Experiment set22S204 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD0.075

200 most important genes:

  gene name fitness t score description  
Atu0876 -4.0 -2.7 superoxide dismutase compare
Atu0043 -2.5 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu2057 -2.5 -2.4 DNA helicase II compare
Atu0189 -2.3 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0999 -2.2 -5.7 magnesium transport protein compare
Atu4217 -2.0 -1.8 TetR family transcriptional regulator compare
Atu1163 -1.8 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4317 -1.8 -3.8 TetR family transcriptional regulator compare
Atu2554 -1.8 -2.8 lysyl-tRNA synthetase compare
Atu2439 -1.7 -1.4 hypothetical protein compare
Atu2040 -1.6 -5.2 phosphoserine phosphatase compare
Atu0031 -1.6 -1.5 PTS system, IIA component compare
Atu3763 -1.5 -1.0 hypothetical protein compare
Atu0039 -1.5 -1.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu3730 -1.4 -1.3 hypothetical protein compare
Atu0086 -1.3 -1.4 ribosome-binding factor A compare
Atu0422 -1.3 -2.4 ABC transporter, membrane spanning protein compare
Atu4290 -1.3 -1.4 hypothetical protein compare
Atu0977 -1.3 -3.4 serine protease DO-like protease compare
Atu0777 -1.2 -1.0 hypothetical protein compare
Atu3009 -1.2 -1.3 exopolysaccharide production protein compare
Atu0188 -1.2 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0784 -1.2 -3.7 hypothetical protein compare
Atu2615 -1.2 -2.2 hypothetical protein compare
Atu0190 -1.2 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1874 -1.1 -2.3 RecA protein compare
Atu1619 -1.1 -3.6 protein-export membrane protein SECG compare
Atu1774 -1.1 -3.8 ABC transporter, substrate binding protein (peptide) compare
Atu2662 -1.1 -1.8 acetyltransferase compare
Atu0051 -1.1 -4.0 two component sensor kinase compare
Atu0142 -1.1 -3.8 cytochrome o ubiquinol oxidase subunit II compare
Atu0895 -1.1 -1.6 ABC transporter, substrate binding protein compare
Atu2217 -1.1 -3.4 hypothetical protein compare
Atu2184 -1.0 -5.4 transcriptional regulator, AsnC family compare
Atu0041 -1.0 -1.0 glutamine amidotransferase compare
Atu1357 -1.0 -7.5 hypothetical protein compare
Atu0141 -1.0 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2578 -1.0 -2.9 cAMP-dependent protein kinase regulatory subunit compare
Atu0030 -1.0 -1.7 phosphocarrier protein HPr compare
Atu0071 -1.0 -6.4 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu0025 -1.0 -2.2 hypothetical protein compare
Atu2824 -1.0 -2.6 hypothetical protein compare
Atu1356 -1.0 -5.9 hypothetical protein compare
Atu0070 -1.0 -6.1 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu0925 -0.9 -1.9 hypothetical protein compare
Atu1566 -0.9 -1.6 hypothetical protein compare
Atu0533 -0.9 -2.0 putative inhibitor of septum formation compare
Atu1793 -0.9 -5.1 phosphatidylcholine synthase compare
Atu0419 -0.9 -2.2 two component sensor kinase compare
Atu1739 -0.9 -2.2 permease compare
Atu1513 -0.9 -3.7 ABC excinuclease subunit A compare
Atu3518 -0.8 -5.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0413 -0.8 -1.7 stress induced protein compare
Atu2710 -0.8 -1.9 hypothetical protein compare
Atu0499 -0.8 -4.3 hypothetical protein compare
Atu0723 -0.8 -0.5 FAD dependent oxidoreductase compare
Atu3469 -0.8 -2.2 phosphoglyceromutase compare
Atu4072 -0.8 -1.1 nodulation protein N compare
Atu3706 -0.8 -3.7 D-3-phosphoglycerate dehydrogenase compare
Atu2640 -0.8 -1.8 hypothetical protein compare
Atu4616 -0.8 -1.0 dTDP-4-dehydrorhamnose reductase compare
Atu2684 -0.8 -1.4 hypothetical protein compare
Atu3910 -0.8 -3.2 LamB/YcsF family protein compare
Atu8167 -0.8 -5.5 putative transmembrane protein compare
Atu2722 -0.8 -4.6 porin compare
Atu0331 -0.8 -2.1 sigma-54 modulation protein compare
Atu4711 -0.8 -3.6 two component sensor kinase compare
Atu3739 -0.7 -2.5 phosphoglycerate kinase compare
Atu0894 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu0434 -0.7 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0399 -0.7 -3.4 dihydroorotase compare
Atu0690 -0.7 -1.8 hypothetical protein compare
Atu4502 -0.7 -4.2 cobalamin synthesis protein compare
Atu1845 -0.7 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu1850 -0.7 -3.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2043 -0.7 -4.4 htrA family protein compare
Atu8025 -0.7 -1.1 hypothetical protein compare
Atu1219 -0.7 -1.0 hypothetical protein compare
Atu2555 -0.7 -1.5 L-lysine 2,3-aminomutase compare
Atu0537 -0.7 -2.4 histidinol dehydrogenase compare
Atu0280 -0.7 -1.4 hypothetical protein compare
Atu1577 -0.7 -3.2 ABC transporter, substrate binding protein (amino acid) compare
Atu1714 -0.7 -1.1 exonuclease III compare
Atu4618 -0.7 -4.8 dTDP-rhamnose-3,5-epimerase compare
Atu1810 -0.7 -0.4 hypothetical protein compare
Atu0184 -0.7 -2.7 glucokinase compare
Atu2532 -0.7 -3.0 transcriptional regulator, MarR family compare
Atu2728 -0.6 -0.9 beta (1-->2) glucan export ATP-binding protein compare
Atu2442 -0.6 -1.3 hypothetical protein compare
Atu1754 -0.6 -1.4 hypothetical protein compare
Atu0971 -0.6 -0.8 two component sensor kinase compare
Atu1099 -0.6 -2.7 hypothetical protein compare
Atu5540 -0.6 -1.1 hypothetical protein compare
Atu1021 -0.6 -2.0 outer membrane protein compare
Atu0893 -0.6 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0230 -0.6 -1.6 hypothetical protein compare
Atu1028 -0.6 -1.5 hypothetical protein compare
Atu2052 -0.6 -1.8 hypothetical protein compare
Atu8096 -0.6 -1.3 hypothetical protein compare
Atu5125 -0.6 -1.9 GntR family transcriptional regulator compare
Atu0486 -0.6 -2.8 dihydroorotate dehydrogenase compare
Atu3780 -0.6 -2.2 hypothetical protein compare
Atu1339 -0.6 -1.4 ribonuclease E compare
Atu3707 -0.6 -0.8 phosphoserine aminotransferase compare
Atu4166 -0.6 -1.7 UDP-glucose 4-epimerase compare
Atu2304 -0.6 -4.7 bacteroid development protein compare
Atu2746 -0.6 -2.0 hypothetical protein compare
Atu3886 -0.6 -3.4 lysophospholipase compare
Atu6098 -0.6 -0.8 transcriptional regulator, HTH family compare
Atu3697 -0.6 -2.0 ATP-dependent protease LA 2 compare
Atu2192 -0.6 -1.0 hypothetical protein compare
Atu2692 -0.6 -2.0 intracellular septation protein compare
Atu1447 -0.6 -0.6 two component sensor kinase compare
Atu1439 -0.6 -1.1 hypothetical protein compare
Atu2083 -0.6 -1.1 DNA repair protein RecN compare
Atu0703 -0.6 -1.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1602 -0.6 -2.7 transcriptional activator, Crp family compare
Atu2682 -0.6 -1.9 hypothetical protein compare
Atu0972 -0.5 -1.1 lipA protein compare
Atu4053 -0.5 -0.6 succinoglycan biosynthesis protein compare
Atu1683 -0.5 -0.9 hypothetical protein compare
Atu4792 -0.5 -1.5 hypothetical protein compare
Atu1470 -0.5 -0.8 Camphor resistance protein compare
Atu3775 -0.5 -2.0 hypothetical protein compare
Atu0926 -0.5 -2.1 hypothetical protein compare
Atu1056 -0.5 -2.3 hypothetical protein compare
Atu0535 -0.5 -1.8 hypothetical protein compare
Atu1300 -0.5 -3.5 MFS permease compare
Atu1285 -0.5 -2.8 metal dependent hydrolase compare
Atu2650 -0.5 -3.3 glycerol-3-phosphate dehydrogenase compare
Atu1308 -0.5 -2.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3740 -0.5 -3.3 fructose bisphosphate aldolase compare
Atu2396 -0.5 -2.5 urease accessory protein compare
Atu2294 -0.5 -2.1 aminoglycoside N6'-acetyltransferase compare
Atu0050 -0.5 -2.0 two component response regulator compare
Atu3519 -0.5 -2.5 peptidyl-prolyl cis-trans isomerase compare
Atu1803 -0.5 -1.7 cold shock protein compare
Atu0479 -0.5 -2.6 ABC transporter, substrate binding protein (amino acid) compare
Atu0746 -0.5 -1.3 hypothetical protein compare
Atu0923 -0.5 -2.3 hypothetical protein compare
Atu2537 -0.5 -2.5 transcriptional regulator, TetR family compare
Atu0931 -0.5 -3.3 penicillin binding protein compare
Atu1327 -0.5 -2.3 NADH-ubiquinone oxidoreductase compare
Atu0696 -0.5 -2.1 phosphatase compare
Atu4832 -0.5 -3.0 hypothetical protein compare
Atu1469 -0.5 -1.6 hypothetical protein compare
Atu8117 -0.5 -1.7 hypothetical protein compare
Atu3628 -0.5 -1.9 hypothetical protein compare
Atu0692 -0.5 -3.9 glutathione-regulated potassium-efflux system protein compare
Atu1464 -0.5 -2.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu2036 -0.5 -0.9 acetolactate synthase III, large subunit compare
Atu8035 -0.5 -1.2 hypothetical protein compare
Atu5430 -0.5 -0.9 hypothetical protein compare
Atu0678 -0.5 -1.6 histidyl-tRNA synthetase compare
Atu2073 -0.5 -2.2 membrane protein compare
Atu5450 -0.5 -2.2 hypothetical protein compare
Atu0135 -0.5 -2.1 uracil phosphoribosyltransferase compare
Atu3429 -0.5 -0.8 hypothetical protein compare
Atu2616 -0.5 -0.9 hypothetical protein compare
Atu4223 -0.5 -1.2 sarcosine oxidase delta subunit compare
Atu0401 -0.5 -2.9 fructokinase compare
Atu2115 -0.5 -3.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4724 -0.4 -0.8 hypothetical protein compare
Atu6165 -0.4 -1.0 hypothetical protein compare
Atu3345 -0.4 -1.9 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu3727 -0.4 -1.7 hypothetical protein compare
Atu4148 -0.4 -2.4 UDP-glucuronic acid epimerase compare
Atu3911 -0.4 -1.6 hypothetical protein compare
Atu0185 -0.4 -2.1 methylglyoxal synthase compare
Atu5470 -0.4 -1.1 hypothetical protein compare
Atu0353 -0.4 -3.0 acetyltransferase compare
Atu1780 -0.4 -2.9 ATP-dependent DNA helicase compare
Atu3423 -0.4 -1.3 hypothetical protein compare
Atu0689 -0.4 -3.3 ribosomal large subunit pseudouridine synthase B compare
Atu1904 -0.4 -1.4 transcriptional regulator compare
Atu3144 -0.4 -2.0 GntR family transcriptional regulator compare
Atu0035 -0.4 -3.1 phosphoenolpyruvate carboxykinase compare
Atu1844 -0.4 -1.0 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -0.4 -2.5 phosphoribosylamine--glycine ligase compare
Atu2317 -0.4 -2.0 hypothetical protein compare
Atu3045 -0.4 -1.6 hypothetical protein compare
Atu4099 -0.4 -2.8 hypothetical protein compare
Atu0641 -0.4 -1.7 hypothetical protein compare
Atu3759 -0.4 -0.8 hypothetical protein compare
Atu1129 -0.4 -2.4 excinuclease ABC chain C compare
Atu2772 -0.4 -2.1 Invasion protein A compare
Atu1301 -0.4 -1.8 hypothetical protein compare
Atu2200 -0.4 -1.4 cold shock protein compare
Atu8019 -0.4 -1.4 hypothetical protein compare
Atu1916 -0.4 -1.6 hypothetical protein compare
Atu2286 -0.4 -0.7 hypothetical protein compare
Atu1184 -0.4 -1.0 hypothetical protein compare
Atu3183 -0.4 -0.5 hypothetical protein compare
Atu3486 -0.4 -0.8 DeoR family transcriptional regulator compare
Atu3847 -0.4 -3.0 hypothetical protein compare
Atu0298 -0.4 -2.3 orotidine 5 compare
Atu0480 -0.4 -2.9 polysaccharide biosynthesis protein compare
Atu3468 -0.4 -0.4 hypothetical protein compare
Atu2797 -0.4 -1.5 cobalamin biosynthesis protein compare
Atu4896 -0.4 -1.0 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od0.075 experiments

For benthi_leaf_lb with c58c1od0.075 coculture with C58C1OD0.075 across organisms