Experiment set22S220 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.9 -4.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -6.6 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1845 -6.3 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu4711 -5.5 -6.4 two component sensor kinase compare
Atu0399 -5.3 -6.3 dihydroorotase compare
Atu0189 -5.1 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0679 -5.1 -3.5 ATP phosphoribosyltransferase compare
Atu4616 -5.1 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu2522 -5.0 -18.0 agrobacterium chromosomal virulence protein B compare
Atu6098 -4.9 -1.5 transcriptional regulator, HTH family compare
Atu0647 -4.8 -8.0 phosphoribosylamine--glycine ligase compare
Atu1075 -4.7 -9.7 amidophosphoribosyltransferase compare
Atu1308 -4.7 -10.3 aspartate carbamoyl transferase catalytic subunit compare
Atu3598 -4.5 -3.1 thiol:disulfide interchange protein compare
Atu0486 -4.5 -7.6 dihydroorotate dehydrogenase compare
Atu1141 -4.3 -6.8 Phosphoribosylglycinamide synthetase compare
Atu1844 -4.3 -3.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1140 -4.2 -7.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3885 -4.2 -7.9 inositol monophosphatase compare
Atu2040 -4.2 -6.3 phosphoserine phosphatase compare
Atu0678 -4.1 -2.8 histidyl-tRNA synthetase compare
Atu3353 -4.1 -14.5 mannose-1-phosphate guanylyltransferase compare
Atu3754 -4.1 -6.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1307 -3.9 -8.4 dihydroorotase compare
Atu1205 -3.9 -14.0 threonine dehydratase compare
Atu3908 -3.9 -14.6 GntR family transcriptional regulator compare
Atu0400 -3.9 -4.9 orotate phosphoribosyltransferase compare
Atu0141 -3.9 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0298 -3.7 -9.3 orotidine 5 compare
Atu0038 -3.7 -4.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0537 -3.7 -2.5 histidinol dehydrogenase compare
Atu1030 -3.7 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4618 -3.6 -14.3 dTDP-rhamnose-3,5-epimerase compare
Atu1422 -3.6 -14.9 transcriptional regulator, MarR family compare
Atu3706 -3.5 -6.4 D-3-phosphoglycerate dehydrogenase compare
Atu4055 -3.4 -9.7 endo-1,3-1,4-beta-glycanase compare
Atu2183 -3.4 -12.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0030 -3.4 -2.0 phosphocarrier protein HPr compare
Atu6021 -3.4 -17.6 D-nopaline dehydrogenase compare
Atu3311 -3.3 -18.3 phosphomannose isomerase compare
Atu8167 -3.3 -12.2 putative transmembrane protein compare
Atu6019 -3.2 -20.4 D-nopaline dehydrogenase compare
Atu0784 -3.1 -6.2 hypothetical protein compare
Atu4614 -3.0 -9.6 glycosyltransferase compare
Atu3755 -2.9 -4.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu6020 -2.9 -7.3 conserved hypothetical protein compare
Atu2346 -2.9 -12.8 ABC transporter, membrane spanning protein (sugar) compare
Atu1327 -2.9 -5.1 NADH-ubiquinone oxidoreductase compare
Atu2289 -2.9 -11.7 anthranilate synthase component I and II compare
Atu2692 -2.8 -3.9 intracellular septation protein compare
Atu2057 -2.7 -1.9 DNA helicase II compare
Atu1163 -2.7 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4615 -2.7 -11.4 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -2.7 -10.4 dTDP-D-glucose-4,6-dehydratase compare
Atu2439 -2.7 -1.1 hypothetical protein compare
Atu4217 -2.6 -1.3 TetR family transcriptional regulator compare
Atu4613 -2.6 -13.5 glycosyltransferase compare
Atu1417 -2.6 -7.3 enoyl-CoA hydratase compare
Atu4018 -2.6 -11.1 two component sensor kinase compare
Atu3707 -2.6 -1.7 phosphoserine aminotransferase compare
Atu6144 -2.6 -11.5 agrocinopine phosphodiesterase compare
Atu0269 -2.6 -5.5 exodeoxyribonuclease VII large subunit compare
Atu0043 -2.5 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu1714 -2.5 -1.7 exonuclease III compare
Atu4773 -2.5 -2.2 two component response regulator compare
Atu2347 -2.5 -7.9 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu6150 -2.5 -14.3 P-450 monooxygenase compare
Atu1874 -2.4 -3.3 RecA protein compare
Atu2073 -2.4 -6.8 membrane protein compare
Atu4166 -2.4 -2.6 UDP-glucose 4-epimerase compare
Atu2650 -2.4 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu0422 -2.3 -2.5 ABC transporter, membrane spanning protein compare
Atu2718 -2.3 -8.8 homoserine O-succinyltransferase compare
Atu1364 -2.3 -5.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2791 -2.3 -10.2 3-isopropylmalate dehydrogenase compare
Atu4317 -2.3 -3.4 TetR family transcriptional regulator compare
Atu6131 -2.2 -5.0 TraR Antiactivator compare
Atu4148 -2.2 -6.6 UDP-glucuronic acid epimerase compare
Atu2264 -2.2 -7.9 2-isopropylmalate synthase compare
Atu4502 -2.2 -7.0 cobalamin synthesis protein compare
Atu2379 -2.1 -13.3 phosphomannomutase compare
Atu1705 -2.1 -5.5 SEC-independent protein translocase protein compare
Atu0031 -2.1 -1.2 PTS system, IIA component compare
Atu6145 -2.1 -11.5 arabinose phosphate phosphatase compare
Atu0050 -2.1 -5.4 two component response regulator compare
Atu2684 -2.0 -2.1 hypothetical protein compare
Atu2709 -2.0 -13.5 3-isopropylmalate dehydratase, large subunit compare
Atu0099 -2.0 -6.7 prephenate dehydratase compare
Atu0041 -2.0 -1.2 glutamine amidotransferase compare
Atu1687 -2.0 -3.5 anthranilate phosphoribosyltransferase compare
Atu4498 -2.0 -8.3 hypothetical protein compare
Atu0703 -2.0 -3.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1588 -1.9 -5.8 homoserine dehydrogenase compare
Atu2052 -1.9 -3.5 hypothetical protein compare
Atu2521 -1.9 -10.6 Protein regulated by acid pH compare
Atu0769 -1.9 -1.6 protoheme IX farnesyltransferase compare
Atu2207 -1.9 -4.0 two component sensor kinase compare
Atu0361 -1.8 -2.6 transcriptional regulator compare
Atu1688 -1.8 -2.1 indole-3-glycerol-phosphate synthase compare
Atu4499 -1.8 -3.9 hypothetical protein compare
Atu0999 -1.8 -5.3 magnesium transport protein compare
Atu1683 -1.8 -2.3 hypothetical protein compare
Atu4019 -1.7 -4.5 two component response regulator compare
Atu1513 -1.7 -6.1 ABC excinuclease subunit A compare
Atu3469 -1.7 -3.5 phosphoglyceromutase compare
Atu0205 -1.7 -7.9 methylmalonate-semialdehyde dehydrogenase compare
Atu4882 -1.7 -2.8 hypothetical protein compare
Atu4608 -1.7 -10.2 hypothetical protein compare
Atu3719 -1.7 -8.4 MutT/nudix family protein compare
Atu4610 -1.6 -7.1 sugar nucleotide epimerase/dehydratase compare
Atu0017 -1.6 -1.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1803 -1.6 -4.3 cold shock protein compare
Atu0499 -1.6 -6.7 hypothetical protein compare
Atu0040 -1.6 -0.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1566 -1.6 -1.6 hypothetical protein compare
Atu0328 -1.5 -5.4 heat-inducible transcription repressor compare
Atu1419 -1.5 -4.5 transcriptional regulator, GntR family compare
Atu0039 -1.5 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1359 -1.5 -1.1 dnaK deletion suppressor protein compare
Atu4609 -1.5 -7.9 glycosyltransferase compare
Atu3763 -1.5 -0.9 hypothetical protein compare
Atu1446 -1.5 -2.2 two component response regulator compare
Atu8054 -1.5 -1.1 hypothetical protein compare
Atu2554 -1.5 -1.8 lysyl-tRNA synthetase compare
Atu4505 -1.4 -7.2 LacI family transcriptional regulator compare
Atu0977 -1.4 -3.7 serine protease DO-like protease compare
Atu3739 -1.4 -2.8 phosphoglycerate kinase compare
Atu1251 -1.4 -6.0 O-acetylhomoserine sulfhydrylase compare
Atu1468 -1.4 -7.5 hypothetical protein compare
Atu0142 -1.4 -3.8 cytochrome o ubiquinol oxidase subunit II compare
Atu2790 -1.3 -1.6 3-isopropylmalate dehydratase, small subunit compare
Atu4514 -1.3 -3.3 RpiR family transcriptional regulator compare
Atu0354 -1.3 -1.9 ferric uptake regulator compare
Atu1333 -1.3 -2.6 outer membrane protein compare
Atu2640 -1.3 -2.7 hypothetical protein compare
Atu1902 -1.3 -5.2 transketolase compare
Atu2237 -1.3 -4.6 cytochrome c1 compare
Atu0190 -1.3 -3.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0093 -1.3 -4.0 Recombination protein compare
Atu2730 -1.3 -8.7 beta (1-->2) glucan biosynthesis protein compare
Atu0051 -1.3 -4.2 two component sensor kinase compare
Atu3183 -1.3 -1.0 hypothetical protein compare
Atu5125 -1.3 -2.7 GntR family transcriptional regulator compare
Atu2036 -1.3 -0.9 acetolactate synthase III, large subunit compare
Atu0976 -1.2 -3.0 cycL protein compare
Atu2728 -1.2 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu1536 -1.2 -4.1 cytochrome C oxidase, FixO chain compare
Atu2083 -1.2 -2.6 DNA repair protein RecN compare
Atu1646 -1.2 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1573 -1.2 -0.9 hypothetical protein compare
Atu0062 -1.2 -7.5 transcriptional regulator, ROK family compare
Atu1537 -1.2 -6.3 cytochrome-c oxidase, FixN chain compare
Atu1602 -1.2 -4.6 transcriptional activator, Crp family compare
Atu1647 -1.2 -4.2 ABC transporter, membrane spanning protein compare
Atu3486 -1.2 -1.5 DeoR family transcriptional regulator compare
Atu1645 -1.1 -4.8 ABC transporter, substrate binding protein compare
Atu8095 -1.1 -7.1 hypothetical protein compare
Atu1774 -1.1 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu0978 -1.1 -3.6 two component response regulator compare
Atu1739 -1.1 -3.5 permease compare
Atu2710 -1.1 -2.2 hypothetical protein compare
Atu3485 -1.1 -7.4 short chain dehydrogenase compare
Atu6114 -1.1 -1.7 hypothetical protein compare
Atu1028 -1.1 -0.5 hypothetical protein compare
Atu1527 -1.1 -4.4 nitrogen fixation protein FixS compare
Atu1838 -1.1 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu2115 -1.1 -5.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0601 -1.1 -6.6 oxidoreductase compare
Atu1464 -1.1 -3.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu0606 -1.1 -2.4 hypothetical protein compare
Atu1129 -1.0 -4.6 excinuclease ABC chain C compare
Atu3740 -1.0 -5.7 fructose bisphosphate aldolase compare
Atu2217 -1.0 -2.7 hypothetical protein compare
Atu0971 -1.0 -1.2 two component sensor kinase compare
Atu3465 -1.0 -2.1 metallo-beta-lactamase superfamily protein compare
Atu2238 -1.0 -4.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0344 -1.0 -2.2 hypothetical protein compare
Atu1534 -1.0 -4.1 cytochrome-c oxidase, FixP chain compare
Atu3466 -1.0 -1.7 ArsR family transcriptional regulator compare
Atu1708 -1.0 -3.9 hypothetical protein compare
Atu3730 -1.0 -0.9 hypothetical protein compare
Atu3219 -1.0 -6.7 dihydroxy-acid dehydratase compare
Atu1529 -1.0 -4.9 nitrogen fixation protein FixH compare
Atu1113 -1.0 -3.7 dehydrogenase compare
Atu1149 -1.0 -1.0 adenylate cyclase compare
Atu3517 -1.0 -3.8 acetyltransferase compare
Atu1173 -1.0 -5.2 MFS permease compare
Atu0101 -1.0 -2.8 cytochrome c compare
Atu8162 -1.0 -1.1 hypothetical protein compare
Atu3008 -1.0 -0.8 hypothetical protein compare
Atu1952 -1.0 -1.2 hypothetical protein compare
Atu4056 -0.9 -3.4 succinoglycan biosynthesis protein compare
Atu0225 -0.9 -0.8 hypothetical protein compare
Atu2368 -0.9 -1.0 hypothetical protein compare
Atu3777 -0.9 -4.2 hypothetical protein compare
Atu2378 -0.9 -1.9 hypothetical protein compare
Atu2376 -0.9 -1.1 hypothetical protein compare
Atu1780 -0.9 -5.6 ATP-dependent DNA helicase compare
Atu2585 -0.9 -3.6 hypothetical protein compare
Atu0801 -0.9 -6.4 chromosome segregation protein compare


Specific Phenotypes

For 12 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 across organisms