Experiment set22S202 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD0.075

200 most important genes:

  gene name fitness t score description  
Atu4317 -3.1 -5.0 TetR family transcriptional regulator compare
Atu2439 -2.8 -1.6 hypothetical protein compare
Atu0086 -1.9 -1.5 ribosome-binding factor A compare
Atu0999 -1.9 -5.4 magnesium transport protein compare
Atu2684 -1.7 -1.8 hypothetical protein compare
Atu0189 -1.7 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0769 -1.6 -2.0 protoheme IX farnesyltransferase compare
Atu0040 -1.6 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3763 -1.6 -1.1 hypothetical protein compare
Atu0043 -1.6 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu1030 -1.4 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2615 -1.4 -2.4 hypothetical protein compare
Atu4217 -1.3 -1.7 TetR family transcriptional regulator compare
Atu0977 -1.3 -3.2 serine protease DO-like protease compare
Atu1359 -1.3 -1.4 dnaK deletion suppressor protein compare
Atu1356 -1.3 -7.0 hypothetical protein compare
Atu2692 -1.2 -3.1 intracellular septation protein compare
Atu1163 -1.2 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1619 -1.2 -2.8 protein-export membrane protein SECG compare
Atu0533 -1.2 -3.2 putative inhibitor of septum formation compare
Atu2036 -1.1 -1.8 acetolactate synthase III, large subunit compare
Atu2616 -1.1 -1.7 hypothetical protein compare
Atu2728 -1.1 -1.2 beta (1-->2) glucan export ATP-binding protein compare
Atu1446 -1.0 -2.0 two component response regulator compare
Atu2083 -1.0 -3.3 DNA repair protein RecN compare
Atu0399 -1.0 -5.2 dihydroorotase compare
Atu0190 -1.0 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0142 -1.0 -3.5 cytochrome o ubiquinol oxidase subunit II compare
Atu2040 -1.0 -3.9 phosphoserine phosphatase compare
Atu0679 -1.0 -2.6 ATP phosphoribosyltransferase compare
Atu6098 -1.0 -1.2 transcriptional regulator, HTH family compare
Atu0070 -1.0 -4.8 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1739 -0.9 -2.7 permease compare
Atu0051 -0.9 -3.8 two component sensor kinase compare
Atu1357 -0.9 -6.3 hypothetical protein compare
Atu0071 -0.9 -5.8 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu3469 -0.9 -2.0 phosphoglyceromutase compare
Atu1683 -0.9 -1.4 hypothetical protein compare
Atu1793 -0.9 -4.6 phosphatidylcholine synthase compare
Atu3706 -0.9 -4.1 D-3-phosphoglycerate dehydrogenase compare
Atu0690 -0.9 -1.6 hypothetical protein compare
Atu0784 -0.8 -3.8 hypothetical protein compare
Atu3727 -0.8 -2.7 hypothetical protein compare
Atu3598 -0.8 -2.0 thiol:disulfide interchange protein compare
Atu0925 -0.8 -2.4 hypothetical protein compare
Atu4711 -0.8 -3.8 two component sensor kinase compare
Atu4469 -0.8 -1.8 iron ABC transporter permease compare
Atu3712 -0.7 -1.5 hypothetical protein compare
Atu2043 -0.7 -4.1 htrA family protein compare
Atu2554 -0.7 -1.6 lysyl-tRNA synthetase compare
Atu2433 -0.7 -1.2 hypothetical protein compare
Atu3750 -0.7 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu2304 -0.7 -5.2 bacteroid development protein compare
Atu0030 -0.7 -1.3 phosphocarrier protein HPr compare
Atu0031 -0.7 -0.9 PTS system, IIA component compare
Atu1327 -0.7 -2.3 NADH-ubiquinone oxidoreductase compare
Atu1513 -0.7 -3.3 ABC excinuclease subunit A compare
Atu0331 -0.7 -2.1 sigma-54 modulation protein compare
Atu0141 -0.7 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu1774 -0.7 -2.8 ABC transporter, substrate binding protein (peptide) compare
Atu1232 -0.7 -2.1 hypothetical protein compare
Atu0895 -0.7 -1.1 ABC transporter, substrate binding protein compare
Atu3517 -0.7 -3.4 acetyltransferase compare
Atu2184 -0.7 -3.1 transcriptional regulator, AsnC family compare
Atu0039 -0.6 -0.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0751 -0.6 -3.4 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu3519 -0.6 -3.8 peptidyl-prolyl cis-trans isomerase compare
Atu2532 -0.6 -1.6 transcriptional regulator, MarR family compare
Atu4773 -0.6 -1.4 two component response regulator compare
Atu3780 -0.6 -3.1 hypothetical protein compare
Atu2633 -0.6 -1.4 RhtB family transporter compare
Atu0535 -0.6 -2.7 hypothetical protein compare
Atu0050 -0.6 -2.5 two component response regulator compare
Atu0353 -0.6 -3.6 acetyltransferase compare
Atu0940 -0.6 -1.5 PemK protein compare
Atu2052 -0.6 -1.9 hypothetical protein compare
Atu3707 -0.6 -0.9 phosphoserine aminotransferase compare
Atu0926 -0.6 -2.1 hypothetical protein compare
Atu2592 -0.6 -3.3 hypothetical protein compare
Atu0206 -0.6 -1.5 hypothetical protein compare
Atu6165 -0.6 -1.3 hypothetical protein compare
Atu4618 -0.6 -3.7 dTDP-rhamnose-3,5-epimerase compare
Atu0502 -0.6 -3.3 acetyl-CoA acetyltransferase compare
Atu8162 -0.6 -1.0 hypothetical protein compare
Atu1076 -0.6 -1.6 colicin V production protein compare
Atu2710 -0.6 -1.4 hypothetical protein compare
Atu3775 -0.6 -1.8 hypothetical protein compare
Atu1238 -0.6 -3.5 polysaccharide export protein compare
Atu3634 -0.6 -2.3 penicillin-binding protein dacf precursor compare
Atu4610 -0.6 -3.2 sugar nucleotide epimerase/dehydratase compare
Atu1535 -0.6 -0.8 cytochrome c oxidase, FixQ chain compare
Atu0499 -0.6 -3.3 hypothetical protein compare
Atu3518 -0.5 -2.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3423 -0.5 -0.9 hypothetical protein compare
Atu0893 -0.5 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1364 -0.5 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5486 -0.5 -2.6 hypothetical protein compare
Atu1466 -0.5 -1.2 hypothetical protein compare
Atu8167 -0.5 -3.9 putative transmembrane protein compare
Atu0354 -0.5 -1.0 ferric uptake regulator compare
Atu2682 -0.5 -2.1 hypothetical protein compare
Atu0692 -0.5 -4.0 glutathione-regulated potassium-efflux system protein compare
Atu2217 -0.5 -2.3 hypothetical protein compare
Atu1021 -0.5 -1.4 outer membrane protein compare
Atu3910 -0.5 -2.2 LamB/YcsF family protein compare
Atu0041 -0.5 -0.7 glutamine amidotransferase compare
Atu4148 -0.5 -2.3 UDP-glucuronic acid epimerase compare
Atu4205 -0.5 -3.7 TetR family transcriptional regulator compare
Atu2722 -0.5 -2.3 porin compare
Atu4840 -0.5 -2.1 hypothetical protein compare
Atu0971 -0.5 -0.7 two component sensor kinase compare
Atu3886 -0.5 -3.7 lysophospholipase compare
Atu1850 -0.5 -1.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2655 -0.5 -3.4 hypothetical protein compare
Atu0184 -0.5 -1.5 glucokinase compare
Atu0135 -0.5 -0.7 uracil phosphoribosyltransferase compare
Atu0924 -0.5 -1.6 hypothetical protein compare
Atu3008 -0.5 -0.6 hypothetical protein compare
Atu2462 -0.5 -1.4 hypothetical protein compare
Atu0480 -0.5 -3.8 polysaccharide biosynthesis protein compare
Atu1417 -0.5 -2.4 enoyl-CoA hydratase compare
Atu3740 -0.5 -3.8 fructose bisphosphate aldolase compare
Atu1285 -0.5 -2.3 metal dependent hydrolase compare
Atu0795 -0.5 -1.0 hypothetical protein compare
Atu2115 -0.5 -3.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu8010 -0.5 -1.4 hypothetical protein compare
Atu0836 -0.5 -1.6 Glutathione-S-transferase compare
Atu2660 -0.5 -1.2 hypothetical protein compare
Atu3759 -0.5 -1.0 hypothetical protein compare
Atu0931 -0.5 -3.3 penicillin binding protein compare
Atu1577 -0.5 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu1463 -0.5 -2.3 glycine cleavage system component H compare
Atu3032 -0.5 -2.3 hypothetical protein compare
Atu3467 -0.5 -1.4 hypothetical protein compare
Atu8099 -0.5 -1.7 hypothetical protein compare
Atu1602 -0.5 -2.5 transcriptional activator, Crp family compare
Atu3415 -0.5 -3.2 ABC transporter substrate binding protein compare
Atu5173 -0.5 -1.9 dehydrogenase compare
Atu1182 -0.5 -1.0 hypothetical protein compare
Atu0225 -0.5 -0.6 hypothetical protein compare
Atu2832 -0.5 -1.4 tRNA modification GTPase compare
Atu3413 -0.5 -1.8 AsnC family transcriptional regulator compare
Atu2650 -0.5 -3.4 glycerol-3-phosphate dehydrogenase compare
Atu0861 -0.5 -1.7 hypothetical protein compare
Atu4823 -0.5 -3.0 acetyl-CoA acetyltransferase compare
Atu0488 -0.5 -1.6 hypothetical protein compare
Atu0689 -0.5 -3.0 ribosomal large subunit pseudouridine synthase B compare
Atu6131 -0.4 -1.9 TraR Antiactivator compare
Atu2801 -0.4 -2.0 precorrin-2 C20 methyltransferase compare
Atu0601 -0.4 -2.7 oxidoreductase compare
Atu1803 -0.4 -2.2 cold shock protein compare
Atu3739 -0.4 -1.6 phosphoglycerate kinase compare
Atu3609 -0.4 -1.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0479 -0.4 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu2317 -0.4 -1.5 hypothetical protein compare
Atu0106 -0.4 -2.2 cold shock protein compare
Atu2001 -0.4 -2.7 excinuclease ABC subunit B compare
Atu0251 -0.4 -3.3 hypothetical protein compare
Atu0572 -0.4 -2.1 hypothetical protein compare
Atu2795 -0.4 -2.5 cobalamin biosynthetic protein compare
Atu2515 -0.4 -2.5 ABC transporter, nucleotide binding/ATPase protein (dipeptide) compare
Atu2656 -0.4 -2.6 hypothetical protein compare
Atu0812 -0.4 -1.1 hypothetical protein compare
Atu4502 -0.4 -2.8 cobalamin synthesis protein compare
Atu2824 -0.4 -1.1 hypothetical protein compare
Atu0035 -0.4 -3.3 phosphoenolpyruvate carboxykinase compare
Atu1339 -0.4 -1.7 ribonuclease E compare
Atu0894 -0.4 -0.7 ABC transporter, membrane spanning protein compare
Atu2489 -0.4 -3.0 hypothetical protein compare
Atu2555 -0.4 -1.3 L-lysine 2,3-aminomutase compare
Atu8117 -0.4 -1.0 hypothetical protein compare
Atu1741 -0.4 -1.7 hypothetical protein compare
Atu4838 -0.4 -1.9 outer membrane lipoprotein compare
Atu4026 -0.4 -2.4 hypothetical protein compare
Atu1863 -0.4 -1.6 permease compare
Atu0415 -0.4 -2.7 hypothetical protein compare
Atu0995 -0.4 -2.7 hypothetical protein compare
Atu1607 -0.4 -1.2 DNA repair protein compare
Atu8195 -0.4 -1.3 hypothetical protein compare
Atu3468 -0.4 -0.4 hypothetical protein compare
Atu4724 -0.4 -1.1 hypothetical protein compare
Atu2437 -0.4 -1.8 hypothetical protein compare
Atu4812 -0.4 -2.5 hypothetical protein compare
Atu1921 -0.4 -1.4 hypothetical protein compare
Atu3604 -0.4 -1.9 hypoxanthine phosphoribosyltransferase compare
Atu0317 -0.4 -2.4 hypothetical protein compare
Atu1845 -0.4 -1.2 phosphoribosylformylglycinamidine synthase I compare
Atu3539 -0.4 -1.3 hypothetical protein compare
Atu1777 -0.4 -2.1 hypothetical protein compare
Atu3848 -0.4 -2.6 hypothetical protein compare
Atu0303 -0.4 -1.5 hypothetical protein compare
Atu2582 -0.4 -2.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0095 -0.4 -2.1 hypothetical protein compare
Atu3392 -0.4 -1.3 methyltransferase compare
Atu0038 -0.4 -1.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2057 -0.4 -0.8 DNA helicase II compare
Atu0029 -0.4 -1.5 S-adenosylhomocysteine hydrolase compare
Atu2517 -0.4 -2.8 ABC transporter, membrane spanning protein (dipeptide) compare
Atu1129 -0.4 -2.6 excinuclease ABC chain C compare
Atu4832 -0.4 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od0.075 experiments

For benthi_leaf_lb with c58c1od0.075 coculture with C58C1OD0.075 across organisms