Experiment set22IT092 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -5.2 -5.0 hypothetical protein compare
PS417_00755 -4.2 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_13795 -3.4 -7.3 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13800 -3.3 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13820 -3.1 -7.2 UDP-glucose 6-dehydrogenase compare
PS417_13805 -3.1 -9.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21515 -2.9 -9.4 transcriptional regulator compare
PS417_21480 -2.9 -1.6 23S rRNA pseudouridylate synthase compare
PS417_08125 -2.8 -0.7 prephenate dehydratase compare
PS417_02485 -2.8 -5.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14960 -2.7 -8.1 ATPase conserved
PS417_08245 -2.7 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_02560 -2.7 -1.8 23S rRNA methyltransferase compare
PS417_27135 -2.6 -0.9 glutamine synthetase compare
PS417_22450 -2.6 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_01965 -2.5 -1.9 fimbriae biosynthesis protein compare
PS417_14065 -2.5 -5.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18310 -2.5 -1.4 hypothetical protein compare
PS417_25645 -2.5 -5.8 peptidase M23 compare
PS417_06375 -2.4 -0.8 deoxycytidine triphosphate deaminase compare
PS417_11825 -2.4 -2.3 transcriptional regulator compare
PS417_14965 -2.4 -4.9 transcriptional regulator conserved
PS417_24705 -2.3 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_01605 -2.2 -1.5 phosphoglycerate mutase compare
PS417_18105 -2.2 -1.6 iron-dicitrate transporter substrate-binding subunit compare
PS417_23915 -2.1 -3.2 pantoate--beta-alanine ligase compare
PS417_11705 -2.1 -6.7 cyclic peptide transporter compare
PS417_04500 -2.1 -1.4 hypothetical protein compare
PS417_14945 -2.1 -5.5 beta-lactamase conserved
PS417_24525 -2.1 -2.9 nuclease compare
PS417_19095 -2.1 -1.7 hypothetical protein compare
PS417_21430 -2.0 -2.2 3-oxoacyl-ACP synthase compare
PS417_08090 -2.0 -0.6 3-oxoacyl-ACP reductase compare
PS417_20160 -2.0 -4.0 cysteine synthase compare
PS417_13790 -2.0 -4.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_04275 -1.9 -10.3 hypothetical protein compare
PS417_04380 -1.9 -1.1 ABC transporter permease compare
PS417_00180 -1.9 -2.0 tryptophan synthase subunit alpha compare
PS417_12585 -1.9 -6.8 acriflavine resistance protein B compare
PS417_20650 -1.9 -8.1 hypothetical protein compare
PS417_24500 -1.8 -3.5 DEAD/DEAH box helicase compare
PS417_19350 -1.7 -3.4 GTP cyclohydrolase compare
PS417_22815 -1.7 -6.8 permease compare
PS417_12455 -1.7 -2.3 hydrolase compare
PS417_27935 -1.7 -1.2 type VI secretion protein compare
PS417_05595 -1.7 -6.3 ornithine carbamoyltransferase compare
PS417_07620 -1.6 -1.3 beta-hexosaminidase compare
PS417_23380 -1.6 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_28050 -1.6 -2.8 hypothetical protein compare
PS417_02255 -1.6 -2.1 lipopolysaccharide kinase compare
PS417_25155 -1.6 -1.5 hypothetical protein compare
PS417_01145 -1.6 -0.8 taurine transporter ATP-binding subunit compare
PS417_07035 -1.5 -7.8 uracil-DNA glycosylase compare
PS417_04705 -1.5 -1.6 hypothetical protein compare
PS417_21000 -1.5 -1.3 CrfX protein compare
PS417_27945 -1.5 -1.5 type VI secretion protein ImpA compare
PS417_04650 -1.5 -0.7 D-alanine--D-alanine ligase compare
PS417_26985 -1.4 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_25790 -1.4 -3.8 aminoglycoside phosphotransferase compare
PS417_15895 -1.4 -1.8 iron dicitrate transport regulator FecR compare
PS417_08335 -1.4 -1.8 hypothetical protein compare
PS417_21630 -1.4 -1.7 magnesium transporter compare
PS417_14165 -1.4 -2.9 ArsR family transcriptional regulator compare
PS417_22570 -1.4 -0.6 H-NS histone compare
PS417_24155 -1.4 -0.9 ATP-binding protein compare
PS417_16510 -1.4 -2.4 Clp protease ClpX compare
PS417_27195 -1.4 -1.1 N-acetylglutamate synthase compare
