Experiment set22S215 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu2522 -8.2 -8.0 agrobacterium chromosomal virulence protein B compare
Atu4055 -7.4 -5.1 endo-1,3-1,4-beta-glycanase compare
Atu0486 -6.7 -6.5 dihydroorotate dehydrogenase compare
Atu4711 -6.6 -4.5 two component sensor kinase compare
Atu0703 -6.3 -4.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1422 -5.9 -12.0 transcriptional regulator, MarR family compare
Atu0298 -5.5 -10.5 orotidine 5 compare
Atu1750 -5.4 -4.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu2040 -5.2 -5.1 phosphoserine phosphatase compare
Atu1075 -5.1 -8.8 amidophosphoribosyltransferase compare
Atu1844 -5.1 -4.6 Phosphoribosylformylglycinamidine synthetase compare
Atu0038 -5.0 -3.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1205 -5.0 -15.6 threonine dehydratase compare
Atu0679 -4.9 -3.4 ATP phosphoribosyltransferase compare
Atu6098 -4.9 -1.8 transcriptional regulator, HTH family compare
Atu1307 -4.9 -8.2 dihydroorotase compare
Atu1359 -4.8 -1.8 dnaK deletion suppressor protein compare
Atu1845 -4.8 -5.6 phosphoribosylformylglycinamidine synthase I compare
Atu1141 -4.7 -10.5 Phosphoribosylglycinamide synthetase compare
Atu0031 -4.6 -1.7 PTS system, IIA component compare
Atu1850 -4.5 -4.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0399 -4.5 -8.5 dihydroorotase compare
Atu2183 -4.2 -12.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0647 -4.2 -10.0 phosphoribosylamine--glycine ligase compare
Atu2289 -4.1 -8.2 anthranilate synthase component I and II compare
Atu0678 -4.0 -2.8 histidyl-tRNA synthetase compare
Atu3706 -4.0 -5.5 D-3-phosphoglycerate dehydrogenase compare
Atu3353 -4.0 -14.9 mannose-1-phosphate guanylyltransferase compare
Atu0769 -4.0 -2.7 protoheme IX farnesyltransferase compare
Atu1308 -3.9 -10.3 aspartate carbamoyl transferase catalytic subunit compare
Atu3908 -3.8 -16.1 GntR family transcriptional regulator compare
Atu6021 -3.8 -16.2 D-nopaline dehydrogenase compare
Atu0400 -3.8 -7.6 orotate phosphoribosyltransferase compare
Atu8167 -3.7 -13.7 putative transmembrane protein compare
Atu0784 -3.7 -7.1 hypothetical protein compare
Atu3311 -3.7 -17.5 phosphomannose isomerase compare
Atu1030 -3.7 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2073 -3.7 -6.8 membrane protein compare
Atu3754 -3.7 -8.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4166 -3.6 -3.1 UDP-glucose 4-epimerase compare
Atu1417 -3.6 -7.7 enoyl-CoA hydratase compare
Atu0537 -3.6 -2.5 histidinol dehydrogenase compare
Atu0269 -3.6 -4.9 exodeoxyribonuclease VII large subunit compare
Atu6019 -3.6 -19.1 D-nopaline dehydrogenase compare
Atu3755 -3.6 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4614 -3.4 -10.4 glycosyltransferase compare
Atu1140 -3.4 -6.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2791 -3.4 -9.6 3-isopropylmalate dehydrogenase compare
Atu4615 -3.3 -13.0 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -3.3 -15.2 dTDP-rhamnose-3,5-epimerase compare
Atu2718 -3.3 -8.5 homoserine O-succinyltransferase compare
Atu6150 -3.3 -17.3 P-450 monooxygenase compare
Atu2521 -3.2 -18.1 Protein regulated by acid pH compare
Atu1419 -3.2 -6.1 transcriptional regulator, GntR family compare
Atu4617 -3.2 -13.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2264 -3.1 -10.8 2-isopropylmalate synthase compare
Atu3885 -3.1 -6.7 inositol monophosphatase compare
Atu3008 -3.1 -1.6 hypothetical protein compare
Atu0099 -3.0 -8.4 prephenate dehydratase compare
Atu4613 -3.0 -13.2 glycosyltransferase compare
Atu6144 -3.0 -17.0 agrocinopine phosphodiesterase compare
Atu4773 -3.0 -3.1 two component response regulator compare
Atu1705 -3.0 -4.8 SEC-independent protein translocase protein compare
Atu6020 -3.0 -7.6 conserved hypothetical protein compare
Atu2347 -3.0 -11.3 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2346 -2.9 -14.6 ABC transporter, membrane spanning protein (sugar) compare
Atu0331 -2.9 -4.4 sigma-54 modulation protein compare
Atu2692 -2.9 -5.1 intracellular septation protein compare
Atu8138 -2.9 -2.1 hypothetical protein compare
Atu2125 -2.8 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1683 -2.8 -2.1 hypothetical protein compare
Atu2709 -2.8 -17.9 3-isopropylmalate dehydratase, large subunit compare
Atu1327 -2.7 -5.7 NADH-ubiquinone oxidoreductase compare
Atu3719 -2.6 -8.5 MutT/nudix family protein compare
Atu3707 -2.6 -1.7 phosphoserine aminotransferase compare
Atu2439 -2.6 -1.3 hypothetical protein compare
Atu1470 -2.5 -1.7 Camphor resistance protein compare
Atu1687 -2.4 -2.9 anthranilate phosphoribosyltransferase compare
Atu0043 -2.4 -1.6 imidazoleglycerol-phosphate dehydratase compare
Atu4498 -2.3 -9.6 hypothetical protein compare
Atu3598 -2.3 -2.1 thiol:disulfide interchange protein compare
Atu1163 -2.2 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4608 -2.2 -12.2 hypothetical protein compare
Atu0361 -2.2 -2.5 transcriptional regulator compare
Atu0422 -2.1 -2.6 ABC transporter, membrane spanning protein compare
Atu4499 -2.1 -4.6 hypothetical protein compare
Atu2684 -2.1 -2.3 hypothetical protein compare
Atu2790 -2.1 -2.7 3-isopropylmalate dehydratase, small subunit compare
Atu4610 -2.1 -12.5 sugar nucleotide epimerase/dehydratase compare
Atu0153 -2.0 -5.3 transcriptional regulator, Fur family compare
Atu1468 -2.0 -9.9 hypothetical protein compare
Atu3730 -2.0 -1.4 hypothetical protein compare
Atu0050 -2.0 -5.2 two component response regulator compare
Atu4217 -1.9 -1.7 TetR family transcriptional regulator compare
Atu0041 -1.9 -1.3 glutamine amidotransferase compare
Atu4882 -1.9 -4.5 hypothetical protein compare
Atu1364 -1.9 -5.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4609 -1.8 -10.7 glycosyltransferase compare
Atu4502 -1.8 -7.6 cobalamin synthesis protein compare
Atu1588 -1.7 -5.6 homoserine dehydrogenase compare
Atu0188 -1.7 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1028 -1.6 -2.4 hypothetical protein compare
Atu4317 -1.6 -2.4 TetR family transcriptional regulator compare
Atu6178 -1.6 -10.2 two component response regulator compare
Atu2379 -1.6 -8.6 phosphomannomutase compare
Atu0017 -1.5 -1.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2217 -1.5 -4.1 hypothetical protein compare
Atu1688 -1.5 -1.8 indole-3-glycerol-phosphate synthase compare
Atu0051 -1.5 -4.6 two component sensor kinase compare
Atu3763 -1.5 -1.0 hypothetical protein compare
Atu0040 -1.5 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0978 -1.4 -3.7 two component response regulator compare
Atu0039 -1.4 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu0141 -1.4 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu2650 -1.4 -7.4 glycerol-3-phosphate dehydrogenase compare
Atu6145 -1.4 -9.1 arabinose phosphate phosphatase compare
Atu6131 -1.4 -6.0 TraR Antiactivator compare
Atu3485 -1.4 -6.9 short chain dehydrogenase compare
Atu0421 -1.3 -1.3 ABC transporter, membrane spanning protein compare
Atu1439 -1.3 -1.8 hypothetical protein compare
Atu0434 -1.3 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1354 -1.3 -0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1874 -1.3 -2.5 RecA protein compare
Atu2036 -1.3 -0.9 acetolactate synthase III, large subunit compare
Atu0354 -1.3 -2.2 ferric uptake regulator compare
Atu4148 -1.2 -5.5 UDP-glucuronic acid epimerase compare
Atu0976 -1.2 -2.8 cycL protein compare
Atu0036 -1.2 -1.8 hypothetical protein compare
Atu4897 -1.2 -1.7 hypothetical protein compare
Atu0086 -1.2 -1.1 ribosome-binding factor A compare
Atu6016 -1.2 -8.9 ornithine cyclodeaminase compare
Atu2730 -1.2 -8.8 beta (1-->2) glucan biosynthesis protein compare
Atu2237 -1.2 -3.0 cytochrome c1 compare
Atu3469 -1.2 -2.9 phosphoglyceromutase compare
Atu0690 -1.2 -1.6 hypothetical protein compare
Atu0189 -1.2 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0979 -1.1 -4.3 two component sensor kinase compare
Atu1708 -1.1 -4.0 hypothetical protein compare
Atu2238 -1.1 -4.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0876 -1.1 -1.3 superoxide dismutase compare
Atu1529 -1.1 -5.8 nitrogen fixation protein FixH compare
Atu1644 -1.1 -2.1 hypothetical protein compare
Atu3634 -1.1 -5.1 penicillin-binding protein dacf precursor compare
Atu2728 -1.1 -0.7 beta (1-->2) glucan export ATP-binding protein compare
Atu1251 -1.1 -6.0 O-acetylhomoserine sulfhydrylase compare
Atu0801 -1.1 -7.8 chromosome segregation protein compare
Atu1528 -1.1 -7.3 nitrogen fixation protein FixI compare
Atu2554 -1.1 -1.6 lysyl-tRNA synthetase compare
Atu2831 -1.1 -2.0 glucose inhibited division protein A compare
Atu1902 -1.1 -4.5 transketolase compare
Atu1513 -1.1 -4.0 ABC excinuclease subunit A compare
Atu3750 -1.1 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu3739 -1.1 -2.7 phosphoglycerate kinase compare
Atu0030 -1.1 -1.4 phosphocarrier protein HPr compare
Atu4019 -1.0 -5.4 two component response regulator compare
Atu0786 -1.0 -3.9 peptidase, family M16 compare
Atu1803 -1.0 -3.8 cold shock protein compare
Atu2648 -1.0 -3.5 hypothetical protein compare
Atu0999 -1.0 -3.6 magnesium transport protein compare
Atu2615 -1.0 -2.0 hypothetical protein compare
Atu1463 -1.0 -3.0 glycine cleavage system component H compare
Atu0142 -1.0 -3.5 cytochrome o ubiquinol oxidase subunit II compare
Atu2207 -1.0 -3.0 two component sensor kinase compare
Atu1667 -1.0 -1.3 hypothetical protein compare
Atu5125 -1.0 -2.7 GntR family transcriptional regulator compare
Atu0205 -1.0 -6.5 methylmalonate-semialdehyde dehydrogenase compare
Atu1707 -1.0 -4.3 hypothetical protein compare
Atu0477 -1.0 -1.3 hypothetical protein compare
Atu1780 -1.0 -4.9 ATP-dependent DNA helicase compare
Atu8095 -1.0 -3.5 hypothetical protein compare
Atu2722 -1.0 -4.4 porin compare
Atu1464 -0.9 -4.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu4616 -0.9 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu2710 -0.9 -1.9 hypothetical protein compare
Atu0601 -0.9 -5.0 oxidoreductase compare
Atu1182 -0.9 -1.7 hypothetical protein compare
Atu1970 -0.9 -2.2 hypothetical protein compare
Atu1219 -0.9 -0.9 hypothetical protein compare
Atu1534 -0.9 -3.7 cytochrome-c oxidase, FixP chain compare
Atu3744 -0.9 -6.3 ABC transporter permease compare
Atu1537 -0.9 -5.6 cytochrome-c oxidase, FixN chain compare
Atu1536 -0.9 -3.4 cytochrome C oxidase, FixO chain compare
Atu0029 -0.9 -3.9 S-adenosylhomocysteine hydrolase compare
Atu6143 -0.9 -6.1 ABC transporter, membrane spanning protein (agrocinopine) compare
Atu6138 -0.9 -3.9 Repressor of the acc and arc operons compare
Atu6166 -0.9 -7.5 two component sensor kinase compare
Atu1677 -0.9 -1.9 queuine tRNA-ribosyltransferase compare
Atu4050 -0.9 -2.0 UTP-glucose-1-phosphate uridylyltransferase compare
Atu1530 -0.9 -4.9 nitrogen fixation protein FixG compare
Atu3012 -0.8 -1.7 hypothetical protein compare
Atu2640 -0.8 -1.8 hypothetical protein compare
Atu1619 -0.8 -1.8 protein-export membrane protein SECG compare
Atu1646 -0.8 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2348 -0.8 -3.5 sugar binding protein compare
Atu0360 -0.8 -5.4 apolipoprotein N-acyltransferase compare
Atu6018 -0.8 -6.3 arginase compare
Atu3727 -0.8 -2.9 hypothetical protein compare
Atu6017 -0.8 -6.5 NAD/NADP octopine/nopaline dehydrogenase compare
Atu1103 -0.8 -2.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0977 -0.8 -1.7 serine protease DO-like protease compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms