Experiment set22S206 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD2.0

200 most important genes:

  gene name fitness t score description  
Atu6098 -1.8 -1.7 transcriptional regulator, HTH family compare
Atu2439 -1.8 -1.5 hypothetical protein compare
Atu4317 -1.8 -3.7 TetR family transcriptional regulator compare
Atu0977 -1.8 -3.9 serine protease DO-like protease compare
Atu0354 -1.7 -2.6 ferric uptake regulator compare
Atu0141 -1.7 -1.8 cytochrome O ubiquinol oxidase subunit I compare
Atu3469 -1.7 -3.5 phosphoglyceromutase compare
Atu1359 -1.6 -1.7 dnaK deletion suppressor protein compare
Atu3763 -1.6 -1.1 hypothetical protein compare
Atu2684 -1.6 -1.8 hypothetical protein compare
Atu0999 -1.6 -5.0 magnesium transport protein compare
Atu3468 -1.5 -1.2 hypothetical protein compare
Atu4217 -1.5 -1.5 TetR family transcriptional regulator compare
Atu0043 -1.5 -1.6 imidazoleglycerol-phosphate dehydratase compare
Atu0086 -1.5 -1.4 ribosome-binding factor A compare
Atu0331 -1.4 -3.1 sigma-54 modulation protein compare
Atu2615 -1.3 -2.2 hypothetical protein compare
Atu1446 -1.3 -2.2 two component response regulator compare
Atu0070 -1.3 -7.1 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu0031 -1.2 -1.3 PTS system, IIA component compare
Atu0189 -1.2 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1760 -1.2 -1.2 hypothetical protein compare
Atu0190 -1.1 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1619 -1.1 -3.7 protein-export membrane protein SECG compare
Atu1356 -1.1 -7.8 hypothetical protein compare
Atu0071 -1.1 -6.7 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2125 -1.1 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0036 -1.1 -2.5 hypothetical protein compare
Atu0041 -1.1 -1.0 glutamine amidotransferase compare
Atu1739 -1.1 -3.5 permease compare
Atu2633 -1.0 -2.4 RhtB family transporter compare
Atu2554 -1.0 -2.0 lysyl-tRNA synthetase compare
Atu1793 -1.0 -6.5 phosphatidylcholine synthase compare
Atu1844 -1.0 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu1357 -1.0 -6.4 hypothetical protein compare
Atu2036 -1.0 -1.8 acetolactate synthase III, large subunit compare
Atu1683 -1.0 -1.7 hypothetical protein compare
Atu2616 -0.9 -1.7 hypothetical protein compare
Atu1850 -0.9 -4.0 phosphoribosylformylglycinamidine synthetase II compare
Atu4418 -0.9 -4.5 glutaryl-CoA dehydrogenase compare
Atu0269 -0.9 -3.3 exodeoxyribonuclease VII large subunit compare
Atu0784 -0.9 -3.3 hypothetical protein compare
Atu2555 -0.9 -1.8 L-lysine 2,3-aminomutase compare
Atu1417 -0.9 -4.9 enoyl-CoA hydratase compare
Atu1464 -0.9 -3.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0399 -0.9 -4.2 dihydroorotase compare
Atu2217 -0.9 -3.6 hypothetical protein compare
Atu4616 -0.9 -1.4 dTDP-4-dehydrorhamnose reductase compare
Atu2532 -0.9 -3.0 transcriptional regulator, MarR family compare
Atu0142 -0.9 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu1810 -0.8 -0.7 hypothetical protein compare
Atu0535 -0.8 -3.5 hypothetical protein compare
Atu5102 -0.8 -4.2 hypothetical protein compare
Atu0769 -0.8 -1.3 protoheme IX farnesyltransferase compare
Atu5106 -0.8 -2.0 DNA binding protein compare
Atu0894 -0.8 -1.1 ABC transporter, membrane spanning protein compare
Atu1513 -0.8 -3.5 ABC excinuclease subunit A compare
Atu1774 -0.8 -3.1 ABC transporter, substrate binding protein (peptide) compare
Atu1679 -0.8 -1.8 peptidyl prolyl cis-trans isomerase compare
Atu1463 -0.8 -4.0 glycine cleavage system component H compare
Atu0647 -0.8 -4.4 phosphoribosylamine--glycine ligase compare
Atu2057 -0.8 -1.5 DNA helicase II compare
Atu4711 -0.8 -4.0 two component sensor kinase compare
Atu0824 -0.8 -1.2 hypothetical protein compare
Atu1818 -0.8 -2.4 hypothetical protein compare
Atu3754 -0.8 -2.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3712 -0.8 -1.5 hypothetical protein compare
Atu4882 -0.8 -2.9 hypothetical protein compare
Atu2270 -0.7 -1.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu0050 -0.7 -2.4 two component response regulator compare
Atu1344 -0.7 -2.0 hypothetical protein compare
Atu5103 -0.7 -5.4 antirestriction protein compare
Atu2184 -0.7 -3.9 transcriptional regulator, AsnC family compare
Atu3009 -0.7 -0.9 exopolysaccharide production protein compare
Atu4773 -0.7 -1.0 two component response regulator compare
Atu1232 -0.7 -2.0 hypothetical protein compare
Atu1462 -0.7 -4.2 glycine cleavage system protein P2 compare
Atu1503 -0.7 -1.1 hypothetical protein compare
Atu0030 -0.7 -1.3 phosphocarrier protein HPr compare
Atu8167 -0.7 -4.9 putative transmembrane protein compare
Atu1182 -0.7 -1.8 hypothetical protein compare
Atu5108 -0.7 -4.7 conjugal transfer coupling protein TraG compare
Atu4072 -0.7 -1.0 nodulation protein N compare
Atu5104 -0.6 -3.5 hypothetical protein compare
Atu4618 -0.6 -4.5 dTDP-rhamnose-3,5-epimerase compare
Atu3706 -0.6 -3.0 D-3-phosphoglycerate dehydrogenase compare
Atu4099 -0.6 -4.2 hypothetical protein compare
Atu1364 -0.6 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3008 -0.6 -0.8 hypothetical protein compare
Atu2682 -0.6 -1.7 hypothetical protein compare
Atu1874 -0.6 -1.2 RecA protein compare
Atu2115 -0.6 -4.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1327 -0.6 -2.9 NADH-ubiquinone oxidoreductase compare
Atu0679 -0.6 -2.2 ATP phosphoribosyltransferase compare
Atu5105 -0.6 -4.1 hypothetical protein compare
Atu3465 -0.6 -1.4 metallo-beta-lactamase superfamily protein compare
Atu4379 -0.6 -4.1 cytochrome c2 compare
Atu0723 -0.6 -0.5 FAD dependent oxidoreductase compare
Atu2692 -0.6 -2.3 intracellular septation protein compare
Atu2083 -0.6 -1.8 DNA repair protein RecN compare
Atu5097 -0.6 -3.7 ATP-dependent DNA ligase compare
Atu4486 -0.6 -2.8 nitroreductase compare
Atu4541 -0.6 -2.4 carboxymuconolactone decarboxylase compare
Atu1076 -0.6 -2.2 colicin V production protein compare
Atu3613 -0.6 -2.4 hypothetical protein compare
Atu1354 -0.6 -0.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1779 -0.6 -1.5 hypothetical protein compare
Atu0480 -0.6 -3.9 polysaccharide biosynthesis protein compare
Atu4610 -0.6 -3.9 sugar nucleotide epimerase/dehydratase compare
Atu8023 -0.6 -1.5 hypothetical protein compare
Atu5096 -0.6 -4.1 hypothetical protein compare
Atu0971 -0.5 -0.8 two component sensor kinase compare
Atu4514 -0.5 -2.1 RpiR family transcriptional regulator compare
Atu6189 -0.5 -1.0 protein secretion chaperone compare
Atu1140 -0.5 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4502 -0.5 -2.8 cobalamin synthesis protein compare
Atu3910 -0.5 -2.0 LamB/YcsF family protein compare
Atu3031 -0.5 -1.1 hypothetical protein compare
Atu0502 -0.5 -3.0 acetyl-CoA acetyltransferase compare
Atu4685 -0.5 -3.1 LacI family transcriptional regulator compare
Atu1602 -0.5 -3.3 transcriptional activator, Crp family compare
Atu8047 -0.5 -2.7 hypothetical protein compare
Atu0566 -0.5 -1.0 hypothetical protein compare
Atu2052 -0.5 -1.7 hypothetical protein compare
Atu0953 -0.5 -0.8 hypothetical protein compare
Atu1550 -0.5 -2.0 polypeptide deformylase compare
Atu5540 -0.5 -1.0 hypothetical protein compare
Atu1845 -0.5 -1.7 phosphoribosylformylglycinamidine synthase I compare
Atu3518 -0.5 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1470 -0.5 -0.8 Camphor resistance protein compare
Atu2043 -0.5 -3.4 htrA family protein compare
Atu3623 -0.5 -2.4 DnaJ family molecular chaperone compare
Atu5101 -0.5 -2.8 hypothetical protein compare
Atu0486 -0.5 -2.8 dihydroorotate dehydrogenase compare
Atu1285 -0.5 -2.4 metal dependent hydrolase compare
Atu2267 -0.5 -2.3 hypothetical protein compare
Atu1565 -0.5 -1.7 serine acetyltransferase compare
Atu1380 -0.5 -3.9 zinc metallopeptidase compare
Atu2040 -0.5 -2.0 phosphoserine phosphatase compare
Atu4409 -0.5 -2.2 periplasmic nitrate reductase small subunit compare
Atu2710 -0.5 -1.3 hypothetical protein compare
Atu5163 -0.5 -2.1 type IV secretion protein AvhB2 compare
Atu0353 -0.5 -2.5 acetyltransferase compare
Atu4366 -0.5 -2.2 short chain dehydrogenase compare
Atu0678 -0.5 -1.7 histidyl-tRNA synthetase compare
Atu1629 -0.5 -1.0 transcriptional regulator, ArsR family compare
Atu3740 -0.5 -3.5 fructose bisphosphate aldolase compare
Atu1705 -0.5 -2.2 SEC-independent protein translocase protein compare
Atu2073 -0.5 -1.9 membrane protein compare
Atu3429 -0.5 -0.9 hypothetical protein compare
Atu8036 -0.5 -1.6 protein YBGT-like protein compare
Atu3032 -0.5 -1.7 hypothetical protein compare
Atu1577 -0.5 -1.7 ABC transporter, substrate binding protein (amino acid) compare
Atu3517 -0.5 -2.9 acetyltransferase compare
Atu5098 -0.5 -2.9 hypothetical protein compare
Atu5107 -0.5 -2.3 hypothetical protein compare
Atu4112 -0.5 -2.7 proline dipeptidase compare
Atu0029 -0.5 -2.3 S-adenosylhomocysteine hydrolase compare
Atu4410 -0.5 -2.3 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu4419 -0.4 -3.0 LysR family transcriptional regulator compare
Atu5100 -0.4 -4.0 DNA polymerase III, alpha chain compare
Atu5075 -0.4 -2.6 GntR family transcriptional regulator compare
Atu1141 -0.4 -2.0 Phosphoribosylglycinamide synthetase compare
Atu8025 -0.4 -0.9 hypothetical protein compare
Atu0946 -0.4 -2.5 dehydrogenase compare
Atu3481 -0.4 -2.4 enoyl-CoA hydratase compare
Atu4446 -0.4 -3.4 hypothetical protein compare
Atu4426 -0.4 -3.7 adenine deaminase compare
Atu0488 -0.4 -1.2 hypothetical protein compare
Atu0681 -0.4 -2.8 hypothetical protein compare
Atu0051 -0.4 -1.7 two component sensor kinase compare
Atu2176 -0.4 -1.7 hypothetical protein compare
Atu4342 -0.4 -1.6 hypothetical protein compare
Atu1339 -0.4 -1.1 ribonuclease E compare
Atu5094 -0.4 -2.9 ISL3 family transposase compare
Atu3799 -0.4 -2.9 GntR family transcriptional regulator compare
Atu0690 -0.4 -0.7 hypothetical protein compare
Atu3446 -0.4 -1.5 monooxygenase compare
Atu2722 -0.4 -1.8 porin compare
Atu4425 -0.4 -1.9 inosine-uridine preferring nucleoside hydrolase compare
Atu3757 -0.4 -1.8 hypothetical protein compare
Atu2104 -0.4 -2.1 hypothetical protein compare
Atu1229 -0.4 -1.1 hypothetical protein compare
Atu1405 -0.4 -1.4 transcriptional regulator, GntR family compare
Atu0692 -0.4 -2.6 glutathione-regulated potassium-efflux system protein compare
Atu3835 -0.4 -1.5 hypothetical protein compare
Atu5095 -0.4 -2.5 hypothetical protein compare
Atu3730 -0.4 -0.5 hypothetical protein compare
Atu1677 -0.4 -1.0 queuine tRNA-ribosyltransferase compare
Atu2640 -0.4 -1.0 hypothetical protein compare
Atu0477 -0.4 -1.0 hypothetical protein compare
Atu2128 -0.4 -3.2 acetolactate synthase large subunit compare
Atu5109 -0.4 -1.9 conjugal transfer protein compare
Atu1219 -0.4 -0.4 hypothetical protein compare
Atu3775 -0.4 -1.0 hypothetical protein compare
Atu5173 -0.4 -1.5 dehydrogenase compare
Atu3609 -0.4 -1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0205 -0.4 -3.1 methylmalonate-semialdehyde dehydrogenase compare
Atu3697 -0.4 -1.2 ATP-dependent protease LA 2 compare
Atu1301 -0.4 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od2.0 experiments

For benthi_leaf_lb with c58c1od2.0 coculture with C58C1OD2.0 across organisms