PS417_03380 -1.4 -1.1 hypothetical protein compare
PS417_11390 -1.3 -2.1 LysR family transcriptional regulator compare
PS417_23775 -1.3 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_05830 -1.3 -3.1 hypothetical protein compare
PS417_20785 -1.3 -1.7 transcriptional regulator compare
PS417_27705 -1.3 -1.0 amino acid dehydrogenase compare
PS417_08410 -1.3 -1.7 hypothetical protein compare
PS417_16520 -1.3 -1.0 cold-shock protein compare
PS417_27035 -1.3 -3.2 FAD-linked oxidase compare
PS417_02370 -1.3 -1.3 ADP-ribose pyrophosphatase compare
PS417_28070 -1.3 -5.9 phosphate ABC transporter ATP-binding protein compare
PS417_20715 -1.3 -1.8 cytochrome Cbb3 compare
PS417_20185 -1.3 -2.6 ketosteroid isomerase compare
PS417_18545 -1.3 -1.9 cell division protein compare
PS417_22375 -1.3 -0.7 cold-shock protein compare
PS417_25650 -1.2 -1.7 anhydro-N-acetylmuramic acid kinase compare
PS417_18885 -1.2 -1.7 GntR family transcriptional regulator compare
PS417_26370 -1.2 -2.5 RNA helicase compare
PS417_02720 -1.2 -0.7 TetR family transcriptional regulator compare
PS417_23385 -1.2 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_00345 -1.2 -1.4 copper-binding protein compare
PS417_17980 -1.2 -2.4 ABC transporter permease compare
PS417_14105 -1.2 -2.3 6-O-methylguanine DNA methyltransferase compare
PS417_13055 -1.2 -1.8 aminotransferase compare
PS417_14425 -1.2 -2.6 alkylhydroperoxidase compare
PS417_22445 -1.2 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_08025 -1.2 -1.1 acetylornithine aminotransferase compare
PS417_01825 -1.2 -2.0 chemotaxis protein compare
PS417_27865 -1.2 -2.1 LysR family transcriptional regulator compare
PS417_13590 -1.2 -2.5 histidine kinase compare
PS417_18055 -1.2 -0.9 general secretion pathway protein GspK compare
PS417_04875 -1.2 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_14940 -1.1 -1.2 LysR family transcriptional regulator compare
PS417_20930 -1.1 -5.2 50S rRNA methyltransferase compare
PS417_04960 -1.1 -1.3 hypothetical protein compare
PS417_26695 -1.1 -0.9 uracil phosphoribosyltransferase compare
PS417_00380 -1.1 -3.2 zinc ABC transporter ATP-binding protein compare
PS417_13855 -1.1 -0.8 acetyl-CoA acetyltransferase compare
PS417_23995 -1.1 -0.6 preprotein translocase subunit SecG compare
PS417_05140 -1.1 -1.3 dipicolinate synthase compare
PS417_12110 -1.1 -1.3 ATP-binding protein compare
PS417_18020 -1.1 -0.9 hypothetical protein compare
PS417_23490 -1.1 -1.0 dihydrofolate reductase compare
PS417_17565 -1.1 -2.1 branched-chain amino acid aminotransferase compare
PS417_07820 -1.1 -1.6 transposase compare
PS417_15370 -1.1 -1.3 kinase compare
PS417_00495 -1.1 -2.7 ABC transporter permease compare
PS417_28080 -1.1 -6.7 phosphate ABC transporter permease compare
PS417_08130 -1.1 -1.4 aspartate aminotransferase compare
PS417_05535 -1.1 -1.0 Fis family transcriptional regulator compare
PS417_13785 -1.1 -2.0 hypothetical protein compare
PS417_08195 -1.1 -3.7 hypothetical protein compare
PS417_23105 -1.0 -1.1 hypothetical protein compare
PS417_16560 -1.0 -1.5 GNAT family acetyltransferase compare
PS417_13645 -1.0 -2.1 ABC transporter compare
PS417_21210 -1.0 -1.4 amidotransferase compare
PS417_07270 -1.0 -1.6 LysR family transcriptional regulator compare
PS417_27795 -1.0 -0.5 orotate phosphoribosyltransferase compare
PS417_03000 -1.0 -3.0 translation initiation factor Sui1 compare
PS417_00355 -1.0 -1.6 metal ABC transporter permease compare
PS417_07170 -1.0 -2.7 hypothetical protein compare
PS417_08230 -1.0 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_02340 -1.0 -2.6 LysR family transcriptional regulator compare
PS417_22060 -1.0 -0.9 hypothetical protein compare
PS417_02700 -1.0 -2.4 urease accessory protein UreG compare
PS417_22780 -1.0 -2.1 XRE family transcriptional regulator compare
PS417_17630 -1.0 -1.3 RNA polymerase sigma factor compare
PS417_19190 -1.0 -2.4 BolA family transcriptional regulator compare
PS417_21655 -1.0 -0.7 aspartate kinase compare
PS417_09085 -1.0 -1.0 hypothetical protein compare
PS417_02630 -1.0 -2.0 NAD synthetase compare
PS417_01390 -1.0 -5.5 PbsX family transcriptional regulator compare
PS417_27300 -1.0 -0.5 cell division protein ZapA compare
PS417_03465 -1.0 -0.9 type III secretion protein compare
PS417_19605 -1.0 -1.0 hypothetical protein compare
PS417_15100 -1.0 -1.2 BatB protein compare
PS417_10145 -1.0 -1.7 hypothetical protein compare
PS417_11615 -1.0 -1.1 urea ABC transporter ATP-binding protein compare
PS417_09200 -1.0 -1.7 ABC transporter compare
PS417_15935 -1.0 -1.2 Rrf2 family transcriptional regulator compare
PS417_22810 -1.0 -1.4 DNA base-flipping protein YbaZ compare
PS417_09440 -1.0 -0.8 MerR family transcriptional regulator compare
PS417_20855 -1.0 -0.7 hypothetical protein compare
PS417_26340 -1.0 -4.4 betaine-aldehyde dehydrogenase compare
PS417_11555 -1.0 -2.1 (2Fe-2S)-binding protein compare
PS417_13730 -1.0 -1.5 hypothetical protein compare
PS417_03005 -0.9 -3.4 arginine decarboxylase compare
PS417_27105 -0.9 -2.6 spermidine/putrescine ABC transporter permease compare
PS417_17840 -0.9 -1.3 betaine-aldehyde dehydrogenase compare
PS417_26900 -0.9 -1.1 L-cystine transporter tcyP compare
PS417_10305 -0.9 -1.6 hypothetical protein compare
PS417_04050 -0.9 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_16790 -0.9 -2.0 ABC transporter permease compare
PS417_21125 -0.9 -3.0 phosphoadenosine phosphosulfate reductase compare
PS417_12765 -0.9 -2.7 oxidoreductase compare
PS417_22990 -0.9 -0.5 iron dicitrate transport regulator FecR compare
PS417_01760 -0.9 -2.2 imidazolonepropionase compare
PS417_05505 -0.9 -2.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06200 -0.9 -3.0 protein-PII uridylyltransferase compare
PS417_00310 -0.9 -3.2 cysteine synthase compare
PS417_08740 -0.9 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_04290 -0.9 -1.9 hypothetical protein compare
PS417_14835 -0.9 -2.4 amidase compare
PS417_02145 -0.9 -3.4 potassium transporter KefA compare
PS417_10985 -0.9 -0.6 NADH:flavin oxidoreductase compare
PS417_07640 -0.9 -1.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22840 -0.9 -1.0 tRNA-Met compare
PS417_13895 -0.9 -1.7 chemotaxis protein CheB compare
PS417_23825 -0.9 -3.5 penicillin-binding protein compare
PS417_15400 -0.9 -0.8 hypothetical protein compare
PS417_11475 -0.9 -1.7 membrane protein compare
PS417_08730 -0.8 -0.9 cytochrome C compare
PS417_27230 -0.8 -2.6 membrane protein implicated in regulation of membrane protease activity compare
PS417_17795 -0.8 -1.0 ABC transporter permease compare
PS417_28525 -0.8 -3.5 RNA polymerase sigma factor compare
PS417_20080 -0.8 -1.5 peptidase P60 compare
PS417_20055 -0.8 -1.7 cob(II)yrinic acid a,c-diamide reductase compare
PS417_23855 -0.8 -0.7 ABC transporter substrate-binding protein compare
PS417_22350 -0.8 -0.8 Fis family transcriptional regulator compare
PS417_01410 -0.8 -4.0 transporter compare
PS417_14325 -0.8 -1.6 AraC family transcriptional regulator compare
PS417_21710 -0.8 -2.6 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_01130 -0.8 -1.9 L-glyceraldehyde 3-phosphate reductase compare
PS417_03300 -0.8 -2.2 alanine acetyltransferase compare
PS417_09930 -0.8 -1.0 hypothetical protein compare
PS417_13985 -0.8 -2.4 dehydrogenase compare
PS417_00175 -0.8 -0.6 CigR compare
PS417_01380 -0.8 -2.3 nucleotide cyclase compare
PS417_18905 -0.8 -1.8 acyl-CoA dehydrogenase compare
PS417_16555 -0.8 -0.7 cupin compare
PS417_17125 -0.8 -1.8 transcriptional regulator compare
PS417_01420 -0.8 -4.9 histidine kinase compare
PS417_26175 -0.8 -0.7 sarcosine oxidase subunit gamma compare


Specific Phenotypes

For 6 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms