Experiment set22IT095 for Pseudomonas putida KT2440

Compare to:

Growth at 10C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.6 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.7 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0290 -5.7 -7.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -5.6 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.3 -17.7 Ketol-acid reductoisomerase compare
PP_1995 -5.2 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -5.2 -5.0 Acetylglutamate kinase compare
PP_2168 -5.2 -13.3 Transaldolase compare
PP_3511 -5.2 -10.5 Branched-chain-amino-acid aminotransferase compare
PP_5097 -5.2 -15.6 homoserine O-acetyltransferase compare
PP_0966 -5.0 -11.5 Histidinol dehydrogenase compare
PP_1988 -5.0 -11.2 3-isopropylmalate dehydrogenase compare
PP_4909 -5.0 -4.9 phosphoserine phosphatase compare
PP_0184 -5.0 -7.6 Argininosuccinate lyase compare
PP_2001 -4.9 -12.0 O-succinylhomoserine sulfhydrylase compare
PP_0082 -4.9 -7.5 tryptophan synthase alpha chain compare
PP_5014 -4.9 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -4.9 -6.7 tryptophan synthase beta chain compare
PP_4680 -4.7 -16.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.7 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_4890 -4.6 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -4.6 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_5098 -4.6 -9.7 methionine biosynthesis protein MetW compare
PP_0422 -4.5 -6.6 Indole-3-glycerol phosphate synthase compare
PP_0758 -4.5 -7.4 conserved protein of unknown function compare
PP_5015 -4.5 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1088 -4.4 -13.4 Argininosuccinate synthase compare
PP_1898 -4.2 -6.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0967 -4.1 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -4.1 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.0 -8.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0965 -3.9 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -3.8 -7.3 Anthranilate phosphoribosyltransferase compare
PP_4696 -3.5 -6.6 Nitrogen regulation protein NR(I) compare
PP_5185 -3.4 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5155 -3.4 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -3.3 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4880 -3.0 -8.6 exoribonuclease R compare
PP_4785 -3.0 -6.6 conserved exported protein of unknown function compare
PP_0420 -2.9 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5128 -2.9 -6.0 Dihydroxy-acid dehydratase compare
PP_1025 -2.9 -8.5 2-isopropylmalate synthase compare
PP_2402 -2.8 -3.7 putative Sensor histidine kinase compare
PP_4994 -2.8 -4.3 conserved protein of unknown function compare
PP_2328 -2.8 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_2378 -2.7 -3.6 Fe/S biogenesis protein NfuA compare
PP_5303 -2.7 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4517 -2.6 -2.0 conserved protein of unknown function compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_2370 -2.6 -3.4 conserved protein of unknown function compare
PP_0417 -2.6 -13.5 Anthranilate synthase component 1 compare
PP_5346 -2.5 -9.2 pyruvate carboxylase subunit B compare
PP_4532 -2.5 -2.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_4964 -2.5 -4.6 D-erythrose 4-phosphate dehydrogenase compare
PP_2388 -2.4 -3.6 Transporter, LysE family compare
PP_0291 -2.4 -2.4 conserved protein of unknown function compare
PP_4902 -2.2 -3.3 Oligoribonuclease compare
PP_3417 -2.2 -5.7 D-gluconate transporter compare
PP_4699 -2.1 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5347 -2.1 -8.0 pyruvate carboxylase subunit A compare
PP_0406 -2.1 -3.8 Nucleotidyltransferase family protein compare
PP_5350 -2.0 -4.5 Transcriptional regulator, RpiR family compare
PP_0846 -2.0 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1734 -2.0 -4.9 Probable septum site-determining protein MinC compare
PP_4058 -2.0 -8.9 1,4-alpha-glucan branching enzyme compare
PP_5075 -2.0 -9.6 glutamate synthase (NADPH) beta subunit compare
PP_5400 -1.8 -6.7 conserved protein of unknown function compare
PP_4693 -1.8 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1994 -1.7 -2.9 tRNA pseudouridine (38-40)synthase compare
PP_2390 -1.7 -5.4 Transcriptional regulator, LysR family compare
PP_1022 -1.7 -4.7 glucose 6-phosphate-1-dehydrogenase compare
PP_2307 -1.7 -3.6 conserved protein of unknown function compare
PP_5076 -1.7 -11.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_2327 -1.6 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0393 -1.6 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5090 -1.6 -1.5 putative cell division protein compare
PP_0914 -1.6 -5.7 GGDEF domain protein compare
PP_4045 -1.6 -1.7 conserved protein of unknown function compare
PP_1733 -1.6 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1912 -1.6 -3.9 Phosphate acyltransferase compare
PP_3376 -1.5 -3.4 putative phosphonate dehydrogenase compare
PP_0787 -1.5 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0833 -1.5 -1.4 queuine tRNA-ribosyltransferase compare
PP_1783 -1.5 -2.1 dTDP-glucose pyrophosphorylase compare
PP_1231 -1.5 -3.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1655 -1.5 -3.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3821 -1.5 -6.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4099 -1.5 -13.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1656 -1.4 -6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1650 -1.4 -13.3 Sensor protein GacS compare
PP_5217 -1.4 -7.1 Polyphosphate kinase compare
PP_3484 -1.4 -4.9 Response regulator receiver protein compare
PP_4561 -1.4 -1.3 stress response protein compare
PP_4895 -1.3 -2.0 tRNA dimethylallyltransferase compare
PP_0775 -1.3 -2.1 conserved protein of unknown function compare
PP_5348 -1.3 -4.9 Transcriptional regulator, LysR family compare
PP_4942 -1.3 -2.1 conserved protein of unknown function compare
PP_2903 -1.3 -3.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5203 -1.3 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_5706 -1.3 -2.4 Sec translocation complex - SecG subunit compare
PP_t49 -1.3 -3.5 tRNA-Met compare
PP_0362 -1.2 -6.9 Biotin synthase compare
PP_1906 -1.2 -3.3 ribosomal large subunit pseudouridine synthase C compare
PP_0366 -1.2 -5.1 dethiobiotin synthetase compare
PP_0164 -1.2 -3.7 conserved protein of unknown function compare
PP_0872 -1.2 -5.1 Peptide chain release factor 3 compare
PP_0962 -1.2 -2.0 toluene-tolerance protein compare
PP_4697 -1.2 -1.6 poly(A) polymerase compare
PP_5514 -1.2 -1.3 conserved protein of unknown function compare
PP_4098 -1.2 -1.8 UvrABC system protein C compare
PP_1589 -1.1 -5.0 uridylyltransferase compare
PP_0855 -1.1 -2.1 conserved protein of unknown function compare
PP_5104 -1.1 -5.4 thiazole synthase compare
PP_1011 -1.1 -4.3 glucokinase compare
PP_4804 -1.1 -1.9 RlpA-like lipoprotein compare
PP_1764 -1.1 -2.6 Phosphoglycolate phosphatase 2 compare
PP_2163 -1.1 -4.2 VacJ lipoprotein compare
PP_3893 -1.1 -2.7 putative Phage DNA helicase compare
PP_1304 -1.1 -5.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1824 -1.1 -1.7 Smr domain protein compare
PP_0377 -1.1 -2.1 coenzyme PQQ synthesis protein D compare
PP_3365 -1.0 -1.3 Acetolactate synthase compare
PP_4766 -1.0 -4.2 ATP-dependent RNA helicase compare
PP_3695 -1.0 -4.7 conserved protein of unknown function compare
PP_1770 -1.0 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3105 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_1719 -1.0 -5.2 Tail-specific protease prc compare
PP_0958 -1.0 -3.5 phospholipid ABC transporter ATP-binding subunit compare
PP_1099 -1.0 -1.5 Cold shock protein CapB compare
PP_5058 -1.0 -4.3 Carboxy-terminal-processing protease compare
PP_0961 -1.0 -4.8 toluene tolerance protein compare
PP_1493 -1.0 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2145 -1.0 -2.1 beta-N-acetylglucosaminidase compare
PP_0364 -1.0 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_0339 -1.0 -0.7 Pyruvate dehydrogenase E1 component compare
PP_1362 -1.0 -2.0 pyruvate kinase II compare
PP_2253 -1.0 -1.2 Transcriptional regulator, GntR family compare
PP_5639 -1.0 -3.7 conserved exported protein of unknown function compare
PP_5216 -1.0 -1.2 exopolyphosphatase compare
PP_3094 -0.9 -2.9 conserved exported protein of unknown function compare
PP_0365 -0.9 -4.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2118 -0.9 -2.9 conserved protein of unknown function compare
PP_0001 -0.9 -1.5 probable chromosome-partitioning protein compare
PP_4074 -0.9 -4.0 conserved protein of unknown function compare
PP_4984 -0.9 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5007 -0.9 -2.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4199 -0.9 -1.1 putative Lipoprotein compare
PP_2088 -0.9 -1.5 RNA polymerase sigma factor SigX compare
PP_2070 -0.9 -1.6 Transcriptional regulator, AraC family compare
PP_1428 -0.9 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_1328 -0.9 -2.2 Protein MraZ compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_1404 -0.9 -2.7 conserved protein of unknown function compare
PP_1233 -0.9 -2.3 sulfurtransferase compare
PP_2972 -0.9 -1.2 conserved protein of unknown function compare
PP_1872 -0.9 -4.6 glutamate-pyruvate aminotransferase compare
PP_1664 -0.9 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1079 -0.9 -4.1 Ornithine carbamoyltransferase compare
PP_5586 -0.9 -3.2 exported protein of unknown function compare
PP_4937 -0.9 -2.3 toluene tolerance protein compare
PP_1987 -0.9 -2.0 Methlytransferase, UbiE/COQ5 family compare
PP_0313 -0.9 -1.7 putative electron transfer flavoprotein beta subunit compare
PP_3603 -0.8 -4.3 Transcriptional regulator, GntR family compare
PP_4782 -0.8 -2.6 Phosphomethylpyrimidine kinase compare
PP_1055 -0.8 -0.9 Type II secretion pathway protein GspN compare
PP_1444 -0.8 -5.7 quinoprotein glucose dehydrogenase compare
PP_5571 -0.8 -1.3 conserved protein of unknown function compare
PP_0363 -0.8 -5.2 8-amino-7-oxononanoate synthase compare
PP_0084 -0.8 -2.9 HTH-type transcriptional regulator TrpI compare
PP_1979 -0.8 -1.6 putative Hydrolase compare
PP_5507 -0.8 -1.4 protein of unknown function compare
PP_4265 -0.8 -0.5 DNA-binding transcriptional dual regulator compare
PP_t12 -0.8 -0.9 tRNA-Thr compare
PP_3185 -0.8 -2.7 Pet18 protein compare
PP_4943 -0.8 -1.3 putative Glycosyl transferase compare
PP_0902 -0.8 -4.8 integral membrane sensor signal transduction histidine kinase compare
PP_4977 -0.8 -4.3 5,10-methylenetetrahydrofolate reductase compare
PP_2337 -0.8 -1.7 aconitate isomerase compare
PP_0901 -0.8 -3.4 DNA-binding response regulator compare
PP_4387 -0.8 -2.5 conserved exported protein of unknown function compare
PP_0735 -0.8 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_1553 -0.8 -0.9 conserved protein of unknown function compare
PP_4993 -0.8 -2.1 Glutathione synthetase compare
PP_4695 -0.8 -4.6 Sensory box histidine kinase compare
PP_1757 -0.8 -2.9 DNA-binding transcriptional dual regulator compare
PP_4126 -0.8 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_0677 -0.8 -2.5 putative Lipoprotein compare
PP_5267 -0.8 -1.8 putative cytochrome c5 compare
PP_4050 -0.8 -5.6 glycogen synthase compare
PP_0978 -0.8 -2.0 conserved protein of unknown function compare
PP_2976 -0.8 -1.4 putative transposase compare
PP_3662 -0.7 -3.8 conserved protein of unknown function compare
PP_3730 -0.7 -1.4 Transcriptional regulatory protein AruR compare
PP_2032 -0.7 -3.1 putative ATPase compare
PP_1111 -0.7 -3.0 putative Synthetase compare
PP_0405 -0.7 -3.9 conserved protein of unknown function compare
PP_0065 -0.7 -1.6 NAD-binding component of TrK potassium transporter compare
PP_0381 -0.7 -3.5 Coenzyme PQQ synthesis protein F compare


Specific Phenotypes

For 2 genes in this experiment

For temperature D-Glucose in Pseudomonas putida KT2440

For temperature D-Glucose across organisms