Experiment set22IT094 for Pseudomonas putida KT2440

Compare to:

Growth at 10C; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.1 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.5 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_0292 -5.1 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -5.1 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0422 -4.9 -6.8 Indole-3-glycerol phosphate synthase compare
PP_0083 -4.9 -5.8 tryptophan synthase beta chain compare
PP_0082 -4.9 -5.8 tryptophan synthase alpha chain compare
PP_2168 -4.9 -11.3 Transaldolase compare
PP_4678 -4.8 -15.4 Ketol-acid reductoisomerase compare
PP_5098 -4.7 -8.5 methionine biosynthesis protein MetW compare
PP_1985 -4.6 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_5097 -4.6 -14.2 homoserine O-acetyltransferase compare
PP_3511 -4.5 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_0184 -4.5 -6.9 Argininosuccinate lyase compare
PP_1988 -4.5 -9.8 3-isopropylmalate dehydrogenase compare
PP_5185 -4.5 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -4.5 -10.4 Argininosuccinate synthase compare
PP_5014 -4.4 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -4.4 -6.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -4.3 -5.1 Acetylglutamate kinase compare
PP_5128 -4.3 -8.0 Dihydroxy-acid dehydratase compare
PP_0290 -4.2 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0966 -4.2 -11.6 Histidinol dehydrogenase compare
PP_4994 -4.2 -6.5 conserved protein of unknown function compare
PP_1995 -4.2 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -4.1 -7.9 Anthranilate phosphoribosyltransferase compare
PP_4909 -4.1 -6.2 phosphoserine phosphatase compare
PP_0289 -4.1 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.0 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4680 -4.0 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -4.0 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1898 -4.0 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4679 -3.8 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -3.8 -5.2 Nitrogen regulation protein NR(I) compare
PP_2001 -3.8 -11.2 O-succinylhomoserine sulfhydrylase compare
PP_4902 -3.8 -2.6 Oligoribonuclease compare
PP_2402 -3.6 -2.5 putative Sensor histidine kinase compare
PP_0420 -3.6 -8.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -3.6 -12.5 2-isopropylmalate synthase compare
PP_4517 -3.5 -3.4 conserved protein of unknown function compare
PP_5015 -3.5 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2378 -3.3 -2.3 Fe/S biogenesis protein NfuA compare
PP_2414 -3.2 -3.7 conserved exported protein of unknown function compare
PP_3999 -3.1 -7.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4532 -3.1 -2.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2370 -2.8 -3.5 conserved protein of unknown function compare
PP_5303 -2.8 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0846 -2.8 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_5347 -2.7 -10.3 pyruvate carboxylase subunit A compare
PP_2328 -2.7 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_1233 -2.5 -4.8 sulfurtransferase compare
PP_4785 -2.5 -5.5 conserved exported protein of unknown function compare
PP_0417 -2.5 -12.5 Anthranilate synthase component 1 compare
PP_4880 -2.4 -7.3 exoribonuclease R compare
PP_4964 -2.4 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4890 -2.3 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0758 -2.3 -5.6 conserved protein of unknown function compare
PP_1198 -2.3 -4.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0962 -2.3 -3.2 toluene-tolerance protein compare
PP_0291 -2.2 -2.2 conserved protein of unknown function compare
PP_0164 -2.1 -5.0 conserved protein of unknown function compare
PP_2388 -2.1 -2.9 Transporter, LysE family compare
PP_3376 -2.1 -4.6 putative phosphonate dehydrogenase compare
PP_2327 -2.1 -5.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5095 -2.1 -1.4 pyrroline-5-carboxylate reductase compare
PP_4699 -2.1 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2390 -1.9 -5.7 Transcriptional regulator, LysR family compare
PP_1654 -1.9 -2.8 cysteine synthase B compare
PP_1362 -1.9 -3.7 pyruvate kinase II compare
PP_0022 -1.9 -1.5 hypothetical protein compare
PP_1493 -1.8 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0401 -1.8 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_5076 -1.8 -10.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_0406 -1.8 -2.5 Nucleotidyltransferase family protein compare
PP_3417 -1.8 -4.6 D-gluconate transporter compare
PP_4099 -1.8 -15.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0065 -1.8 -3.1 NAD-binding component of TrK potassium transporter compare
PP_5075 -1.8 -9.2 glutamate synthase (NADPH) beta subunit compare
PP_0246 -1.7 -2.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_1650 -1.7 -15.1 Sensor protein GacS compare
PP_5348 -1.7 -5.5 Transcriptional regulator, LysR family compare
PP_5217 -1.7 -8.0 Polyphosphate kinase compare
PP_5203 -1.6 -5.5 5-formyltetrahydrofolate cyclo-ligase compare
PP_1231 -1.6 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -1.6 -2.1 pantothenate synthetase compare
PP_4697 -1.5 -2.3 poly(A) polymerase compare
PP_2568 -1.5 -1.6 Ring-cleaving dioxygenase compare
PP_4136 -1.5 -1.0 Transcriptional regulator, LuxR family compare
PP_4296 -1.5 -2.1 conserved exported protein of unknown function compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4984 -1.5 -6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0393 -1.4 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_t49 -1.4 -2.9 tRNA-Met compare
PP_2878 -1.4 -2.0 conserved protein of unknown function compare
PP_5346 -1.4 -4.1 pyruvate carboxylase subunit B compare
PP_1656 -1.4 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0914 -1.4 -5.5 GGDEF domain protein compare
PP_2145 -1.4 -2.7 beta-N-acetylglucosaminidase compare
PP_4212 -1.4 -4.5 pyoverdine biosynthesis related protein compare
PP_1783 -1.4 -1.5 dTDP-glucose pyrophosphorylase compare
PP_4126 -1.3 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_1428 -1.3 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_1304 -1.3 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0547 -1.3 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3603 -1.3 -4.8 Transcriptional regulator, GntR family compare
PP_0363 -1.3 -5.8 8-amino-7-oxononanoate synthase compare
PP_0725 -1.3 -4.3 conserved hypothetical TPR repeat protein compare
PP_4766 -1.3 -3.7 ATP-dependent RNA helicase compare
PP_1022 -1.3 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_1237 -1.3 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3014 -1.2 -2.7 conserved exported protein of unknown function compare
PP_1655 -1.2 -3.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4782 -1.2 -3.6 Phosphomethylpyrimidine kinase compare
PP_0833 -1.2 -1.1 queuine tRNA-ribosyltransferase compare
PP_0261 -1.2 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1836 -1.2 -2.0 putative metal transporter, ZIP family compare
PP_5514 -1.2 -1.7 conserved protein of unknown function compare
PP_0980 -1.2 -4.7 Probable cytosol aminopeptidase compare
PP_3484 -1.2 -3.8 Response regulator receiver protein compare
PP_5267 -1.2 -1.7 putative cytochrome c5 compare
PP_4471 -1.1 -3.2 Magnesium transporter compare
PP_5639 -1.1 -5.1 conserved exported protein of unknown function compare
PP_5028 -1.1 -2.6 proline iminopeptidase compare
PP_4199 -1.1 -1.1 putative Lipoprotein compare
PP_1303 -1.1 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_4874 -1.1 -1.1 50S ribosomal protein L9 compare
PP_1011 -1.1 -5.1 glucokinase compare
PP_2389 -1.1 -3.4 conserved protein of unknown function compare
PP_2793 -1.1 -1.4 Acyl-CoA dehydrogenase family protein compare
PP_1589 -1.1 -5.3 uridylyltransferase compare
PP_3241 -1.1 -1.4 conserved exported protein of unknown function compare
PP_5706 -1.1 -1.5 Sec translocation complex - SecG subunit compare
PP_0127 -1.1 -2.3 Thiol:disulfide interchange protein compare
PP_1912 -1.1 -3.1 Phosphate acyltransferase compare
PP_3198 -1.1 -1.5 Ferredoxin, 2Fe-2S compare
PP_5400 -1.1 -5.1 conserved protein of unknown function compare
PP_3284 -1.0 -3.7 enoyl-CoA hydratase-isomerase compare
PP_2429 -1.0 -2.1 putative Membrane protein compare
PP_0959 -1.0 -1.4 phospholipid ABC transporter compare
PP_5227 -1.0 -4.6 diaminopimelate decarboxylase compare
PP_3102 -1.0 -2.7 conserved protein of unknown function compare
PP_5104 -1.0 -4.7 thiazole synthase compare
PP_4895 -1.0 -1.3 tRNA dimethylallyltransferase compare
PP_4829 -1.0 -2.4 putative precorrin-3B synthase compare
PP_5329 -1.0 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2214 -1.0 -2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0901 -1.0 -4.5 DNA-binding response regulator compare
PP_2171 -1.0 -3.3 Transporter, LysE family compare
PP_1268 -1.0 -2.0 putative HtrA suppressor protein sohA compare
PP_0809 -1.0 -4.6 disulfide bond formation protein B compare
PP_1055 -1.0 -1.4 Type II secretion pathway protein GspN compare
PP_1528 -1.0 -0.6 conserved protein of unknown function compare
PP_5628 -0.9 -2.8 conserved protein of unknown function compare
PP_0848 -0.9 -2.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4693 -0.9 -2.4 RNA polymerase-binding transcription factor DksA compare
PP_1553 -0.9 -1.0 conserved protein of unknown function compare
PP_0307 -0.9 -2.2 conserved exported protein of unknown function compare
PP_5582 -0.9 -1.2 conserved protein of unknown function compare
PP_4977 -0.9 -4.5 5,10-methylenetetrahydrofolate reductase compare
PP_2107 -0.9 -1.5 conserved protein of unknown function compare
PP_5008 -0.9 -1.0 Poly granule-associated protein compare
PP_0003 -0.9 -2.1 16S RNA methyltransferase compare
PP_2857 -0.9 -1.1 conserved exported protein of unknown function compare
PP_0789 -0.9 -1.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2152 -0.9 -2.4 glycerophosphoryl diester phosphodiesterase compare
PP_5338 -0.9 -1.7 aspartate ammonia-lyase compare
PP_4879 -0.9 -2.5 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2459 -0.9 -1.9 ribose pyranase compare
PP_0787 -0.9 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0366 -0.9 -3.2 dethiobiotin synthetase compare
PP_5026 -0.9 -4.1 Glucans biosynthesis protein G compare
PP_5609 -0.9 -2.4 conserved protein of unknown function compare
PP_4074 -0.9 -2.5 conserved protein of unknown function compare
PP_3401 -0.9 -2.6 conserved protein of unknown function compare
PP_2032 -0.9 -3.4 putative ATPase compare
PP_4529 -0.9 -2.6 conserved protein of unknown function compare
PP_0872 -0.9 -2.8 Peptide chain release factor 3 compare
PP_1111 -0.9 -3.7 putative Synthetase compare
PP_0775 -0.8 -1.0 conserved protein of unknown function compare
PP_1664 -0.8 -1.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_0516 -0.8 -2.7 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_3850 -0.8 -2.1 conserved protein of unknown function compare
PP_4045 -0.8 -1.0 conserved protein of unknown function compare
PP_1770 -0.8 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5600 -0.8 -1.6 conserved protein of unknown function compare
PP_0378 -0.8 -3.3 Pyrroloquinoline-quinone synthase compare
PP_4993 -0.8 -2.3 Glutathione synthetase compare
PP_4263 -0.8 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1142 -0.8 -0.8 conserved protein of unknown function compare
PP_3061 -0.8 -2.2 conserved protein of unknown function compare
PP_3880 -0.8 -1.2 conserved exported protein of unknown function compare
PP_5027 -0.8 -1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1637 -0.8 -2.5 Transcriptional regulator, LysR family compare
PP_4850 -0.8 -2.0 conserved membrane protein of unknown function compare
PP_4499 -0.8 -2.7 putative maturation enzyme compare
PP_2088 -0.8 -1.6 RNA polymerase sigma factor SigX compare
PP_1176 -0.8 -1.2 conserved protein of unknown function compare
PP_1218 -0.8 -1.4 putative acyl-CoA thioesterase compare
PP_1503 -0.8 -2.1 conserved protein of unknown function compare
PP_2511 -0.8 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For temperature D-Glucose in Pseudomonas putida KT2440

For temperature D-Glucose across organisms