 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0

Genes with specific phenotypes:

  gene name fitness t score description  
Atu6144 -2.4 -13.5 agrocinopine phosphodiesterase compare
Atu4499 -1.8 -7.2 hypothetical protein compare
Atu4019 -1.7 -7.5 two component response regulator compare
Atu6150 -1.6 -10.2 P-450 monooxygenase compare
Atu6018 -1.5 -9.9 arginase compare
Atu0071 -1.5 -7.1 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu6016 -1.5 -11.3 ornithine cyclodeaminase compare
Atu6028 -1.5 -8.5 ABC transporter, nucleotide binding/ATPase protein (nopaline) compare
Atu4018 -1.5 -6.1 two component sensor kinase compare
Atu0070 -1.5 -7.1 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu6017 -1.4 -10.6 NAD/NADP octopine/nopaline dehydrogenase compare
Atu6026 -1.4 -6.6 ABC transporter, membrane spanning protein (nopaline) compare
Atu3719 -1.3 -5.9 MutT/nudix family protein compare
Atu6025 -1.3 -9.9 ABC transporter, membrane spanning protein (nopaline) compare
Atu6141 -1.2 -8.9 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu6140 -1.2 -8.5 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu6142 -1.2 -9.5 ABC transporter, membrane spanning protein (agrocinopine) compare
Atu6139 -1.2 -9.2 ABC transporter, substrate binding protein (agrocinopines A and B) compare
Atu5104 -1.1 -5.3 hypothetical protein compare
Atu6029 -1.1 -8.6 transcriptional regulator, LysR family for nopaline metabolism compare
Atu6143 -1.1 -6.5 ABC transporter, membrane spanning protein (agrocinopine) compare
Atu4655 +1.0 7.4 ROK family transcriptional regulator compare
Atu6167 +1.3 8.2 component of type IV secretion system compare
Atu6168 +1.3 6.8 component of type IV secretion system, pilin subunit compare
Atu6164 +1.6 10.4 trans-zeatin secretion protein compare
Atu6178 +1.9 15.7 two component response regulator compare
Atu6166 +2.2 18.9 two component sensor kinase compare
Atu2348 +2.4 10.2 sugar binding protein compare


Specific phenotypes for in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 across organisms