Experiment set22IT091 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_13820 -5.8 -7.0 UDP-glucose 6-dehydrogenase compare
PS417_24835 -5.5 -5.3 hypothetical protein compare
PS417_14965 -5.4 -5.2 transcriptional regulator conserved
PS417_13805 -5.0 -12.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13795 -4.9 -8.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_14960 -4.8 -9.8 ATPase conserved
PS417_14065 -4.6 -7.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21515 -4.2 -8.3 transcriptional regulator compare
PS417_24500 -4.2 -4.1 DEAD/DEAH box helicase compare
PS417_21480 -4.2 -1.5 23S rRNA pseudouridylate synthase compare
PS417_27795 -4.1 -0.9 orotate phosphoribosyltransferase compare
PS417_02485 -4.0 -4.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06375 -4.0 -0.9 deoxycytidine triphosphate deaminase compare
PS417_11825 -4.0 -2.9 transcriptional regulator compare
PS417_22450 -3.7 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_04275 -3.6 -14.8 hypothetical protein compare
PS417_01915 -3.6 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26605 -3.5 -1.1 malonate decarboxylase subunit beta compare
PS417_14945 -3.5 -5.2 beta-lactamase compare
PS417_28050 -3.5 -4.0 hypothetical protein compare
PS417_07620 -3.4 -1.3 beta-hexosaminidase compare
PS417_22535 -3.4 -6.3 ornithine acetyltransferase compare
PS417_25645 -3.3 -5.6 peptidase M23 compare
PS417_26985 -3.3 -7.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21125 -3.2 -8.4 phosphoadenosine phosphosulfate reductase compare
PS417_23915 -3.1 -4.4 pantoate--beta-alanine ligase compare
PS417_16490 -3.1 -1.3 cell division protein FtsK compare
PS417_08125 -3.0 -0.6 prephenate dehydratase compare
PS417_19095 -3.0 -2.0 hypothetical protein compare
PS417_04475 -2.8 -3.8 hypothetical protein compare
PS417_15090 -2.7 -2.9 hypothetical protein compare
PS417_16555 -2.7 -1.4 cupin compare
PS417_11705 -2.7 -8.0 cyclic peptide transporter compare
PS417_12585 -2.7 -8.2 acriflavine resistance protein B compare
PS417_19350 -2.6 -5.1 GTP cyclohydrolase compare
PS417_13800 -2.6 -2.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_24615 -2.6 -1.0 hypothetical protein compare
PS417_05975 -2.5 -0.7 chemotaxis protein CheW compare
PS417_06600 -2.5 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_22815 -2.5 -6.7 permease compare
PS417_05595 -2.5 -4.7 ornithine carbamoyltransferase compare
PS417_25790 -2.5 -4.4 aminoglycoside phosphotransferase compare
PS417_13790 -2.4 -2.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_26990 -2.4 -0.7 RNA pyrophosphohydrolase compare
PS417_07170 -2.4 -4.9 hypothetical protein compare
PS417_05510 -2.3 -5.4 alpha/beta hydrolase compare
PS417_08730 -2.3 -1.8 cytochrome C compare
PS417_00045 -2.3 -1.8 glycerol acyltransferase compare
PS417_13065 -2.3 -4.1 UDP pyrophosphate phosphatase compare
PS417_20160 -2.2 -2.8 cysteine synthase compare
PS417_26770 -2.2 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_21655 -2.2 -1.1 aspartate kinase compare
PS417_20715 -2.1 -2.4 cytochrome Cbb3 compare
PS417_22850 -2.1 -7.9 virulence factor family protein compare
PS417_06500 -2.1 -1.3 hypothetical protein compare
PS417_22840 -2.0 -1.4 tRNA-Met compare
PS417_04185 -2.0 -2.6 hypothetical protein compare
PS417_24745 -2.0 -2.8 gamma-glutamyl phosphate reductase compare
PS417_02145 -2.0 -7.0 potassium transporter KefA compare
PS417_19955 -2.0 -1.6 hypothetical protein compare
PS417_15875 -1.9 -2.1 LuxR family transcriptional regulator compare
PS417_27935 -1.9 -1.2 type VI secretion protein compare
PS417_27585 -1.9 -1.6 diaminopimelate epimerase compare
PS417_02630 -1.9 -2.2 NAD synthetase compare
PS417_18545 -1.8 -2.4 cell division protein compare
PS417_08205 -1.8 -2.7 acetyltransferase compare
PS417_26730 -1.8 -0.5 pyrroline-5-carboxylate reductase compare
PS417_25650 -1.8 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_05505 -1.8 -4.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_23250 -1.8 -4.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_08365 -1.7 -0.8 hypothetical protein compare
PS417_12355 -1.7 -1.6 magnesium chelatase compare
PS417_22210 -1.7 -1.6 AraC family transcriptional regulator compare
PS417_03000 -1.7 -3.7 translation initiation factor Sui1 compare
PS417_13510 -1.7 -1.0 polyketide cyclase compare
PS417_27135 -1.7 -0.7 glutamine synthetase compare
PS417_05525 -1.6 -3.4 Fis family transcriptional regulator compare
PS417_06245 -1.6 -1.3 zinc metallopeptidase RseP compare
PS417_27195 -1.6 -1.1 N-acetylglutamate synthase compare
PS417_02150 -1.6 -5.6 potassium/proton antiporter compare
PS417_08245 -1.6 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_17610 -1.6 -1.6 AsnC family transcriptional regulator compare
PS417_20930 -1.6 -5.6 50S rRNA methyltransferase compare
PS417_10015 -1.5 -1.0 hypothetical protein compare
PS417_26175 -1.5 -1.1 sarcosine oxidase subunit gamma compare
PS417_20785 -1.5 -2.4 transcriptional regulator compare
PS417_23770 -1.5 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_28225 -1.5 -1.1 hypothetical protein compare
PS417_07120 -1.5 -3.6 RNA polymerase sigma-H factor compare
PS417_27705 -1.5 -1.1 amino acid dehydrogenase compare
PS417_23775 -1.5 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_26370 -1.5 -2.5 RNA helicase compare
PS417_17980 -1.5 -1.8 ABC transporter permease compare
PS417_02880 -1.4 -1.0 copper chaperone compare
PS417_20650 -1.4 -4.8 hypothetical protein compare
PS417_27005 -1.4 -0.8 membrane protein compare
PS417_01605 -1.4 -1.1 phosphoglycerate mutase compare
PS417_20705 -1.4 -3.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_27245 -1.4 -1.3 aminotransferase DegT compare
PS417_27040 -1.4 -1.8 3-phosphoglycerate dehydrogenase compare
PS417_22195 -1.4 -4.4 peptidase compare
PS417_03260 -1.4 -0.9 5S ribosomal RNA compare
PS417_24230 -1.4 -4.6 ATP-dependent protease compare
PS417_02885 -1.4 -2.0 hypothetical protein compare
PS417_00845 -1.4 -1.2 transcriptional regulator compare
PS417_00345 -1.4 -1.4 copper-binding protein compare
PS417_07560 -1.4 -0.8 universal stress protein UspA compare
PS417_22445 -1.4 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_07035 -1.3 -4.8 uracil-DNA glycosylase compare
PS417_22690 -1.3 -2.6 phosphogluconate dehydratase compare
PS417_26335 -1.3 -1.7 BetI family transcriptional regulator compare
PS417_02975 -1.3 -3.1 3-dehydroquinate dehydratase compare
PS417_05830 -1.3 -2.4 hypothetical protein compare
PS417_08685 -1.3 -1.1 flagellar hook-length control protein FliK compare
PS417_03705 -1.3 -2.3 2-alkenal reductase compare
PS417_12110 -1.3 -1.5 ATP-binding protein compare
PS417_09335 -1.3 -1.5 HAD family hydrolase compare
PS417_02365 -1.3 -2.5 hypothetical protein compare
PS417_26340 -1.3 -4.0 betaine-aldehyde dehydrogenase compare
PS417_13645 -1.2 -2.2 ABC transporter compare
PS417_14755 -1.2 -1.5 UV damage repair endonuclease UvdE compare
PS417_02555 -1.2 -7.5 exoribonuclease R compare
PS417_08220 -1.2 -0.5 epimerase compare
PS417_15770 -1.2 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_09210 -1.2 -1.1 TetR family transcriptional regulator compare
PS417_01405 -1.2 -2.1 sugar transporter compare
PS417_21425 -1.2 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_27085 -1.2 -1.6 AraC family transcriptional regulator compare
PS417_22260 -1.2 -1.5 segregation and condensation protein B compare
PS417_02225 -1.2 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06465 -1.2 -1.8 transcriptional regulator compare
PS417_28275 -1.2 -1.5 cobalamin biosynthesis protein CobW compare
PS417_04305 -1.1 -0.8 aspartate ammonia-lyase compare
PS417_06835 -1.1 -1.0 phospholipase compare
PS417_00405 -1.1 -6.2 DNA polymerase I compare
PS417_02405 -1.1 -3.8 hypothetical protein compare
PS417_08195 -1.1 -4.5 hypothetical protein compare
PS417_02805 -1.1 -1.3 urease subunit gamma compare
PS417_26760 -1.1 -2.4 oxidase compare
PS417_17125 -1.1 -2.4 transcriptional regulator compare
PS417_09745 -1.1 -2.7 peptide ABC transporter substrate-binding protein compare
PS417_08000 -1.1 -3.7 beta-hydroxylase compare
PS417_03005 -1.1 -3.6 arginine decarboxylase compare
PS417_02980 -1.1 -0.9 chemotaxis protein compare
PS417_23545 -1.1 -0.7 gamma-glutamyl kinase compare
PS417_08540 -1.1 -1.4 RNA helicase compare
PS417_03465 -1.1 -1.1 type III secretion protein compare
PS417_23995 -1.1 -0.5 preprotein translocase subunit SecG compare
PS417_18710 -1.1 -3.6 hypothetical protein compare
PS417_21000 -1.1 -0.9 CrfX protein compare
PS417_21510 -1.1 -1.0 histidine kinase compare
PS417_25390 -1.1 -2.0 MFS transporter compare
PS417_05650 -1.1 -2.0 leucyl-tRNA synthetase compare
PS417_15100 -1.1 -1.8 BatB protein compare
PS417_21210 -1.1 -1.6 amidotransferase compare
PS417_11615 -1.1 -1.2 urea ABC transporter ATP-binding protein compare
PS417_16510 -1.0 -2.2 Clp protease ClpX compare
PS417_27435 -1.0 -3.9 polyphosphate kinase compare
PS417_07985 -1.0 -1.1 AbrB family transcriptional regulator compare
PS417_28070 -1.0 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_12820 -1.0 -1.8 hypothetical protein compare
PS417_14515 -1.0 -0.9 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_04375 -1.0 -1.1 ABC transporter ATP-binding protein compare
PS417_16045 -1.0 -1.6 acyl-CoA dehydrogenase compare
PS417_16515 -1.0 -1.2 Clp protease ClpS compare
PS417_14075 -1.0 -1.1 hypothetical protein compare
PS417_28080 -1.0 -6.3 phosphate ABC transporter permease compare
PS417_23170 -1.0 -0.9 FeS assembly protein IscX compare
PS417_25120 -1.0 -2.7 capsular biosynthesis protein compare
PS417_17925 -1.0 -1.4 acyl-CoA dehydrogenase compare
PS417_27505 -1.0 -2.0 transcriptional regulator compare
PS417_05160 -1.0 -0.6 DNA polymerase III subunit chi compare
PS417_03560 -1.0 -0.8 GTP-binding protein compare
PS417_08410 -1.0 -0.9 hypothetical protein compare
PS417_20985 -1.0 -0.5 porin compare
PS417_04225 -1.0 -1.7 conjugal transfer protein TraR compare
PS417_26065 -1.0 -3.0 RNA polymerase sigma factor compare
PS417_12900 -1.0 -2.7 Fe-S protein compare
PS417_05140 -1.0 -1.1 dipicolinate synthase compare
PS417_12555 -1.0 -3.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_20080 -1.0 -1.3 peptidase P60 compare
PS417_19275 -1.0 -0.9 hypothetical protein compare
PS417_28185 -1.0 -1.4 homocysteine methyltransferase compare
PS417_05545 -1.0 -2.2 amino acid ABC transporter ATP-binding protein compare
PS417_21085 -1.0 -2.4 GntR family transcriptional regulator compare
PS417_04290 -0.9 -2.5 hypothetical protein compare
PS417_06370 -0.9 -1.0 cold-shock protein compare
PS417_18425 -0.9 -1.1 sporulation protein compare
PS417_19945 -0.9 -2.6 MarR family transcriptional regulator compare
PS417_21360 -0.9 -0.7 termination factor Rho compare
PS417_17345 -0.9 -1.8 hypothetical protein compare
PS417_01340 -0.9 -3.0 agmatine deiminase compare
PS417_13640 -0.9 -1.6 ribose ABC transporter permease compare
PS417_22005 -0.9 -1.7 epimerase compare
PS417_09420 -0.9 -1.3 LysR family transcriptional regulator compare
PS417_08230 -0.9 -0.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_12710 -0.9 -2.6 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_03300 -0.9 -1.5 alanine acetyltransferase compare
PS417_19285 -0.9 -0.7 ankyrin compare
PS417_04525 -0.9 -2.3 16S rRNA methyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms