Experiment set22IT089 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_11825 -5.6 -2.6 transcriptional regulator compare
PS417_13805 -5.1 -11.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13795 -5.0 -7.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_14065 -4.8 -8.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22375 -4.8 -1.1 cold-shock protein compare
PS417_22450 -4.7 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_14960 -4.7 -8.9 ATPase conserved
PS417_13800 -4.5 -3.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02560 -4.5 -2.0 23S rRNA methyltransferase compare
PS417_21125 -4.3 -6.6 phosphoadenosine phosphosulfate reductase compare
PS417_21515 -4.3 -11.1 transcriptional regulator compare
PS417_00755 -4.2 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_27245 -4.2 -4.1 aminotransferase DegT compare
PS417_27135 -4.1 -0.9 glutamine synthetase compare
PS417_24835 -4.0 -4.3 hypothetical protein compare
PS417_21480 -4.0 -1.6 23S rRNA pseudouridylate synthase compare
PS417_04275 -4.0 -15.9 hypothetical protein compare
PS417_23915 -4.0 -4.7 pantoate--beta-alanine ligase compare
PS417_27795 -4.0 -0.9 orotate phosphoribosyltransferase compare
PS417_13820 -4.0 -6.5 UDP-glucose 6-dehydrogenase compare
PS417_02485 -3.9 -5.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06375 -3.8 -0.9 deoxycytidine triphosphate deaminase compare
PS417_14945 -3.7 -5.6 beta-lactamase compare
PS417_14965 -3.6 -5.5 transcriptional regulator conserved
PS417_01915 -3.5 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20610 -3.5 -1.1 hypothetical protein compare
PS417_00370 -3.5 -1.1 hypothetical protein compare
PS417_27195 -3.4 -1.1 N-acetylglutamate synthase compare
PS417_07620 -3.2 -1.3 beta-hexosaminidase compare
PS417_24745 -3.2 -2.7 gamma-glutamyl phosphate reductase compare
PS417_13065 -3.2 -6.4 UDP pyrophosphate phosphatase compare
PS417_25650 -3.1 -3.6 anhydro-N-acetylmuramic acid kinase compare
PS417_06245 -3.1 -1.9 zinc metallopeptidase RseP compare
PS417_16555 -3.1 -1.4 cupin compare
PS417_13790 -3.0 -4.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_22815 -3.0 -7.5 permease compare
PS417_11705 -3.0 -8.0 cyclic peptide transporter compare
PS417_21655 -2.9 -0.9 aspartate kinase compare
PS417_09210 -2.9 -1.6 TetR family transcriptional regulator compare
PS417_08125 -2.8 -0.6 prephenate dehydratase compare
PS417_20705 -2.8 -4.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_28050 -2.8 -3.5 hypothetical protein compare
PS417_22535 -2.8 -6.5 ornithine acetyltransferase compare
PS417_05595 -2.7 -6.9 ornithine carbamoyltransferase compare
PS417_03260 -2.7 -0.8 5S ribosomal RNA compare
PS417_20160 -2.6 -3.5 cysteine synthase compare
PS417_21000 -2.5 -1.6 CrfX protein compare
PS417_22445 -2.5 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_26985 -2.4 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26605 -2.3 -1.0 malonate decarboxylase subunit beta compare
PS417_24615 -2.3 -1.0 hypothetical protein compare
PS417_15095 -2.3 -3.2 hypothetical protein compare
PS417_00510 -2.3 -1.0 membrane protein compare
PS417_04650 -2.3 -1.0 D-alanine--D-alanine ligase compare
PS417_03560 -2.3 -1.4 GTP-binding protein compare
PS417_07120 -2.3 -5.4 RNA polymerase sigma-H factor compare
PS417_26990 -2.3 -0.7 RNA pyrophosphohydrolase compare
PS417_23770 -2.3 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_05510 -2.3 -4.1 alpha/beta hydrolase compare
PS417_13755 -2.2 -3.0 oxidoreductase compare
PS417_22210 -2.2 -1.5 AraC family transcriptional regulator compare
PS417_08025 -2.2 -1.4 acetylornithine aminotransferase compare
PS417_00345 -2.2 -2.0 copper-binding protein compare
PS417_24115 -2.1 -1.5 hypothetical protein compare
PS417_22840 -2.1 -1.6 tRNA-Met compare
PS417_02145 -2.1 -6.0 potassium transporter KefA compare
PS417_06025 -2.1 -2.7 alpha/beta hydrolase compare
PS417_27585 -2.1 -1.6 diaminopimelate epimerase compare
PS417_22060 -2.0 -1.3 hypothetical protein compare
PS417_25790 -2.0 -2.5 aminoglycoside phosphotransferase compare
PS417_25645 -2.0 -3.0 peptidase M23 compare
PS417_23025 -2.0 -5.0 murein transglycosylase compare
PS417_02475 -2.0 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_08685 -2.0 -0.9 flagellar hook-length control protein FliK compare
PS417_27040 -2.0 -2.1 3-phosphoglycerate dehydrogenase compare
PS417_23995 -1.9 -0.7 preprotein translocase subunit SecG compare
PS417_20930 -1.9 -7.0 50S rRNA methyltransferase compare
PS417_22570 -1.9 -0.7 H-NS histone compare
PS417_19955 -1.8 -1.5 hypothetical protein compare
PS417_12585 -1.8 -6.2 acriflavine resistance protein B compare
PS417_13185 -1.8 -2.1 RND transporter compare
PS417_12245 -1.8 -2.3 GNAT family acetyltransferase compare
PS417_05160 -1.8 -1.0 DNA polymerase III subunit chi compare
PS417_16715 -1.8 -1.4 DoxX family protein compare
PS417_25120 -1.8 -4.9 capsular biosynthesis protein compare
PS417_27340 -1.8 -3.3 NADPH:quinone oxidoreductase compare
PS417_10245 -1.7 -1.4 hypothetical protein compare
PS417_13785 -1.7 -2.4 hypothetical protein compare
PS417_23545 -1.7 -1.3 gamma-glutamyl kinase compare
PS417_26730 -1.7 -0.5 pyrroline-5-carboxylate reductase compare
PS417_08205 -1.6 -2.7 acetyltransferase compare
PS417_03515 -1.6 -1.5 type III secretion protein compare
PS417_20715 -1.6 -1.9 cytochrome Cbb3 compare
PS417_07170 -1.6 -2.7 hypothetical protein compare
PS417_02975 -1.6 -4.3 3-dehydroquinate dehydratase compare
PS417_01145 -1.6 -0.8 taurine transporter ATP-binding subunit compare
PS417_08225 -1.6 -3.4 acetolactate synthase compare
PS417_08195 -1.5 -5.3 hypothetical protein compare
PS417_21510 -1.5 -1.2 histidine kinase compare
PS417_27290 -1.5 -1.4 hypothetical protein compare
PS417_14755 -1.5 -1.7 UV damage repair endonuclease UvdE compare
PS417_01605 -1.5 -1.2 phosphoglycerate mutase compare
PS417_03000 -1.5 -2.3 translation initiation factor Sui1 compare
PS417_02255 -1.5 -2.1 lipopolysaccharide kinase compare
PS417_04220 -1.5 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_16510 -1.5 -2.1 Clp protease ClpX compare
PS417_21695 -1.4 -2.3 succinylglutamate-semialdehyde dehydrogenase compare
PS417_26335 -1.4 -2.0 BetI family transcriptional regulator compare
PS417_09245 -1.4 -1.3 recombinase RdgC compare
PS417_03005 -1.4 -4.5 arginine decarboxylase compare
PS417_24500 -1.4 -2.3 DEAD/DEAH box helicase compare
PS417_10680 -1.4 -2.7 enoyl-CoA hydratase compare
PS417_02150 -1.4 -4.6 potassium/proton antiporter compare
PS417_24125 -1.4 -3.1 hypothetical protein compare
PS417_10405 -1.4 -0.9 filamentous hemagglutinin compare
PS417_02175 -1.4 -2.1 transcriptional regulator compare
PS417_22250 -1.4 -3.9 pseudouridine synthase compare
PS417_02805 -1.4 -1.4 urease subunit gamma compare
PS417_27435 -1.4 -5.0 polyphosphate kinase compare
PS417_09020 -1.3 -3.4 esterase compare
PS417_17470 -1.3 -1.5 LuxR family transcriptional regulator compare
PS417_01030 -1.3 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_27595 -1.3 -1.9 recombinase XerC compare
PS417_13735 -1.3 -1.1 hypothetical protein compare
PS417_15770 -1.3 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_01620 -1.3 -1.8 preprotein translocase subunit SecB compare
PS417_09865 -1.3 -1.4 hypothetical protein compare
PS417_22850 -1.3 -2.6 virulence factor family protein compare
PS417_02885 -1.3 -1.2 hypothetical protein compare
PS417_00030 -1.3 -3.2 hypothetical protein compare
PS417_20650 -1.3 -5.7 hypothetical protein compare
PS417_24030 -1.3 -1.8 MFS transporter compare
PS417_08540 -1.3 -1.4 RNA helicase compare
PS417_09730 -1.3 -1.7 adenylylsulfate kinase compare
PS417_13780 -1.3 -4.0 integrase compare
PS417_07035 -1.3 -4.9 uracil-DNA glycosylase compare
PS417_20855 -1.3 -0.8 hypothetical protein compare
PS417_10995 -1.3 -2.0 GntR family transcriptional regulator compare
PS417_08000 -1.2 -4.7 beta-hydroxylase compare
PS417_21710 -1.2 -2.7 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_22380 -1.2 -3.0 hypothetical protein compare
PS417_21760 -1.2 -1.1 hypothetical protein compare
PS417_16490 -1.2 -0.9 cell division protein FtsK compare
PS417_23380 -1.2 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_27705 -1.2 -1.0 amino acid dehydrogenase compare
PS417_19425 -1.2 -0.6 allantoicase compare
PS417_12870 -1.2 -1.2 enoyl-CoA hydratase compare
PS417_01630 -1.2 -1.3 hypothetical protein compare
PS417_16520 -1.2 -1.3 cold-shock protein compare
PS417_04685 -1.2 -2.6 histidine kinase compare
PS417_01715 -1.2 -0.9 hypothetical protein compare
PS417_02720 -1.2 -0.7 TetR family transcriptional regulator compare
PS417_23215 -1.2 -2.9 RNA methyltransferase compare
PS417_21830 -1.2 -2.5 TetR family transcriptional regulator compare
PS417_15135 -1.2 -0.8 hypothetical protein compare
PS417_02950 -1.2 -2.3 tRNA-dihydrouridine synthase B compare
PS417_10060 -1.2 -1.4 hypothetical protein compare
PS417_15105 -1.2 -4.0 membrane protein compare
PS417_18710 -1.2 -3.6 hypothetical protein compare
PS417_00180 -1.1 -1.2 tryptophan synthase subunit alpha compare
PS417_02770 -1.1 -1.9 membrane protein compare
PS417_16825 -1.1 -2.2 membrane protein compare
PS417_01635 -1.1 -2.3 nitrogen regulation protein NR(I) compare
PS417_27520 -1.1 -1.7 uroporphyrin-III methyltransferase compare
PS417_16515 -1.1 -1.6 Clp protease ClpS compare
PS417_12380 -1.1 -3.9 peptidase S54 compare
PS417_03705 -1.1 -3.1 2-alkenal reductase compare
PS417_18310 -1.1 -0.6 hypothetical protein compare
PS417_00045 -1.1 -1.2 glycerol acyltransferase compare
PS417_20755 -1.1 -1.8 membrane protein compare
PS417_15400 -1.1 -1.0 hypothetical protein compare
PS417_06370 -1.1 -0.9 cold-shock protein compare
PS417_18635 -1.1 -2.2 4-hydroxybenzoyl-CoA thioesterase compare
PS417_24525 -1.1 -1.0 nuclease compare
PS417_00810 -1.1 -1.0 RNA polymerase sigma factor compare
PS417_11175 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_04380 -1.1 -0.6 ABC transporter permease compare
PS417_19610 -1.1 -1.6 molybdenum cofactor sulfurase compare
PS417_26340 -1.1 -3.3 betaine-aldehyde dehydrogenase compare
PS417_05910 -1.1 -4.8 glucan biosynthesis protein D compare
PS417_02405 -1.1 -2.2 hypothetical protein compare
PS417_09045 -1.1 -1.9 histidine kinase compare
PS417_06540 -1.1 -1.0 membrane protein compare
PS417_19350 -1.1 -1.7 GTP cyclohydrolase compare
PS417_24230 -1.0 -3.6 ATP-dependent protease compare
PS417_19605 -1.0 -0.9 hypothetical protein compare
PS417_05505 -1.0 -2.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_27800 -1.0 -0.7 exodeoxyribonuclease III compare
PS417_13870 -1.0 -2.1 hypothetical protein compare
PS417_18425 -1.0 -1.1 sporulation protein compare
PS417_08740 -1.0 -1.4 ribose-phosphate pyrophosphokinase compare
PS417_12660 -1.0 -1.3 hypothetical protein compare
PS417_14535 -1.0 -2.9 alpha/beta hydrolase compare
PS417_05570 -1.0 -2.4 DeoR faimly transcriptional regulator compare
PS417_15305 -1.0 -2.1 type VI secretion protein compare
PS417_17125 -1.0 -1.8 transcriptional regulator compare
PS417_09035 -1.0 -2.3 hypothetical protein compare
PS417_03935 -1.0 -1.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_14985 -1.0 -2.3 Fe-S protein compare
PS417_09505 -1.0 -1.8 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms