Experiment set22S201 for Agrobacterium fabrum C58

Compare to:

Benthi_leaf_LB with C58C1OD0.075

200 most important genes:

  gene name fitness t score description  
Atu0189 -5.1 -3.5 ABC transporter, membrane spanning protein (peptide) compare
Atu0141 -3.9 -2.7 cytochrome O ubiquinol oxidase subunit I compare
Atu4317 -3.1 -3.9 TetR family transcriptional regulator compare
Atu0769 -2.4 -2.2 protoheme IX farnesyltransferase compare
Atu0999 -2.1 -5.3 magnesium transport protein compare
Atu0354 -1.9 -2.8 ferric uptake regulator compare
Atu0043 -1.9 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu0533 -1.8 -3.1 putative inhibitor of septum formation compare
Atu3469 -1.7 -3.5 phosphoglyceromutase compare
Atu0977 -1.7 -3.8 serine protease DO-like protease compare
Atu0040 -1.6 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3763 -1.6 -1.1 hypothetical protein compare
Atu0190 -1.6 -4.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1354 -1.4 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0894 -1.4 -1.7 ABC transporter, membrane spanning protein compare
Atu4072 -1.4 -1.6 nodulation protein N compare
Atu8087 -1.3 -1.4 putative peptidoglycan binding protein compare
Atu1356 -1.3 -6.0 hypothetical protein compare
Atu0030 -1.3 -2.0 phosphocarrier protein HPr compare
Atu2439 -1.3 -1.2 hypothetical protein compare
Atu0050 -1.2 -4.4 two component response regulator compare
Atu1163 -1.2 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1683 -1.2 -2.1 hypothetical protein compare
Atu4217 -1.2 -1.4 TetR family transcriptional regulator compare
Atu2615 -1.2 -2.2 hypothetical protein compare
Atu2040 -1.2 -3.9 phosphoserine phosphatase compare
Atu1793 -1.1 -5.8 phosphatidylcholine synthase compare
Atu3730 -1.1 -1.2 hypothetical protein compare
Atu2036 -1.1 -1.7 acetolactate synthase III, large subunit compare
Atu0269 -1.1 -3.4 exodeoxyribonuclease VII large subunit compare
Atu3008 -1.1 -1.0 hypothetical protein compare
Atu2057 -1.1 -1.9 DNA helicase II compare
Atu2555 -1.0 -2.9 L-lysine 2,3-aminomutase compare
Atu0679 -1.0 -3.3 ATP phosphoribosyltransferase compare
Atu1446 -1.0 -2.1 two component response regulator compare
Atu0188 -1.0 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu3663 -1.0 -1.0 hypothetical protein compare
Atu0925 -1.0 -3.4 hypothetical protein compare
Atu2692 -1.0 -3.2 intracellular septation protein compare
Atu1619 -1.0 -3.2 protein-export membrane protein SECG compare
Atu2682 -0.9 -4.7 hypothetical protein compare
Atu2710 -0.9 -2.1 hypothetical protein compare
Atu0142 -0.9 -2.5 cytochrome o ubiquinol oxidase subunit II compare
Atu6098 -0.9 -1.1 transcriptional regulator, HTH family compare
Atu3740 -0.9 -6.2 fructose bisphosphate aldolase compare
Atu1364 -0.9 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3706 -0.9 -4.1 D-3-phosphoglycerate dehydrogenase compare
Atu2043 -0.9 -5.3 htrA family protein compare
Atu0723 -0.9 -0.6 FAD dependent oxidoreductase compare
Atu2616 -0.9 -1.6 hypothetical protein compare
Atu1464 -0.9 -3.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu3698 -0.9 -2.1 thioredoxin compare
Atu0499 -0.8 -4.1 hypothetical protein compare
Atu1463 -0.8 -3.6 glycine cleavage system component H compare
Atu5540 -0.8 -1.4 hypothetical protein compare
Atu0751 -0.8 -2.6 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu4897 -0.8 -1.4 hypothetical protein compare
Atu2184 -0.8 -3.3 transcriptional regulator, AsnC family compare
Atu3739 -0.8 -2.6 phosphoglycerate kinase compare
Atu1344 -0.8 -1.8 hypothetical protein compare
Atu0399 -0.8 -3.2 dihydroorotase compare
Atu1774 -0.8 -3.1 ABC transporter, substrate binding protein (peptide) compare
Atu1357 -0.8 -5.4 hypothetical protein compare
Atu0086 -0.8 -0.5 ribosome-binding factor A compare
Atu0690 -0.8 -1.7 hypothetical protein compare
Atu2304 -0.7 -5.2 bacteroid development protein compare
Atu1739 -0.7 -2.4 permease compare
Atu0070 -0.7 -4.9 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu1810 -0.7 -0.5 hypothetical protein compare
Atu3518 -0.7 -4.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3001 -0.7 -1.4 hypothetical protein compare
Atu0422 -0.7 -1.5 ABC transporter, membrane spanning protein compare
Atu0017 -0.7 -0.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0071 -0.7 -4.1 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2052 -0.7 -2.1 hypothetical protein compare
Atu4711 -0.7 -3.2 two component sensor kinase compare
Atu0893 -0.7 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2217 -0.7 -2.5 hypothetical protein compare
Atu2640 -0.7 -1.6 hypothetical protein compare
Atu1028 -0.7 -1.6 hypothetical protein compare
Atu2055 -0.7 -2.9 HlyD family secretion protein compare
Atu8195 -0.7 -2.2 hypothetical protein compare
Atu1714 -0.7 -1.1 exonuclease III compare
Atu1327 -0.7 -2.7 NADH-ubiquinone oxidoreductase compare
Atu0339 -0.7 -2.7 hypothetical protein compare
Atu0025 -0.6 -1.8 hypothetical protein compare
Atu0971 -0.6 -0.9 two component sensor kinase compare
Atu2554 -0.6 -1.0 lysyl-tRNA synthetase compare
Atu0051 -0.6 -2.6 two component sensor kinase compare
Atu8167 -0.6 -4.7 putative transmembrane protein compare
Atu1513 -0.6 -2.8 ABC excinuclease subunit A compare
Atu5057 -0.6 -1.8 hypothetical protein compare
Atu4618 -0.6 -4.5 dTDP-rhamnose-3,5-epimerase compare
Atu0940 -0.6 -1.2 PemK protein compare
Atu2083 -0.6 -2.3 DNA repair protein RecN compare
Atu1308 -0.6 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3519 -0.6 -3.3 peptidyl-prolyl cis-trans isomerase compare
Atu8010 -0.6 -1.5 hypothetical protein compare
Atu1177 -0.6 -2.3 hypothetical protein compare
Atu0566 -0.6 -0.8 hypothetical protein compare
Atu4166 -0.6 -1.1 UDP-glucose 4-epimerase compare
Atu0184 -0.6 -2.4 glucokinase compare
Atu0419 -0.6 -1.7 two component sensor kinase compare
Atu1634 -0.6 -0.7 hypothetical protein compare
Atu5034 -0.6 -1.7 hypothetical protein compare
Atu0035 -0.6 -3.9 phosphoenolpyruvate carboxykinase compare
Atu3886 -0.6 -3.7 lysophospholipase compare
Atu3697 -0.6 -1.6 ATP-dependent protease LA 2 compare
Atu0479 -0.6 -2.7 ABC transporter, substrate binding protein (amino acid) compare
Atu0647 -0.5 -2.4 phosphoribosylamine--glycine ligase compare
Atu0681 -0.5 -2.4 hypothetical protein compare
Atu1339 -0.5 -1.8 ribonuclease E compare
Atu3467 -0.5 -1.4 hypothetical protein compare
Atu2207 -0.5 -1.7 two component sensor kinase compare
Atu3910 -0.5 -2.0 LamB/YcsF family protein compare
Atu1307 -0.5 -3.9 dihydroorotase compare
Atu4502 -0.5 -2.1 cobalamin synthesis protein compare
Atu1229 -0.5 -1.8 hypothetical protein compare
Atu1359 -0.5 -0.7 dnaK deletion suppressor protein compare
Atu1874 -0.5 -1.0 RecA protein compare
Atu0836 -0.5 -1.3 Glutathione-S-transferase compare
Atu0386 -0.5 -1.3 hypothetical protein compare
Atu3095 -0.5 -2.2 hypothetical protein compare
Atu3598 -0.5 -1.2 thiol:disulfide interchange protein compare
Atu3517 -0.5 -2.7 acetyltransferase compare
Atu0135 -0.5 -1.5 uracil phosphoribosyltransferase compare
Atu0876 -0.5 -0.8 superoxide dismutase compare
Atu0353 -0.5 -2.9 acetyltransferase compare
Atu8165 -0.5 -1.4 hypothetical protein compare
Atu2684 -0.5 -0.9 hypothetical protein compare
Atu0777 -0.5 -0.5 hypothetical protein compare
Atu3712 -0.5 -0.8 hypothetical protein compare
Atu2722 -0.5 -2.1 porin compare
Atu0041 -0.5 -0.5 glutamine amidotransferase compare
Atu2650 -0.5 -3.1 glycerol-3-phosphate dehydrogenase compare
Atu1285 -0.5 -2.4 metal dependent hydrolase compare
Atu5028 -0.5 -1.6 IS426 transposase compare
Atu2832 -0.5 -1.4 tRNA modification GTPase compare
Atu0947 -0.5 -2.8 transcriptional regulator, AsnC family compare
Atu3634 -0.5 -1.8 penicillin-binding protein dacf precursor compare
Atu3884 -0.5 -3.1 hypothetical protein compare
Atu0130 -0.5 -1.7 cytidine deaminase compare
Atu1238 -0.5 -2.7 polysaccharide export protein compare
Atu1850 -0.5 -1.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4825 -0.5 -2.4 dehydrogenase compare
Atu4187 -0.5 -0.8 tRNA-Met compare
Atu6165 -0.5 -1.1 hypothetical protein compare
Atu1760 -0.5 -0.6 hypothetical protein compare
Atu1021 -0.5 -1.1 outer membrane protein compare
Atu0572 -0.5 -2.0 hypothetical protein compare
Atu3144 -0.5 -1.9 GntR family transcriptional regulator compare
Atu2001 -0.5 -3.0 excinuclease ABC subunit B compare
Atu1098 -0.5 -0.9 hypothetical protein compare
Atu8159 -0.4 -1.5 hypothetical protein compare
Atu0486 -0.4 -2.5 dihydroorotate dehydrogenase compare
Atu4151 -0.4 -2.2 LysR family transcriptional regulator compare
Atu0535 -0.4 -1.5 hypothetical protein compare
Atu1323 -0.4 -1.6 hypothetical protein compare
Atu1844 -0.4 -1.2 Phosphoribosylformylglycinamidine synthetase compare
Atu3912 -0.4 -2.5 hypothetical protein compare
Atu4161 -0.4 -1.2 hypothetical protein compare
Atu0368 -0.4 -1.9 tRNA pseudouridine synthase I compare
Atu4831 -0.4 -2.3 hypothetical protein compare
Atu8162 -0.4 -0.8 hypothetical protein compare
Atu2333 -0.4 -1.8 ATP-dependent RNA helicase compare
Atu1099 -0.4 -2.4 hypothetical protein compare
Atu4854 -0.4 -2.0 hypothetical protein compare
Atu1606 -0.4 -1.6 methionine aminopeptidase compare
Atu1077 -0.4 -1.5 DNA repair protein compare
Atu2317 -0.4 -1.4 hypothetical protein compare
Atu3336 -0.4 -1.6 hypothetical protein compare
Atu3755 -0.4 -1.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu6045 -0.4 -1.1 replication protein C compare
Atu0124 -0.4 -1.9 hypothetical protein compare
Atu4245 -0.4 -2.1 polyamine ABC transporter permease compare
Atu1462 -0.4 -3.4 glycine cleavage system protein P2 compare
Atu0736 -0.4 -2.5 hemolysin compare
Atu0503 -0.4 -3.4 enoyl-CoA hydratase compare
Atu0029 -0.4 -2.1 S-adenosylhomocysteine hydrolase compare
Atu0298 -0.4 -2.3 orotidine 5 compare
Atu4205 -0.4 -2.1 TetR family transcriptional regulator compare
Atu6189 -0.4 -1.0 protein secretion chaperone compare
Atu1904 -0.4 -1.7 transcriptional regulator compare
Atu2077 -0.4 -1.3 DNA polymerase III, epsilon subunit compare
Atu0946 -0.4 -2.9 dehydrogenase compare
Atu4820 -0.4 -2.6 hypothetical protein compare
Atu3780 -0.4 -1.8 hypothetical protein compare
Atu2489 -0.4 -2.5 hypothetical protein compare
Atu1577 -0.4 -1.8 ABC transporter, substrate binding protein (amino acid) compare
Atu4540 -0.4 -1.2 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2450 -0.4 -1.6 hypothetical protein compare
Atu0931 -0.4 -2.9 penicillin binding protein compare
Atu0331 -0.4 -0.9 sigma-54 modulation protein compare
Atu8035 -0.4 -0.9 hypothetical protein compare
Atu4779 -0.4 -1.6 hypothetical protein compare
Atu2662 -0.4 -0.7 acetyltransferase compare
Atu4815 -0.4 -2.5 glycosyltransferase compare
Atu3759 -0.4 -0.8 hypothetical protein compare
Atu2192 -0.4 -0.7 hypothetical protein compare
Atu0152 -0.4 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in benthi_leaf_lb with c58c1od0.075 experiments

For benthi_leaf_lb with c58c1od0.075 coculture with C58C1OD0.075 across organisms