Experiment set22S210 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD2.0

200 most important genes:

  gene name fitness t score description  
Atu0769 -4.2 -2.8 protoheme IX farnesyltransferase compare
Atu4317 -2.6 -4.6 TetR family transcriptional regulator compare
Atu0041 -2.1 -1.4 glutamine amidotransferase compare
Atu2125 -1.9 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0999 -1.7 -5.4 magnesium transport protein compare
Atu6098 -1.7 -1.7 transcriptional regulator, HTH family compare
Atu0039 -1.6 -1.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu3763 -1.6 -1.0 hypothetical protein compare
Atu1619 -1.6 -4.7 protein-export membrane protein SECG compare
Atu4217 -1.4 -1.5 TetR family transcriptional regulator compare
Atu8087 -1.4 -1.6 putative peptidoglycan binding protein compare
Atu3008 -1.3 -1.2 hypothetical protein compare
Atu6189 -1.3 -2.5 protein secretion chaperone compare
Atu2439 -1.3 -1.1 hypothetical protein compare
Atu3469 -1.3 -2.8 phosphoglyceromutase compare
Atu0031 -1.2 -1.3 PTS system, IIA component compare
Atu1163 -1.2 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0189 -1.2 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0050 -1.2 -4.0 two component response regulator compare
Atu1739 -1.2 -3.9 permease compare
Atu0533 -1.2 -1.9 putative inhibitor of septum formation compare
Atu5540 -1.1 -1.7 hypothetical protein compare
Atu0190 -1.1 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1356 -1.1 -7.2 hypothetical protein compare
Atu2057 -1.0 -1.9 DNA helicase II compare
Atu1844 -1.0 -2.2 Phosphoribosylformylglycinamidine synthetase compare
Atu2441 -1.0 -2.4 RNA methylase compare
Atu3598 -1.0 -2.0 thiol:disulfide interchange protein compare
Atu2083 -1.0 -2.6 DNA repair protein RecN compare
Atu1634 -1.0 -1.9 hypothetical protein compare
Atu4896 -1.0 -1.6 acetyltransferase compare
Atu0142 -0.9 -2.7 cytochrome o ubiquinol oxidase subunit II compare
Atu3740 -0.9 -6.5 fructose bisphosphate aldolase compare
Atu0925 -0.9 -3.2 hypothetical protein compare
Atu3663 -0.9 -2.5 hypothetical protein compare
Atu4161 -0.9 -1.9 hypothetical protein compare
Atu2217 -0.9 -4.1 hypothetical protein compare
Atu1566 -0.9 -1.5 hypothetical protein compare
Atu2728 -0.9 -1.1 beta (1-->2) glucan export ATP-binding protein compare
Atu4711 -0.9 -4.0 two component sensor kinase compare
Atu0070 -0.9 -6.3 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1464 -0.9 -2.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu2684 -0.9 -1.6 hypothetical protein compare
Atu1793 -0.9 -5.1 phosphatidylcholine synthase compare
Atu1009 -0.9 -2.7 hypothetical protein compare
Atu0723 -0.9 -0.5 FAD dependent oxidoreductase compare
Atu3712 -0.9 -1.4 hypothetical protein compare
Atu0071 -0.8 -4.2 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2184 -0.8 -4.5 transcriptional regulator, AsnC family compare
Atu1357 -0.8 -6.0 hypothetical protein compare
Atu2052 -0.8 -2.4 hypothetical protein compare
Atu1182 -0.8 -1.7 hypothetical protein compare
Atu3707 -0.8 -1.1 phosphoserine aminotransferase compare
Atu1850 -0.8 -2.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1513 -0.8 -3.2 ABC excinuclease subunit A compare
Atu3518 -0.8 -4.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1417 -0.8 -4.4 enoyl-CoA hydratase compare
Atu2043 -0.8 -5.0 htrA family protein compare
Atu0876 -0.8 -0.9 superoxide dismutase compare
Atu2787 -0.8 -1.1 hypothetical protein compare
Atu2616 -0.8 -1.5 hypothetical protein compare
Atu1359 -0.8 -1.0 dnaK deletion suppressor protein compare
Atu0399 -0.7 -3.3 dihydroorotase compare
Atu2615 -0.7 -1.6 hypothetical protein compare
Atu0269 -0.7 -2.7 exodeoxyribonuclease VII large subunit compare
Atu2077 -0.7 -2.3 DNA polymerase III, epsilon subunit compare
Atu8167 -0.7 -4.7 putative transmembrane protein compare
Atu2464 -0.7 -0.6 formyltetrahydrofolate deformylase compare
Atu1774 -0.7 -2.7 ABC transporter, substrate binding protein (peptide) compare
Atu0141 -0.7 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu4072 -0.7 -0.9 nodulation protein N compare
Atu3345 -0.7 -2.6 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu2555 -0.7 -1.6 L-lysine 2,3-aminomutase compare
Atu0499 -0.7 -3.8 hypothetical protein compare
Atu2710 -0.7 -1.8 hypothetical protein compare
Atu2317 -0.7 -1.9 hypothetical protein compare
Atu2484 -0.7 -1.1 hypothetical protein compare
Atu3739 -0.7 -2.1 phosphoglycerate kinase compare
Atu0035 -0.6 -4.5 phosphoenolpyruvate carboxykinase compare
Atu4502 -0.6 -3.5 cobalamin synthesis protein compare
Atu2650 -0.6 -4.9 glycerol-3-phosphate dehydrogenase compare
Atu2578 -0.6 -3.4 cAMP-dependent protein kinase regulatory subunit compare
Atu4472 -0.6 -1.9 hypothetical protein compare
Atu0486 -0.6 -3.3 dihydroorotate dehydrogenase compare
Atu0353 -0.6 -3.5 acetyltransferase compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3579 -0.6 -1.9 lactoylglutathione lyase compare
Atu2640 -0.6 -1.5 hypothetical protein compare
Atu1565 -0.6 -2.2 serine acetyltransferase compare
Atu2800 -0.6 -0.8 precorrin-3B C17-methyltransferase compare
Atu3400 -0.6 -3.1 hypothetical protein compare
Atu2115 -0.6 -3.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3757 -0.6 -1.7 hypothetical protein compare
Atu1845 -0.6 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu0107 -0.6 -1.4 hypothetical protein compare
Atu0184 -0.6 -1.5 glucokinase compare
Atu2554 -0.6 -1.3 lysyl-tRNA synthetase compare
Atu0480 -0.6 -4.2 polysaccharide biosynthesis protein compare
Atu4148 -0.6 -2.9 UDP-glucuronic acid epimerase compare
Atu8168 -0.6 -2.0 hypothetical protein compare
Atu0585 -0.6 -2.9 hypothetical protein compare
Atu0188 -0.6 -0.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2442 -0.6 -1.6 hypothetical protein compare
Atu2373 -0.5 -3.8 UDP-hexose transferase compare
Atu0923 -0.5 -2.5 hypothetical protein compare
Atu2040 -0.5 -1.8 phosphoserine phosphatase compare
Atu3697 -0.5 -1.9 ATP-dependent protease LA 2 compare
Atu4618 -0.5 -3.8 dTDP-rhamnose-3,5-epimerase compare
Atu0051 -0.5 -2.3 two component sensor kinase compare
Atu1285 -0.5 -2.8 metal dependent hydrolase compare
Atu2248 -0.5 -1.4 hypothetical protein compare
Atu2368 -0.5 -0.9 hypothetical protein compare
Atu4514 -0.5 -2.0 RpiR family transcriptional regulator compare
Atu0995 -0.5 -3.2 hypothetical protein compare
Atu0940 -0.5 -1.0 PemK protein compare
Atu3773 -0.5 -1.6 hypothetical protein compare
Atu0085 -0.5 -2.0 tRNA pseudouridine 55 synthase compare
Atu3634 -0.5 -2.9 penicillin-binding protein dacf precursor compare
Atu1323 -0.5 -1.7 hypothetical protein compare
Atu0030 -0.5 -1.0 phosphocarrier protein HPr compare
Atu1177 -0.5 -1.6 hypothetical protein compare
Atu0535 -0.5 -2.2 hypothetical protein compare
Atu3698 -0.5 -2.2 thioredoxin compare
Atu0809 -0.5 -1.0 hypothetical protein compare
Atu3106 -0.5 -2.8 sugar ABC transporter substrate-binding protein compare
Atu3628 -0.5 -2.2 hypothetical protein compare
Atu2692 -0.5 -1.3 intracellular septation protein compare
Atu5475 -0.5 -1.1 hypothetical protein compare
Atu0479 -0.5 -2.6 ABC transporter, substrate binding protein (amino acid) compare
Atu4724 -0.5 -1.0 hypothetical protein compare
Atu1916 -0.5 -2.1 hypothetical protein compare
Atu3479 -0.5 -3.4 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu1463 -0.5 -1.9 glycine cleavage system component H compare
Atu2304 -0.5 -3.0 bacteroid development protein compare
Atu2146 -0.5 -1.7 hypothetical protein compare
Atu0647 -0.5 -2.1 phosphoribosylamine--glycine ligase compare
Atu4540 -0.5 -1.3 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1308 -0.5 -3.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -0.5 -2.8 dihydroorotase compare
Atu0045 -0.4 -3.3 heat shock chaperone compare
Atu2532 -0.4 -1.6 transcriptional regulator, MarR family compare
Atu3911 -0.4 -2.7 hypothetical protein compare
Atu0106 -0.4 -0.9 cold shock protein compare
Atu1572 -0.4 -2.4 hydrolase compare
Atu0931 -0.4 -3.1 penicillin binding protein compare
Atu0681 -0.4 -2.4 hypothetical protein compare
Atu6131 -0.4 -1.8 TraR Antiactivator compare
Atu1134 -0.4 -2.9 hypothetical protein compare
Atu4068 -0.4 -1.1 sarcosine oxidase delta subunit compare
Atu0692 -0.4 -3.3 glutathione-regulated potassium-efflux system protein compare
Atu0400 -0.4 -1.3 orotate phosphoribosyltransferase compare
Atu0689 -0.4 -2.9 ribosomal large subunit pseudouridine synthase B compare
Atu1462 -0.4 -2.9 glycine cleavage system protein P2 compare
Atu1099 -0.4 -2.5 hypothetical protein compare
Atu2055 -0.4 -2.2 HlyD family secretion protein compare
Atu8012 -0.4 -1.2 hypothetical protein compare
Atu1184 -0.4 -1.8 hypothetical protein compare
Atu0295 -0.4 -1.1 hypothetical protein compare
Atu0924 -0.4 -2.2 hypothetical protein compare
Atu3336 -0.4 -1.7 hypothetical protein compare
Atu3913 -0.4 -2.6 biotin carboxylase compare
Atu4418 -0.4 -1.2 glutaryl-CoA dehydrogenase compare
Atu5057 -0.4 -1.4 hypothetical protein compare
Atu0170 -0.4 -2.0 hypothetical protein compare
Atu1535 -0.4 -1.7 cytochrome c oxidase, FixQ chain compare
Atu0368 -0.4 -1.9 tRNA pseudouridine synthase I compare
Atu2655 -0.4 -2.5 hypothetical protein compare
Atu0043 -0.4 -0.6 imidazoleglycerol-phosphate dehydratase compare
Atu1327 -0.4 -2.1 NADH-ubiquinone oxidoreductase compare
Atu5010 -0.4 -1.8 hypothetical protein compare
Atu2633 -0.4 -1.0 RhtB family transporter compare
Atu3519 -0.4 -2.5 peptidyl-prolyl cis-trans isomerase compare
Atu1780 -0.4 -2.6 ATP-dependent DNA helicase compare
Atu2183 -0.4 -3.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0401 -0.4 -2.2 fructokinase compare
Atu0893 -0.4 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu3727 -0.4 -1.5 hypothetical protein compare
Atu0435 -0.4 -1.1 tRNA-Gly compare
Atu1230 -0.4 -2.4 hypothetical protein compare
Atu0947 -0.4 -2.3 transcriptional regulator, AsnC family compare
Atu1439 -0.4 -0.5 hypothetical protein compare
Atu0421 -0.4 -0.6 ABC transporter, membrane spanning protein compare
Atu0922 -0.4 -1.7 hypothetical protein compare
Atu2352 -0.4 -1.0 hypothetical protein compare
Atu0103 -0.4 -3.0 penicillin-binding protein compare
Atu3162 -0.4 -2.3 LacI family transcriptional regulator compare
Atu4093 -0.4 -1.2 hypothetical protein compare
Atu4469 -0.4 -0.9 iron ABC transporter permease compare
Atu4819 -0.4 -1.8 hypothetical protein compare
Atu4099 -0.4 -2.6 hypothetical protein compare
Atu0135 -0.4 -1.8 uracil phosphoribosyltransferase compare
Atu2824 -0.4 -1.2 hypothetical protein compare
Atu2224 -0.4 -2.1 aldehyde dehydrogenase compare
Atu0446 -0.4 -2.0 hypothetical protein compare
Atu0972 -0.4 -0.8 lipA protein compare
Atu1344 -0.4 -0.9 hypothetical protein compare
Atu0601 -0.4 -2.5 oxidoreductase compare
Atu1038 -0.4 -1.5 two component response regulator compare
Atu1683 -0.4 -0.8 hypothetical protein compare
Atu0298 -0.4 -2.5 orotidine 5 compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od2.0 experiments

For benthi_leaf_lb with c58c1od2.0 coculture with C58C1OD2.0 across organisms