Experiment set22IT090 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -7.7 -5.0 hypothetical protein compare
PS417_02485 -5.6 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13800 -5.4 -3.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13805 -5.3 -11.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13795 -5.3 -10.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13820 -5.0 -5.0 UDP-glucose 6-dehydrogenase compare
PS417_14965 -4.9 -4.9 transcriptional regulator conserved
PS417_21515 -4.9 -14.5 transcriptional regulator compare
PS417_04275 -4.6 -13.6 hypothetical protein compare
PS417_14065 -4.5 -8.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_21125 -4.4 -6.0 phosphoadenosine phosphosulfate reductase compare
PS417_11825 -4.4 -2.9 transcriptional regulator compare
PS417_14945 -4.2 -9.0 beta-lactamase compare
PS417_27300 -4.2 -1.0 cell division protein ZapA compare
PS417_26985 -4.0 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14960 -4.0 -9.6 ATPase conserved
PS417_27795 -3.9 -1.0 orotate phosphoribosyltransferase compare
PS417_07120 -3.9 -6.7 RNA polymerase sigma-H factor compare
PS417_08220 -3.6 -0.9 epimerase compare
PS417_11705 -3.5 -9.8 cyclic peptide transporter compare
PS417_11400 -3.5 -2.1 phosphoglycerate mutase compare
PS417_05595 -3.5 -8.7 ornithine carbamoyltransferase compare
PS417_01915 -3.4 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_13790 -3.4 -3.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_27195 -3.4 -1.1 N-acetylglutamate synthase compare
PS417_22815 -3.3 -8.8 permease compare
PS417_06245 -3.2 -2.0 zinc metallopeptidase RseP compare
PS417_04475 -3.2 -4.6 hypothetical protein compare
PS417_27245 -3.2 -4.1 aminotransferase DegT compare
PS417_26370 -3.1 -3.9 RNA helicase compare
PS417_01605 -3.0 -1.5 phosphoglycerate mutase compare
PS417_22450 -3.0 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_02880 -2.8 -0.9 copper chaperone compare
PS417_03260 -2.8 -0.8 5S ribosomal RNA compare
PS417_19285 -2.7 -1.5 ankyrin compare
PS417_23915 -2.6 -4.6 pantoate--beta-alanine ligase compare
PS417_25650 -2.6 -2.4 anhydro-N-acetylmuramic acid kinase compare
PS417_25645 -2.5 -5.2 peptidase M23 compare
PS417_18310 -2.5 -1.5 hypothetical protein compare
PS417_05500 -2.5 -2.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_04595 -2.3 -2.0 cell division protein MraZ compare
PS417_28050 -2.3 -2.5 hypothetical protein compare
PS417_21480 -2.3 -1.2 23S rRNA pseudouridylate synthase compare
PS417_06375 -2.3 -0.8 deoxycytidine triphosphate deaminase compare
PS417_16490 -2.3 -1.3 cell division protein FtsK compare
PS417_22850 -2.3 -5.6 virulence factor family protein compare
PS417_22535 -2.3 -4.6 ornithine acetyltransferase compare
PS417_20160 -2.3 -3.0 cysteine synthase compare
PS417_23770 -2.2 -1.2 exodeoxyribonuclease V subunit alpha compare
PS417_00705 -2.2 -1.7 MarR family transcriptional regulator compare
PS417_07620 -2.2 -1.7 beta-hexosaminidase compare
PS417_02145 -2.2 -6.6 potassium transporter KefA compare
PS417_19350 -2.2 -4.1 GTP cyclohydrolase compare
PS417_08335 -2.2 -1.8 hypothetical protein compare
PS417_19945 -2.1 -3.7 MarR family transcriptional regulator compare
PS417_02950 -2.1 -2.3 tRNA-dihydrouridine synthase B compare
PS417_07560 -2.0 -1.6 universal stress protein UspA compare
PS417_20785 -2.0 -3.0 transcriptional regulator compare
PS417_21360 -2.0 -1.1 termination factor Rho compare
PS417_25790 -2.0 -3.5 aminoglycoside phosphotransferase compare
PS417_08230 -1.9 -1.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00175 -1.9 -1.1 CigR compare
PS417_03145 -1.9 -2.4 acetyl-CoA acetyltransferase compare
PS417_24500 -1.9 -2.3 DEAD/DEAH box helicase compare
PS417_05510 -1.9 -4.2 alpha/beta hydrolase compare
PS417_12585 -1.9 -3.4 acriflavine resistance protein B compare
PS417_03005 -1.9 -7.3 arginine decarboxylase compare
PS417_20930 -1.8 -5.2 50S rRNA methyltransferase compare
PS417_02980 -1.8 -1.3 chemotaxis protein compare
PS417_27110 -1.7 -2.9 spermidine/putrescine ABC transporter permease compare
PS417_00045 -1.7 -1.7 glycerol acyltransferase compare
PS417_12935 -1.7 -1.7 RNA polymerase sigma factor compare
PS417_23375 -1.7 -1.7 cytochrome C oxidase compare
PS417_05505 -1.7 -4.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02560 -1.7 -1.4 23S rRNA methyltransferase compare
PS417_16510 -1.7 -2.1 Clp protease ClpX compare
PS417_06540 -1.7 -1.2 membrane protein compare
PS417_07615 -1.7 -4.3 TetR family transcriptional regulator compare
PS417_13510 -1.7 -1.1 polyketide cyclase compare
PS417_26730 -1.7 -0.6 pyrroline-5-carboxylate reductase compare
PS417_26770 -1.7 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_13065 -1.7 -3.2 UDP pyrophosphate phosphatase compare
PS417_26340 -1.6 -5.9 betaine-aldehyde dehydrogenase compare
PS417_07170 -1.6 -3.9 hypothetical protein compare
PS417_24705 -1.6 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_00510 -1.6 -1.0 membrane protein compare
PS417_22580 -1.6 -2.3 membrane protein compare
PS417_01095 -1.6 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_02150 -1.6 -5.3 potassium/proton antiporter compare
PS417_05985 -1.6 -2.2 chemotaxis protein CheY compare
PS417_18425 -1.5 -1.5 sporulation protein compare
PS417_27435 -1.5 -4.3 polyphosphate kinase compare
PS417_27040 -1.5 -1.6 3-phosphoglycerate dehydrogenase compare
PS417_20030 -1.5 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_02975 -1.5 -3.0 3-dehydroquinate dehydratase compare
PS417_09085 -1.5 -1.2 hypothetical protein compare
PS417_03455 -1.5 -1.3 type III secretion protein compare
PS417_08205 -1.5 -2.3 acetyltransferase compare
PS417_20080 -1.5 -3.5 peptidase P60 compare
PS417_01965 -1.5 -1.4 fimbriae biosynthesis protein compare
PS417_24115 -1.4 -1.5 hypothetical protein compare
PS417_18710 -1.4 -3.3 hypothetical protein compare
PS417_00385 -1.4 -0.9 Fur family transcriptional regulator compare
PS417_24230 -1.4 -4.2 ATP-dependent protease compare
PS417_03525 -1.4 -1.3 hypothetical protein compare
PS417_09440 -1.4 -1.5 MerR family transcriptional regulator compare
PS417_21430 -1.4 -1.7 3-oxoacyl-ACP synthase compare
PS417_22875 -1.4 -1.6 hypothetical protein compare
PS417_20715 -1.4 -1.8 cytochrome Cbb3 compare
PS417_26260 -1.4 -1.5 hypothetical protein compare
PS417_26240 -1.4 -1.3 N-methylproline demethylase compare
PS417_23625 -1.4 -1.9 LysR family transcriptional regulator compare
PS417_01960 -1.4 -2.7 pilus assembly protein compare
PS417_19065 -1.3 -0.8 monooxygenase compare
PS417_02885 -1.3 -2.1 hypothetical protein compare
PS417_08540 -1.3 -1.6 RNA helicase compare
PS417_07470 -1.3 -1.1 hypothetical protein compare
PS417_15090 -1.3 -1.3 hypothetical protein compare
PS417_24370 -1.3 -0.7 (2Fe-2S)-binding protein compare
PS417_02870 -1.3 -4.7 TonB-dependent receptor compare
PS417_20650 -1.3 -5.3 hypothetical protein compare
PS417_26990 -1.3 -0.6 RNA pyrophosphohydrolase compare
PS417_24030 -1.3 -1.7 MFS transporter compare
PS417_04220 -1.3 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_22980 -1.3 -2.6 GntR family transcriptional regulator compare
PS417_10985 -1.3 -0.8 NADH:flavin oxidoreductase compare
PS417_04380 -1.3 -0.8 ABC transporter permease compare
PS417_25985 -1.3 -1.5 dethiobiotin synthetase compare
PS417_08245 -1.3 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_00975 -1.2 -1.1 hypothetical protein compare
PS417_03705 -1.2 -3.7 2-alkenal reductase compare
PS417_05525 -1.2 -3.1 Fis family transcriptional regulator compare
PS417_01620 -1.2 -1.4 preprotein translocase subunit SecB compare
PS417_05165 -1.2 -2.1 cytosol aminopeptidase compare
PS417_16750 -1.2 -1.7 ABC transporter ATP-binding protein compare
PS417_28295 -1.2 -2.2 glutamine synthetase compare
PS417_24555 -1.2 -2.8 polyribonucleotide nucleotidyltransferase compare
PS417_16515 -1.2 -1.9 Clp protease ClpS compare
PS417_08000 -1.2 -4.3 beta-hydroxylase compare
PS417_24135 -1.2 -1.4 hypothetical protein compare
PS417_24745 -1.2 -2.0 gamma-glutamyl phosphate reductase compare
PS417_04340 -1.2 -3.2 ribosome hibernation promoting factor HPF compare
PS417_12890 -1.2 -3.1 methyltransferase compare
PS417_06370 -1.2 -1.0 cold-shock protein compare
PS417_27075 -1.2 -1.6 thiol-disulfide isomerase compare
PS417_15540 -1.2 -0.9 NUDIX hydrolase compare
PS417_16020 -1.2 -2.1 LysR family transcriptional regulator compare
PS417_13455 -1.2 -1.9 alkaline proteinase inhibitor compare
PS417_03730 -1.2 -2.3 phosphate acetyltransferase compare
PS417_07945 -1.2 -1.6 hypothetical protein compare
PS417_15465 -1.2 -2.0 carboxynorspermidine decarboxylase compare
PS417_21630 -1.2 -1.6 magnesium transporter compare
PS417_17945 -1.2 -0.6 hypothetical protein compare
PS417_08195 -1.2 -4.5 hypothetical protein compare
PS417_00755 -1.2 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_27115 -1.1 -3.9 putrescine ABC transporter, ATPase component (from data) compare
PS417_22935 -1.1 -2.2 hypothetical protein compare
PS417_25915 -1.1 -1.3 carbon-nitrogen hydrolase compare
PS417_18105 -1.1 -1.2 iron-dicitrate transporter substrate-binding subunit compare
PS417_28350 -1.1 -4.1 fatty acid methyltransferase compare
PS417_02405 -1.1 -2.7 hypothetical protein compare
PS417_02255 -1.1 -1.7 lipopolysaccharide kinase compare
PS417_21760 -1.1 -0.9 hypothetical protein compare
PS417_20825 -1.1 -1.6 drug:proton antiporter compare
PS417_02415 -1.1 -1.6 phosphoserine phosphatase compare
PS417_25390 -1.1 -3.2 MFS transporter compare
PS417_25380 -1.1 -2.1 hypothetical protein compare
PS417_16815 -1.1 -1.7 acyl-CoA dehydrogenase compare
PS417_01030 -1.1 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_12160 -1.1 -1.8 Fis family transcriptional regulator compare
PS417_24265 -1.1 -2.1 ABC transporter ATP-binding protein compare
PS417_24240 -1.1 -3.8 membrane protein compare
PS417_08730 -1.1 -1.1 cytochrome C compare
PS417_04025 -1.1 -4.4 glycine/betaine ABC transporter permease compare
PS417_01290 -1.1 -0.6 ADP-ribose diphosphatase compare
PS417_23025 -1.1 -2.0 murein transglycosylase compare
PS417_02365 -1.1 -2.2 hypothetical protein compare
PS417_15665 -1.1 -1.3 hypothetical protein compare
PS417_22250 -1.1 -3.3 pseudouridine synthase compare
PS417_03300 -1.1 -2.1 alanine acetyltransferase compare
PS417_18070 -1.1 -0.7 general secretion pathway protein GspH compare
PS417_26760 -1.0 -3.6 oxidase compare
PS417_08025 -1.0 -0.8 acetylornithine aminotransferase compare
PS417_25825 -1.0 -2.2 sulfurtransferase compare
PS417_12660 -1.0 -1.3 hypothetical protein compare
PS417_22845 -1.0 -6.7 membrane protein compare
PS417_12110 -1.0 -1.2 ATP-binding protein compare
PS417_01115 -1.0 -0.9 serine acetyltransferase compare
PS417_00185 -1.0 -1.5 tryptophan synthase subunit beta compare
PS417_22565 -1.0 -0.5 formyltetrahydrofolate deformylase compare
PS417_07035 -1.0 -4.4 uracil-DNA glycosylase compare
PS417_00180 -1.0 -1.2 tryptophan synthase subunit alpha compare
PS417_03935 -1.0 -1.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_11535 -1.0 -1.7 nicotinate phosphoribosyltransferase compare
PS417_20115 -1.0 -1.2 hypothetical protein compare
PS417_00900 -1.0 -1.6 4-aminobutyrate aminotransferase compare
PS417_26815 -1.0 -1.5 peptidase M16 compare
PS417_23775 -1.0 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_00455 -1.0 -1.1 hypothetical protein compare
PS417_02555 -1.0 -5.6 exoribonuclease R compare


Specific Phenotypes

For 12 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms