Experiment set22IT089 for Pseudomonas putida KT2440

Compare to:

Growth at 10C

200 most detrimental genes:

  gene name fitness t score description  
PP_5328 +1.1 2.9 putative phosphate transport system permease protein compare
PP_4561 +1.1 2.1 stress response protein compare
PP_1410 +0.9 1.5 conserved protein of unknown function compare
PP_2121 +0.8 2.5 putative Lipoprotein compare
PP_3916 +0.8 1.8 conserved protein of unknown function compare
PP_1142 +0.8 1.5 conserved protein of unknown function compare
PP_1716 +0.8 2.5 Transcriptional regulator, Cro/CI family compare
PP_4797 +0.8 2.1 conserved protein of unknown function compare
PP_2568 +0.8 1.6 Ring-cleaving dioxygenase compare
PP_5327 +0.7 2.8 putative phosphate ABC transporter, permease subunit compare
PP_1824 +0.7 1.7 Smr domain protein compare
PP_1176 +0.7 2.1 conserved protein of unknown function compare
PP_4273 +0.7 0.9 Transcriptional regulator, MerR family compare
PP_3926 +0.7 1.9 short-chain dehydrogenase compare
PP_1186 +0.7 1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4342 +0.7 2.0 flagellar synthesis regulator, putative ATPase compare
PP_2503 +0.7 2.0 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_4094 +0.7 1.6 conserved protein of unknown function compare
PP_3043 +0.7 2.4 conserved protein of unknown function compare
PP_2847 +0.7 1.6 Urease accessory protein UreJ compare
PP_4136 +0.7 1.4 Transcriptional regulator, LuxR family compare
PP_0921 +0.7 2.7 Transcriptional regulator, ArsR family compare
PP_5073 +0.7 2.2 conserved exported protein of unknown function compare
PP_1096 +0.6 1.1 putative electron transport complex protein compare
PP_2824 +0.6 2.7 Transcriptional regulator, TetR family compare
PP_3874 +0.6 2.1 conserved protein of unknown function compare
PP_3190 +0.6 2.6 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_3519 +0.6 1.1 putative Lipoprotein compare
PP_5475 +0.6 1.0 conserved protein of unknown function compare
PP_3541 +0.6 1.6 Transporter, MgtC family compare
PP_3098 +0.6 1.1 conserved protein of unknown function compare
PP_4196 +0.6 2.0 conserved exported protein of unknown function compare
PP_1864 +0.6 2.6 conserved protein of unknown function compare
PP_5604 +0.6 1.5 putative subtilisin-like serine protease compare
PP_4223 +0.6 2.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1062 +0.6 1.0 MutT/nudix family protein compare
PP_4681 +0.6 3.1 conserved protein of unknown function compare
PP_1683 +0.6 2.1 Transcriptional regulator, MarR family compare
PP_3938 +0.6 1.9 conserved protein of unknown function compare
PP_5528 +0.6 1.5 conserved protein of unknown function compare
PP_3989 +0.6 2.8 DNA-cytosine methyltransferase compare
PP_4247 +0.6 0.6 Exonuclease compare
PP_4997 +0.6 1.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3194 +0.6 3.2 conserved protein of unknown function compare
PP_5224 +0.6 2.5 conserved protein of unknown function compare
PP_0022 +0.6 1.1 hypothetical protein compare
PP_3902 +0.6 2.2 conserved protein of unknown function compare
PP_2794 +0.6 0.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0250 +0.6 1.6 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4008 +0.5 3.1 ATP-dependent serine protease compare
PP_1319 +0.5 2.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5705 +0.5 1.5 protein of unknown function compare
PP_3551 +0.5 1.4 DNA-binding response regulator, LuxR family compare
PP_3365 +0.5 1.0 Acetolactate synthase compare
PP_0321 +0.5 3.2 low specificity L-threonine aldolase compare
PP_3726 +0.5 0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_1000 +0.5 2.3 ornithine carbamoyltransferase, catabolic compare
PP_2716 +0.5 1.4 arsenate reductase compare
PP_2960 +0.5 2.0 transcriptional regulator, AraC family compare
PP_4066 +0.5 1.3 methylglutaconyl-CoA hydratase compare
PP_2724 +0.5 2.4 conserved protein of unknown function compare
PP_3685 +0.5 2.1 conserved protein of unknown function compare
PP_0113 +0.5 2.2 methionine ABC transporter, permease protein compare
PP_0846 +0.5 0.5 DnaK-like molecular chaperone specific for IscU compare
PP_2764 +0.5 2.3 FMN reductase (NADPH) compare
PP_3258 +0.5 1.9 conserved protein of unknown function compare
PP_5253 +0.5 1.4 Arylesterase compare
PP_0137 +0.5 3.1 glutamate/aspartate-proton DAACS transporter compare
PP_0804 +0.5 3.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3892 +0.5 1.0 conserved protein of unknown function compare
PP_5143 +0.5 1.6 conserved membrane protein of unknown function compare
PP_1575 +0.5 1.4 conserved protein of unknown function compare
PP_5654 +0.5 1.4 putative phosphotriesterase compare
PP_2595 +0.5 2.0 putative ABC transporter, permease/ATP-binding protein compare
PP_5017 +0.5 0.9 Sec-independent protein translocase protein TatB compare
PP_1207 +0.5 1.8 conserved protein of unknown function compare
PP_3647 +0.5 1.5 putative Oxidoreductase compare
PP_4836 +0.5 2.3 conserved exported protein of unknown function compare
PP_3679 +0.4 1.9 conserved protein of unknown function compare
PP_2695 +0.4 1.8 Transcriptional regulator, LysR family compare
PP_0896 +0.4 2.4 Carbon-nitrogen hydrolase family protein compare
PP_0676 +0.4 2.3 putative Transcription elongation factor compare
PP_3903 +0.4 1.2 conserved protein of unknown function compare
PP_3640 +0.4 1.8 Transcriptional regulator, AraC family compare
PP_3315 +0.4 1.9 conserved membrane protein of unknown function compare
PP_2319 +0.4 1.6 conserved protein of unknown function compare
PP_5594 +0.4 1.4 conserved protein of unknown function compare
PP_1706 +0.4 1.5 Nitrite reductase compare
PP_1709 +0.4 1.4 Fumarylacetoacetate hydrolase family protein compare
PP_2247 +0.4 1.3 putative Endoribonuclease compare
PP_4808 +0.4 1.6 23S rRNA m3psi1915 methyltransferase compare
PP_5486 +0.4 1.3 conserved protein of unknown function compare
PP_2311 +0.4 2.3 Mg-dependent cytoplasmic DNase / RNase compare
PP_3524 +0.4 2.3 conserved protein of unknown function compare
PP_2290 +0.4 1.4 conserved protein of unknown function compare
PP_1813 +0.4 1.4 ComEA-related protein compare
PP_4844 +0.4 2.2 putative Urea ABC transporter, ATP-binding protein compare
PP_3930 +0.4 1.3 conserved exported protein of unknown function compare
PP_1300 +0.4 1.8 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0887 +0.4 2.5 Sensor histidine kinase compare
PP_5689 +0.4 2.4 conserved protein of unknown function compare
PP_5712 +0.4 1.7 conserved protein of unknown function compare
PP_3201 +0.4 1.3 BNR domain protein compare
PP_0235 +0.4 1.9 Peroxidase compare
PP_2619 +0.4 1.7 FHA domain protein compare
PP_2758 +0.4 2.6 putative Ribose ABC transporter, periplasmic ribose-binding protein compare
PP_4946 +0.4 2.7 sodium/L-proline transporter compare
PP_1513 +0.4 1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_2408 +0.4 2.0 cobalt-zinc-cadmium resistance protein compare
PP_0801 +0.4 0.8 conserved exported protein of unknown function compare
PP_4839 +0.4 3.0 putative iron-regulated membrane protein compare
PP_2715 +0.4 1.7 ArsH protein compare
PP_4814 +0.4 1.2 ATP-dependent protease La domain protein compare
PP_2633 +0.4 1.0 conserved protein of unknown function compare
PP_4978 +0.4 2.7 conserved protein of unknown function compare
PP_4690 +0.4 1.3 Rieske 2Fe-2S family protein compare
PP_1169 +0.4 2.1 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) compare
PP_3073 +0.4 1.6 3-hydroxybutyrate dehydrogenase compare
PP_5329 +0.4 1.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5494 +0.4 2.4 protein of unknown function compare
PP_1038 +0.4 1.0 conserved protein of unknown function compare
PP_4482 +0.4 1.3 Transcriptional regulator, AraC family compare
PP_5583 +0.4 0.9 conserved protein of unknown function compare
PP_1455 +0.4 1.8 conserved protein of unknown function compare
PP_1646 +0.4 1.4 putative Thioredoxin compare
PP_0440 +0.4 1.3 Elongation factor Tu-A compare
PP_4849 +0.4 2.1 putative DnaK protein compare
PP_2412 +0.4 1.9 ParA family protein compare
PP_5666 +0.4 1.4 putative microcin B17-like processing protein, McbB family compare
PP_4887 +0.4 1.8 conserved protein of unknown function compare
PP_2762 +0.4 2.1 acyl-CoA dehydrogenase/oxidase family protein compare
PP_1417 +0.4 2.1 putative Tricarboxylate transport protein TctB compare
PP_4760 +0.4 1.8 Alcohol dehydrogenase, zinc-containing compare
PP_5675 +0.4 1.5 conserved protein of unknown function compare
PP_1730 +0.4 2.0 Probable M18 family aminopeptidase 2 compare
PP_3392 +0.4 1.0 conserved protein of unknown function compare
PP_3754 +0.4 2.0 Beta-ketothiolase BktB compare
PP_3398 +0.4 0.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_t57 +0.4 1.1 tRNA-Arg compare
PP_0512 +0.4 1.1 hypothetical protein compare
PP_2858 +0.3 1.3 conserved exported protein of unknown function compare
PP_4923 +0.3 2.6 Outer membrane efflux protein compare
PP_0211 +0.3 1.6 conserved protein of unknown function compare
PP_2401 +0.3 1.7 conserved membrane protein of unknown function compare
PP_3803 +0.3 1.7 putative Cation ABC transporter, permease protein compare
PP_5337 +0.3 1.9 LysR family transcriptional regulator compare
PP_4527 +0.3 2.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3756 +0.3 1.4 TetR family transcriptional regulator compare
PP_4957 +0.3 1.5 conserved protein of unknown function compare
PP_1788 +0.3 1.5 conserved protein of unknown function compare
PP_1164 +0.3 1.0 Transcriptional regulator, LysR family compare
PP_2497 +0.3 1.0 conserved protein of unknown function compare
PP_3143 +0.3 2.0 Transcriptional regulator, LysR family compare
PP_2077 +0.3 1.6 diaminopimelate decarboxylase compare
PP_1442 +0.3 1.0 conserved protein of unknown function compare
PP_2907 +0.3 1.0 DNA-binding response regulator compare
PP_1718 +0.3 1.8 putative diguanylate phosphodiesterase containing EAL domain compare
PP_2864 +0.3 1.0 conserved protein of unknown function compare
PP_1907 +0.3 1.6 Hydrolase, haloacid dehalogenase-like family compare
PP_5500 +0.3 1.2 protein of unknown function compare
PP_5489 +0.3 1.5 conserved protein of unknown function compare
PP_2950 +0.3 1.5 conserved protein of unknown function compare
PP_3367 +0.3 2.1 conserved protein of unknown function compare
PP_3766 +0.3 1.1 Lactoylglutathione lyase compare
PP_4251 +0.3 1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_1489 +0.3 1.1 CheW domain protein compare
PP_5167 +0.3 1.0 conserved hypothetical protein compare
PP_0306 +0.3 0.8 conserved protein of unknown function compare
PP_3882 +0.3 2.1 putative Phage terminase, small subunit compare
PP_3773 +0.3 0.6 conserved protein of unknown function compare
PP_1713 +0.3 0.7 Transcriptional regulator PcaQ compare
PP_2452 +0.3 1.8 conserved protein of unknown function compare
PP_0333 +0.3 1.7 conserved exported protein of unknown function compare
PP_2379 +0.3 1.5 putative cytochrome oxidase biogenesis protein compare
PP_4600 +0.3 1.9 molybdenum cofactor biosynthesis protein B compare
PP_0998 +0.3 1.9 conserved protein of unknown function compare
PP_0900 +0.3 0.9 PAP2 family protein compare
PP_3050 +0.3 1.6 conserved protein of unknown function compare
PP_2749 +0.3 1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2768 +0.3 1.2 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0274 +0.3 0.3 putative transcriptional regulator containing HTH domain compare
PP_0892 +0.3 2.2 Phospholipase family protein compare
PP_4483 +0.3 2.0 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_3539 +0.3 1.3 putative Transcriptional regulator compare
PP_3332 +0.3 1.2 putative cytochrome c-type protein compare
PP_4104 +0.3 1.7 Glutathione S-transferase family protein compare
PP_2873 +0.3 1.4 conserved protein of unknown function, UPF0145 family compare
PP_2232 +0.3 1.4 XRE family transcriptional regulator compare
PP_5499 +0.3 1.1 conserved protein of unknown function compare
PP_3096 +0.3 2.1 conserved protein of unknown function compare
PP_2863 +0.3 1.0 conserved membrane protein of unknown function compare
PP_2403 +0.3 0.7 Chemotaxis protein CheY compare
PP_2723 +0.3 1.1 Uncharacterized oxidoreductase YhdF compare
PP_4164 +0.3 1.6 Alpha/beta hydrolase compare
PP_1791 +0.3 2.6 putative Aldolase/synthase compare
PP_3337 +0.3 1.2 conserved membrane protein of unknown function compare
PP_2137 +0.3 1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_5032 +0.3 1.9 Histidine ammonia-lyase compare
PP_3207 +0.3 2.0 putative Cyclase compare
PP_5580 +0.3 0.6 protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For temperature D-Glucose in Pseudomonas putida KT2440

For temperature D-Glucose across organisms