Experiment set22S207 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD2.0

200 most important genes:

  gene name fitness t score description  
Atu2439 -2.8 -1.6 hypothetical protein compare
Atu0141 -2.6 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu0354 -2.5 -3.3 ferric uptake regulator compare
Atu6098 -2.4 -2.0 transcriptional regulator, HTH family compare
Atu4616 -2.3 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu3469 -1.8 -3.2 phosphoglyceromutase compare
Atu4317 -1.8 -3.7 TetR family transcriptional regulator compare
Atu0189 -1.8 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0769 -1.7 -2.3 protoheme IX farnesyltransferase compare
Atu3763 -1.6 -1.1 hypothetical protein compare
Atu1774 -1.6 -4.9 ABC transporter, substrate binding protein (peptide) compare
Atu2125 -1.5 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0190 -1.4 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1446 -1.3 -2.5 two component response regulator compare
Atu0999 -1.3 -4.8 magnesium transport protein compare
Atu2217 -1.3 -4.2 hypothetical protein compare
Atu0086 -1.2 -0.9 ribosome-binding factor A compare
Atu1357 -1.2 -8.2 hypothetical protein compare
Atu1030 -1.2 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0533 -1.2 -4.7 putative inhibitor of septum formation compare
Atu1793 -1.2 -5.3 phosphatidylcholine synthase compare
Atu2204 -1.2 -2.7 hypothetical protein compare
Atu2684 -1.1 -1.9 hypothetical protein compare
Atu4217 -1.1 -1.0 TetR family transcriptional regulator compare
Atu1356 -1.1 -5.5 hypothetical protein compare
Atu0894 -1.1 -1.4 ABC transporter, membrane spanning protein compare
Atu0977 -1.1 -3.2 serine protease DO-like protease compare
Atu2057 -1.0 -1.8 DNA helicase II compare
Atu0399 -1.0 -5.1 dihydroorotase compare
Atu0971 -1.0 -1.4 two component sensor kinase compare
Atu1619 -1.0 -2.9 protein-export membrane protein SECG compare
Atu2235 -1.0 -3.0 hypothetical protein compare
Atu0041 -1.0 -0.8 glutamine amidotransferase compare
Atu1028 -1.0 -2.2 hypothetical protein compare
Atu1344 -1.0 -2.5 hypothetical protein compare
Atu4897 -0.9 -1.3 hypothetical protein compare
Atu0925 -0.9 -2.2 hypothetical protein compare
Atu0030 -0.9 -1.6 phosphocarrier protein HPr compare
Atu3740 -0.9 -5.3 fructose bisphosphate aldolase compare
Atu1850 -0.9 -3.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2692 -0.9 -3.0 intracellular septation protein compare
Atu1739 -0.9 -3.2 permease compare
Atu0031 -0.9 -1.0 PTS system, IIA component compare
Atu0070 -0.9 -5.8 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu2722 -0.9 -5.2 porin compare
Atu0188 -0.8 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu2043 -0.8 -5.5 htrA family protein compare
Atu0050 -0.8 -3.3 two component response regulator compare
Atu0071 -0.8 -4.8 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu1359 -0.8 -1.0 dnaK deletion suppressor protein compare
Atu0184 -0.8 -3.0 glucokinase compare
Atu0142 -0.8 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0784 -0.8 -1.7 hypothetical protein compare
Atu0040 -0.8 -0.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2662 -0.7 -1.1 acetyltransferase compare
Atu2640 -0.7 -1.8 hypothetical protein compare
Atu3467 -0.7 -1.0 hypothetical protein compare
Atu0043 -0.7 -1.0 imidazoleglycerol-phosphate dehydratase compare
Atu2824 -0.7 -2.0 hypothetical protein compare
Atu1339 -0.7 -3.0 ribonuclease E compare
Atu4187 -0.7 -1.2 tRNA-Met compare
Atu4838 -0.7 -3.6 outer membrane lipoprotein compare
Atu1513 -0.7 -3.4 ABC excinuclease subunit A compare
Atu2555 -0.7 -1.8 L-lysine 2,3-aminomutase compare
Atu8167 -0.7 -4.5 putative transmembrane protein compare
Atu8195 -0.7 -1.2 hypothetical protein compare
Atu2682 -0.7 -2.2 hypothetical protein compare
Atu4711 -0.7 -3.1 two component sensor kinase compare
Atu0035 -0.7 -4.4 phosphoenolpyruvate carboxykinase compare
Atu0647 -0.7 -3.1 phosphoribosylamine--glycine ligase compare
Atu2115 -0.7 -4.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0499 -0.7 -3.6 hypothetical protein compare
Atu2083 -0.7 -2.5 DNA repair protein RecN compare
Atu4502 -0.7 -3.0 cobalamin synthesis protein compare
Atu3727 -0.7 -2.1 hypothetical protein compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu8087 -0.6 -1.0 putative peptidoglycan binding protein compare
Atu2304 -0.6 -5.0 bacteroid development protein compare
Atu4618 -0.6 -4.1 dTDP-rhamnose-3,5-epimerase compare
Atu0479 -0.6 -3.1 ABC transporter, substrate binding protein (amino acid) compare
Atu2650 -0.6 -3.8 glycerol-3-phosphate dehydrogenase compare
Atu2578 -0.6 -2.4 cAMP-dependent protein kinase regulatory subunit compare
Atu1464 -0.6 -2.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu5540 -0.6 -1.1 hypothetical protein compare
Atu3427 -0.6 -2.5 hypothetical protein compare
Atu0723 -0.6 -0.5 FAD dependent oxidoreductase compare
Atu2040 -0.6 -2.5 phosphoserine phosphatase compare
Atu3750 -0.6 -1.3 thiamine-phosphate pyrophosphorylase compare
Atu0480 -0.6 -4.5 polysaccharide biosynthesis protein compare
Atu1845 -0.6 -1.7 phosphoribosylformylglycinamidine synthase I compare
Atu2832 -0.6 -1.7 tRNA modification GTPase compare
Atu1364 -0.6 -2.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2237 -0.6 -2.7 cytochrome c1 compare
Atu1163 -0.6 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2532 -0.6 -2.8 transcriptional regulator, MarR family compare
Atu2184 -0.6 -3.0 transcriptional regulator, AsnC family compare
Atu4166 -0.6 -1.7 UDP-glucose 4-epimerase compare
Atu2368 -0.6 -0.8 hypothetical protein compare
Atu4773 -0.6 -1.3 two component response regulator compare
Atu1463 -0.6 -2.5 glycine cleavage system component H compare
Atu1607 -0.6 -2.1 DNA repair protein compare
Atu2026 -0.6 -1.9 exodeoxyribonuclease V compare
Atu3730 -0.6 -0.7 hypothetical protein compare
Atu0931 -0.6 -3.9 penicillin binding protein compare
Atu3697 -0.6 -1.9 ATP-dependent protease LA 2 compare
Atu0953 -0.6 -0.8 hypothetical protein compare
Atu3518 -0.6 -3.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3519 -0.6 -3.3 peptidyl-prolyl cis-trans isomerase compare
Atu0947 -0.5 -2.2 transcriptional regulator, AsnC family compare
Atu3886 -0.5 -3.5 lysophospholipase compare
Atu1714 -0.5 -0.9 exonuclease III compare
Atu3739 -0.5 -1.9 phosphoglycerate kinase compare
Atu1602 -0.5 -2.5 transcriptional activator, Crp family compare
Atu0535 -0.5 -2.1 hypothetical protein compare
Atu2073 -0.5 -2.1 membrane protein compare
Atu2554 -0.5 -1.0 lysyl-tRNA synthetase compare
Atu0353 -0.5 -3.1 acetyltransferase compare
Atu0269 -0.5 -2.1 exodeoxyribonuclease VII large subunit compare
Atu2317 -0.5 -1.7 hypothetical protein compare
Atu8145 -0.5 -2.0 hypothetical protein compare
Atu2259 -0.5 -2.1 MFS permease compare
Atu0920 -0.5 -1.9 hypothetical protein compare
Atu5468 -0.5 -0.9 hypothetical protein compare
Atu4840 -0.5 -1.7 hypothetical protein compare
Atu0486 -0.5 -2.6 dihydroorotate dehydrogenase compare
Atu3517 -0.5 -2.9 acetyltransferase compare
Atu1916 -0.5 -2.3 hypothetical protein compare
Atu0107 -0.5 -2.0 hypothetical protein compare
Atu0331 -0.5 -1.2 sigma-54 modulation protein compare
Atu1327 -0.5 -2.4 NADH-ubiquinone oxidoreductase compare
Atu0689 -0.5 -3.5 ribosomal large subunit pseudouridine synthase B compare
Atu4514 -0.5 -2.3 RpiR family transcriptional regulator compare
Atu1203 -0.5 -1.8 hypothetical protein compare
Atu2633 -0.5 -1.3 RhtB family transporter compare
Atu3628 -0.5 -1.5 hypothetical protein compare
Atu4766 -0.5 -1.9 hypothetical protein compare
Atu1577 -0.5 -2.4 ABC transporter, substrate binding protein (amino acid) compare
Atu2472 -0.5 -1.3 hypothetical protein compare
Atu0051 -0.5 -1.8 two component sensor kinase compare
Atu3230 -0.5 -2.5 hypothetical protein compare
Atu0692 -0.5 -3.4 glutathione-regulated potassium-efflux system protein compare
Atu0859 -0.5 -1.2 hypothetical protein compare
Atu0556 -0.5 -2.0 hypothetical protein compare
Atu0749 -0.5 -1.5 biotin synthesis BioY protein compare
Atu4825 -0.5 -2.1 dehydrogenase compare
Atu1679 -0.5 -0.9 peptidyl prolyl cis-trans isomerase compare
Atu1844 -0.4 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu1219 -0.4 -0.7 hypothetical protein compare
Atu0893 -0.4 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0690 -0.4 -1.2 hypothetical protein compare
Atu3486 -0.4 -1.3 DeoR family transcriptional regulator compare
Atu0566 -0.4 -0.7 hypothetical protein compare
Atu1904 -0.4 -1.6 transcriptional regulator compare
Atu1874 -0.4 -1.1 RecA protein compare
Atu2606 -0.4 -2.1 transcriptional regulator, GntR family compare
Atu4133 -0.4 -1.2 hypothetical protein compare
Atu4418 -0.4 -1.6 glutaryl-CoA dehydrogenase compare
Atu1177 -0.4 -1.7 hypothetical protein compare
Atu1705 -0.4 -1.5 SEC-independent protein translocase protein compare
Atu2615 -0.4 -1.1 hypothetical protein compare
Atu8010 -0.4 -1.6 hypothetical protein compare
Atu1546 -0.4 -2.0 transcriptional regulator, MerR family compare
Atu3799 -0.4 -2.8 GntR family transcriptional regulator compare
Atu0251 -0.4 -3.4 hypothetical protein compare
Atu1129 -0.4 -2.5 excinuclease ABC chain C compare
Atu1291 -0.4 -0.8 hypothetical protein compare
Atu0422 -0.4 -0.5 ABC transporter, membrane spanning protein compare
Atu3428 -0.4 -1.9 hypothetical protein compare
Atu3613 -0.4 -2.1 hypothetical protein compare
Atu1777 -0.4 -1.3 hypothetical protein compare
Atu4072 -0.4 -0.5 nodulation protein N compare
Atu3911 -0.4 -2.5 hypothetical protein compare
Atu1971 -0.4 -2.0 hypothetical protein compare
Atu5470 -0.4 -1.0 hypothetical protein compare
Atu3777 -0.4 -2.4 hypothetical protein compare
Atu2592 -0.4 -2.4 hypothetical protein compare
Atu3400 -0.4 -2.1 hypothetical protein compare
Atu1722 -0.4 -1.2 hypothetical protein compare
Atu1750 -0.4 -1.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu0322 -0.4 -1.5 enoyl CoA hydratase compare
Atu1644 -0.4 -1.4 hypothetical protein compare
Atu2675 -0.4 -1.2 hypothetical protein compare
Atu2373 -0.4 -3.2 UDP-hexose transferase compare
Atu0044 -0.4 -2.3 heat shock protein hslV compare
Atu2526 -0.4 -1.9 hypothetical protein compare
Atu0401 -0.4 -1.9 fructokinase compare
Atu4541 -0.4 -1.5 carboxymuconolactone decarboxylase compare
Atu0986 -0.4 -0.8 hypothetical protein compare
Atu1184 -0.4 -1.4 hypothetical protein compare
Atu2618 -0.4 -2.2 methyl-accepting chemotaxis protein compare
Atu4724 -0.4 -1.5 hypothetical protein compare
Atu1518 -0.4 -1.3 transcriptional regulator, Fur family compare
Atu6131 -0.4 -2.2 TraR Antiactivator compare
Atu0923 -0.4 -1.8 hypothetical protein compare
Atu0812 -0.4 -1.3 hypothetical protein compare
Atu3634 -0.4 -1.8 penicillin-binding protein dacf precursor compare
Atu2001 -0.4 -2.7 excinuclease ABC subunit B compare
Atu0045 -0.4 -2.5 heat shock chaperone compare
Atu1238 -0.4 -2.7 polysaccharide export protein compare
Atu4610 -0.4 -2.9 sugar nucleotide epimerase/dehydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od2.0 experiments

For benthi_leaf_lb with c58c1od2.0 coculture with C58C1OD2.0 across organisms