Experiment set22IT093 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -6.8 -4.3 hypothetical protein compare
PS417_25650 -5.5 -3.2 anhydro-N-acetylmuramic acid kinase compare
PS417_13820 -5.5 -7.1 UDP-glucose 6-dehydrogenase compare
PS417_11825 -5.4 -2.0 transcriptional regulator compare
PS417_26985 -5.2 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27290 -5.2 -1.6 hypothetical protein compare
PS417_14065 -5.0 -9.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_11705 -5.0 -8.8 cyclic peptide transporter compare
PS417_00385 -5.0 -0.9 Fur family transcriptional regulator compare
PS417_13795 -4.8 -6.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_15885 -4.7 -1.5 GCN5 family acetyltransferase compare
PS417_04915 -4.6 -1.2 glutamine ABC transporter ATP-binding protein compare
PS417_22450 -4.6 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_02485 -4.6 -4.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_28050 -4.6 -3.5 hypothetical protein compare
PS417_09235 -4.6 -0.8 molecular chaperone compare
PS417_04275 -4.5 -13.9 hypothetical protein compare
PS417_13805 -4.5 -10.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_14960 -4.3 -9.2 ATPase conserved
PS417_02560 -4.3 -1.6 23S rRNA methyltransferase compare
PS417_26900 -4.3 -1.6 L-cystine transporter tcyP compare
PS417_00650 -4.3 -0.8 LysR family transcriptional regulator compare
PS417_13800 -4.2 -2.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_05595 -4.2 -8.2 ornithine carbamoyltransferase compare
PS417_27300 -4.2 -0.8 cell division protein ZapA compare
PS417_24745 -4.1 -1.7 gamma-glutamyl phosphate reductase compare
PS417_08205 -4.1 -3.6 acetyltransferase compare
PS417_21515 -4.1 -10.9 transcriptional regulator compare
PS417_08155 -4.0 -1.2 integration host factor subunit beta compare
PS417_23915 -4.0 -3.4 pantoate--beta-alanine ligase compare
PS417_27795 -3.9 -0.7 orotate phosphoribosyltransferase compare
PS417_21480 -3.8 -1.2 23S rRNA pseudouridylate synthase compare
PS417_06375 -3.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_13790 -3.8 -3.2 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_03380 -3.7 -1.0 hypothetical protein compare
PS417_28515 -3.6 -2.1 16S rRNA methyltransferase compare
PS417_14965 -3.6 -3.6 transcriptional regulator conserved
PS417_27245 -3.6 -3.8 aminotransferase DegT compare
PS417_00355 -3.6 -2.3 metal ABC transporter permease compare
PS417_16490 -3.6 -0.9 cell division protein FtsK compare
PS417_22535 -3.6 -6.2 ornithine acetyltransferase compare
PS417_21125 -3.5 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_08220 -3.5 -0.6 epimerase compare
PS417_07620 -3.5 -0.8 beta-hexosaminidase compare
PS417_27945 -3.5 -0.8 type VI secretion protein ImpA compare
PS417_14945 -3.4 -3.7 beta-lactamase compare
PS417_19955 -3.4 -1.5 hypothetical protein compare
PS417_01620 -3.4 -1.5 preprotein translocase subunit SecB compare
PS417_01915 -3.4 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_11400 -3.4 -1.5 phosphoglycerate mutase compare
PS417_12585 -3.4 -6.7 acriflavine resistance protein B compare
PS417_27195 -3.3 -0.8 N-acetylglutamate synthase compare
PS417_00510 -3.3 -0.9 membrane protein compare
PS417_09930 -3.3 -1.5 hypothetical protein compare
PS417_08620 -3.3 -0.8 hypothetical protein compare
PS417_28220 -3.3 -2.0 LysR family transcriptional regulator compare
PS417_18310 -3.2 -1.0 hypothetical protein compare
PS417_07875 -3.2 -0.8 hypothetical protein compare
PS417_05160 -3.2 -0.8 DNA polymerase III subunit chi compare
PS417_00705 -3.1 -1.5 MarR family transcriptional regulator compare
PS417_03100 -3.1 -0.8 pilus assembly protein compare
PS417_07120 -3.1 -3.9 RNA polymerase sigma-H factor compare
PS417_25225 -3.0 -1.8 MFS transporter compare
PS417_04650 -3.0 -0.8 D-alanine--D-alanine ligase compare
PS417_05525 -2.9 -3.4 Fis family transcriptional regulator compare
PS417_06540 -2.9 -1.2 membrane protein compare
PS417_01605 -2.9 -1.1 phosphoglycerate mutase compare
PS417_26370 -2.8 -3.2 RNA helicase compare
PS417_20160 -2.8 -4.2 cysteine synthase compare
PS417_10040 -2.8 -0.9 MFS transporter compare
PS417_02880 -2.8 -0.7 copper chaperone compare
PS417_25645 -2.8 -2.9 peptidase M23 compare
PS417_02145 -2.8 -8.5 potassium transporter KefA compare
PS417_08125 -2.7 -0.5 prephenate dehydratase compare
PS417_09210 -2.7 -1.3 TetR family transcriptional regulator compare
PS417_22850 -2.7 -5.2 virulence factor family protein compare
PS417_13055 -2.7 -1.4 aminotransferase compare
PS417_04475 -2.7 -2.7 hypothetical protein compare
PS417_22780 -2.6 -3.4 XRE family transcriptional regulator compare
PS417_19350 -2.6 -3.9 GTP cyclohydrolase compare
PS417_24895 -2.6 -1.1 hypothetical protein compare
PS417_02070 -2.5 -0.8 membrane protein compare
PS417_27815 -2.5 -1.4 hypothetical protein compare
PS417_08025 -2.5 -1.3 acetylornithine aminotransferase compare
PS417_24500 -2.5 -2.4 DEAD/DEAH box helicase compare
PS417_03465 -2.5 -1.4 type III secretion protein compare
PS417_05560 -2.4 -1.4 ABC transporter compare
PS417_15470 -2.4 -3.9 saccharopine dehydrogenase compare
PS417_17930 -2.4 -1.4 aldehyde dehydrogenase compare
PS417_26335 -2.3 -1.9 BetI family transcriptional regulator compare
PS417_18395 -2.3 -2.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_26755 -2.3 -1.9 nucleoside-triphosphate diphosphatase compare
PS417_21655 -2.3 -0.8 aspartate kinase compare
PS417_26990 -2.2 -0.6 RNA pyrophosphohydrolase compare
PS417_20930 -2.2 -7.3 50S rRNA methyltransferase compare
PS417_27075 -2.2 -2.2 thiol-disulfide isomerase compare
PS417_22815 -2.1 -3.8 permease compare
PS417_15100 -2.1 -1.9 BatB protein compare
PS417_23770 -2.1 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_21000 -2.1 -1.2 CrfX protein compare
PS417_15650 -2.1 -1.1 glutamine amidotransferase compare
PS417_14710 -2.1 -1.2 isochorismatase compare
PS417_06370 -2.1 -1.2 cold-shock protein compare
PS417_23950 -2.1 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_15435 -2.0 -2.8 metallophosphatase compare
PS417_20785 -2.0 -2.0 transcriptional regulator compare
PS417_24650 -2.0 -1.3 membrane protein compare
PS417_05235 -2.0 -1.6 peptidase inhibitor I42 compare
PS417_21360 -2.0 -0.8 termination factor Rho compare
PS417_04340 -2.0 -3.9 ribosome hibernation promoting factor HPF compare
PS417_25315 -2.0 -3.8 membrane protein compare
PS417_26420 -2.0 -0.9 hypothetical protein compare
PS417_08090 -1.9 -0.5 3-oxoacyl-ACP reductase compare
PS417_20650 -1.9 -5.1 hypothetical protein compare
PS417_06245 -1.9 -1.1 zinc metallopeptidase RseP compare
PS417_03005 -1.9 -4.4 arginine decarboxylase compare
PS417_07420 -1.9 -2.4 restriction endonuclease compare
PS417_10335 -1.9 -1.5 peroxiredoxin compare
PS417_22315 -1.8 -1.6 DNA-3-methyladenine glycosylase compare
PS417_17215 -1.8 -1.8 peptidylprolyl isomerase compare
PS417_22040 -1.8 -1.8 GNAT family acetyltransferase compare
PS417_18060 -1.8 -1.7 general secretion pathway protein GspJ compare
PS417_08230 -1.8 -1.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22375 -1.8 -0.7 cold-shock protein compare
PS417_26175 -1.8 -0.9 sarcosine oxidase subunit gamma compare
PS417_27870 -1.8 -2.0 ATP-dependent DNA helicase RecG compare
PS417_23820 -1.8 -3.0 hypothetical protein compare
PS417_10995 -1.8 -1.9 GntR family transcriptional regulator compare
PS417_03145 -1.7 -1.7 acetyl-CoA acetyltransferase compare
PS417_09580 -1.7 -1.7 tyrosyl-trna synthetase compare
PS417_16555 -1.7 -0.9 cupin compare
PS417_11545 -1.7 -2.7 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_23715 -1.7 -2.2 cupin compare
PS417_27110 -1.7 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_23845 -1.7 -2.4 hemin ABC transporter ATP-binding protein compare
PS417_04380 -1.7 -0.7 ABC transporter permease compare
PS417_12520 -1.7 -2.0 hypothetical protein compare
PS417_25790 -1.7 -2.0 aminoglycoside phosphotransferase compare
PS417_12660 -1.7 -1.2 hypothetical protein compare
PS417_00345 -1.7 -1.4 copper-binding protein compare
PS417_02365 -1.6 -2.8 hypothetical protein compare
PS417_26730 -1.6 -0.4 pyrroline-5-carboxylate reductase compare
PS417_16510 -1.6 -1.8 Clp protease ClpX compare
PS417_23025 -1.6 -3.1 murein transglycosylase compare
PS417_16870 -1.6 -1.4 short-chain dehydrogenase compare
PS417_03560 -1.6 -0.9 GTP-binding protein compare
PS417_11175 -1.6 -1.4 AraC family transcriptional regulator compare
PS417_02695 -1.5 -1.0 protein hupE compare
PS417_26760 -1.5 -2.5 oxidase compare
PS417_03260 -1.5 -0.7 5S ribosomal RNA compare
PS417_10015 -1.5 -0.8 hypothetical protein compare
PS417_00045 -1.5 -1.2 glycerol acyltransferase compare
PS417_22060 -1.5 -0.7 hypothetical protein compare
PS417_04500 -1.5 -0.8 hypothetical protein compare
PS417_01920 -1.5 -0.4 ATP-dependent protease subunit HslV compare
PS417_25780 -1.5 -1.8 molecular chaperone DnaJ compare
PS417_05505 -1.5 -3.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_09045 -1.5 -1.4 histidine kinase compare
PS417_27865 -1.5 -1.7 LysR family transcriptional regulator compare
PS417_01080 -1.5 -2.4 acyl-CoA dehydrogenase compare
PS417_19600 -1.5 -0.8 exonuclease compare
PS417_09245 -1.4 -0.8 recombinase RdgC compare
PS417_13870 -1.4 -2.7 hypothetical protein compare
PS417_12945 -1.4 -2.4 sulfonate ABC transporter ATP-binding protein compare
PS417_16885 -1.4 -1.7 hypothetical protein compare
PS417_02805 -1.4 -1.2 urease subunit gamma compare
PS417_21510 -1.4 -1.0 histidine kinase compare
PS417_26805 -1.4 -0.6 cell division protein FtsE compare
PS417_24430 -1.4 -0.9 3-dehydroquinate dehydratase compare
PS417_20705 -1.4 -2.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_02885 -1.4 -1.4 hypothetical protein compare
PS417_13730 -1.4 -1.1 hypothetical protein compare
PS417_02150 -1.4 -5.9 potassium/proton antiporter compare
PS417_18760 -1.4 -1.9 hypothetical protein compare
PS417_22210 -1.4 -1.2 AraC family transcriptional regulator compare
PS417_07165 -1.4 -3.5 dihydrodipicolinate synthase compare
PS417_23385 -1.4 -5.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_06865 -1.4 -1.8 transporter compare
PS417_08045 -1.4 -1.0 uracil permease compare
PS417_09575 -1.4 -1.5 glutathione S-transferase compare
PS417_06710 -1.4 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_19975 -1.3 -1.2 hypothetical protein compare
PS417_23215 -1.3 -1.6 RNA methyltransferase compare
PS417_12125 -1.3 -2.0 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) compare
PS417_20055 -1.3 -2.1 cob(II)yrinic acid a,c-diamide reductase compare
PS417_24705 -1.3 -1.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_26815 -1.3 -1.3 peptidase M16 compare
PS417_05545 -1.3 -2.5 amino acid ABC transporter ATP-binding protein compare
PS417_22195 -1.3 -2.8 peptidase compare
PS417_15105 -1.3 -4.0 membrane protein compare
PS417_10025 -1.3 -0.9 bacteriophage lambda NinG family protein compare
PS417_21430 -1.3 -1.2 3-oxoacyl-ACP synthase compare
PS417_02975 -1.3 -2.2 3-dehydroquinate dehydratase compare
PS417_11185 -1.3 -1.2 dimethylallyltransferase compare
PS417_04220 -1.3 -0.8 4-carboxymuconolactone decarboxylase compare
PS417_26340 -1.3 -2.5 betaine-aldehyde dehydrogenase compare
PS417_24620 -1.3 -1.8 hypothetical protein compare
PS417_12290 -1.3 -3.3 sulfite reductase compare
PS417_12110 -1.3 -1.0 ATP-binding protein compare
PS417_27935 -1.3 -0.8 type VI secretion protein compare


Specific Phenotypes

For 14 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms