Experiment set22IT088 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -7.0 -5.7 hypothetical protein compare
PS417_11825 -5.6 -2.6 transcriptional regulator compare
PS417_13800 -5.4 -3.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26985 -5.4 -8.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14065 -5.0 -11.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_14945 -4.6 -7.2 beta-lactamase conserved
PS417_13820 -4.6 -7.5 UDP-glucose 6-dehydrogenase compare
PS417_21515 -4.5 -18.4 transcriptional regulator compare
PS417_14960 -4.3 -10.2 ATPase conserved
PS417_21480 -4.0 -1.6 23S rRNA pseudouridylate synthase compare
PS417_21125 -3.9 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_06375 -3.8 -0.9 deoxycytidine triphosphate deaminase compare
PS417_02485 -3.7 -3.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13795 -3.6 -6.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07620 -3.5 -1.0 beta-hexosaminidase compare
PS417_14965 -3.5 -3.8 transcriptional regulator conserved
PS417_06945 -3.5 -1.1 membrane protein compare
PS417_04275 -3.5 -12.7 hypothetical protein compare
PS417_22815 -3.4 -9.2 permease compare
PS417_27195 -3.4 -1.1 N-acetylglutamate synthase compare
PS417_13805 -3.4 -9.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21510 -3.2 -2.0 histidine kinase compare
PS417_05595 -3.2 -8.0 ornithine carbamoyltransferase compare
PS417_07120 -3.2 -6.7 RNA polymerase sigma-H factor compare
PS417_01605 -3.0 -1.4 phosphoglycerate mutase compare
PS417_25650 -2.9 -3.8 anhydro-N-acetylmuramic acid kinase compare
PS417_08125 -2.8 -0.6 prephenate dehydratase compare
PS417_02560 -2.8 -1.9 23S rRNA methyltransferase compare
PS417_02880 -2.8 -0.8 copper chaperone compare
PS417_03260 -2.8 -0.8 5S ribosomal RNA compare
PS417_04475 -2.7 -4.0 hypothetical protein compare
PS417_11705 -2.7 -5.6 cyclic peptide transporter compare
PS417_08620 -2.7 -1.0 hypothetical protein compare
PS417_05505 -2.6 -6.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22850 -2.6 -8.4 virulence factor family protein compare
PS417_02980 -2.6 -1.1 chemotaxis protein compare
PS417_23915 -2.6 -3.6 pantoate--beta-alanine ligase compare
PS417_22565 -2.6 -0.8 formyltetrahydrofolate deformylase compare
PS417_18310 -2.5 -1.4 hypothetical protein compare
PS417_27245 -2.5 -3.4 aminotransferase DegT compare
PS417_13065 -2.4 -4.6 UDP pyrophosphate phosphatase compare
PS417_12585 -2.4 -8.4 acriflavine resistance protein B compare
PS417_25790 -2.3 -3.4 aminoglycoside phosphotransferase compare
PS417_20610 -2.3 -1.3 hypothetical protein compare
PS417_13790 -2.3 -3.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_24705 -2.3 -2.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_03560 -2.3 -1.4 GTP-binding protein compare
PS417_26990 -2.3 -0.7 RNA pyrophosphohydrolase compare
PS417_22840 -2.2 -1.2 tRNA-Met compare
PS417_24500 -2.2 -3.6 DEAD/DEAH box helicase compare
PS417_27155 -2.2 -1.5 aliphatic sulfonates transport ATP-binding subunit compare
PS417_02225 -2.2 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02145 -2.1 -7.4 potassium transporter KefA compare
PS417_02870 -2.1 -5.8 TonB-dependent receptor compare
PS417_20930 -2.1 -6.5 50S rRNA methyltransferase compare
PS417_08230 -2.1 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16555 -2.0 -1.4 cupin compare
PS417_15975 -2.0 -1.5 glutamate carboxypeptidase compare
PS417_00755 -2.0 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_04220 -1.9 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_08410 -1.9 -1.8 hypothetical protein compare
PS417_27865 -1.9 -2.1 LysR family transcriptional regulator compare
PS417_06245 -1.9 -1.4 zinc metallopeptidase RseP compare
PS417_02975 -1.9 -4.5 3-dehydroquinate dehydratase compare
PS417_22535 -1.9 -4.6 ornithine acetyltransferase compare
PS417_05510 -1.9 -3.8 alpha/beta hydrolase compare
PS417_22570 -1.9 -0.7 H-NS histone compare
PS417_19350 -1.9 -3.7 GTP cyclohydrolase compare
PS417_02865 -1.8 -2.9 peptidase compare
PS417_22450 -1.8 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_20160 -1.8 -2.2 cysteine synthase compare
PS417_20785 -1.8 -2.0 transcriptional regulator compare
PS417_03705 -1.8 -3.1 2-alkenal reductase compare
PS417_08365 -1.8 -0.8 hypothetical protein compare
PS417_20880 -1.8 -2.2 GntR family transcriptional regulator compare
PS417_27795 -1.7 -0.7 orotate phosphoribosyltransferase compare
PS417_18455 -1.7 -2.1 hypothetical protein compare
PS417_13205 -1.7 -1.9 isochorismate-pyruvate lyase compare
PS417_22445 -1.7 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_05525 -1.7 -2.8 Fis family transcriptional regulator compare
PS417_01290 -1.7 -1.2 ADP-ribose diphosphatase compare
PS417_25645 -1.7 -4.1 peptidase M23 compare
PS417_24615 -1.7 -1.0 hypothetical protein compare
PS417_26730 -1.7 -0.5 pyrroline-5-carboxylate reductase compare
PS417_07560 -1.7 -1.4 universal stress protein UspA compare
PS417_20705 -1.6 -3.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_02405 -1.6 -4.9 hypothetical protein compare
PS417_22060 -1.6 -0.7 hypothetical protein compare
PS417_20855 -1.6 -1.0 hypothetical protein compare
PS417_05650 -1.6 -3.2 leucyl-tRNA synthetase compare
PS417_26370 -1.6 -2.6 RNA helicase compare
PS417_07035 -1.6 -5.4 uracil-DNA glycosylase compare
PS417_24235 -1.5 -2.3 hypothetical protein compare
PS417_22690 -1.5 -2.2 phosphogluconate dehydratase compare
PS417_02950 -1.5 -2.6 tRNA-dihydrouridine synthase B compare
PS417_22780 -1.5 -1.9 XRE family transcriptional regulator compare
PS417_27435 -1.5 -5.5 polyphosphate kinase compare
PS417_16510 -1.5 -1.8 Clp protease ClpX compare
PS417_27870 -1.5 -2.3 ATP-dependent DNA helicase RecG compare
PS417_03815 -1.5 -2.0 DNA transporter compare
PS417_22810 -1.4 -1.4 DNA base-flipping protein YbaZ compare
PS417_08000 -1.4 -5.1 beta-hydroxylase compare
PS417_18055 -1.4 -0.7 general secretion pathway protein GspK compare
PS417_26760 -1.4 -6.0 oxidase compare
PS417_20650 -1.4 -5.0 hypothetical protein compare
PS417_21430 -1.4 -1.3 3-oxoacyl-ACP synthase compare
PS417_24575 -1.4 -0.9 hypothetical protein compare
PS417_06335 -1.4 -1.3 S-formylglutathione hydrolase compare
PS417_02555 -1.3 -8.0 exoribonuclease R compare
PS417_02475 -1.3 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_05820 -1.3 -1.4 recombinase RecX compare
PS417_02365 -1.3 -2.6 hypothetical protein compare
PS417_02150 -1.3 -4.1 potassium/proton antiporter compare
PS417_14280 -1.3 -1.9 hypothetical protein compare
PS417_20080 -1.3 -1.7 peptidase P60 compare
PS417_23770 -1.3 -1.2 exodeoxyribonuclease V subunit alpha compare
PS417_00045 -1.3 -1.4 glycerol acyltransferase compare
PS417_24230 -1.3 -4.0 ATP-dependent protease compare
PS417_15465 -1.3 -2.2 carboxynorspermidine decarboxylase compare
PS417_16520 -1.3 -1.4 cold-shock protein compare
PS417_16490 -1.3 -1.0 cell division protein FtsK compare
PS417_23025 -1.3 -2.2 murein transglycosylase compare
PS417_15085 -1.3 -3.3 ATPase AAA compare
PS417_08195 -1.3 -4.6 hypothetical protein compare
PS417_01340 -1.3 -3.7 agmatine deiminase compare
PS417_24745 -1.3 -1.5 gamma-glutamyl phosphate reductase compare
PS417_08025 -1.3 -1.2 acetylornithine aminotransferase compare
PS417_17565 -1.2 -1.6 branched-chain amino acid aminotransferase compare
PS417_11060 -1.2 -2.4 transporter compare
PS417_28050 -1.2 -1.3 hypothetical protein compare
PS417_01915 -1.2 -0.5 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03300 -1.2 -2.6 alanine acetyltransferase compare
PS417_16515 -1.2 -1.9 Clp protease ClpS compare
PS417_06885 -1.2 -3.0 dihydrodipicolinate synthase compare
PS417_26220 -1.2 -1.8 Rieske (2Fe-2S) protein compare
PS417_15225 -1.2 -2.9 alpha/beta hydrolase compare
PS417_25700 -1.2 -1.7 cyclic AMP receptor protein compare
PS417_12520 -1.2 -1.9 hypothetical protein compare
PS417_24620 -1.2 -1.5 hypothetical protein compare
PS417_20170 -1.2 -2.7 hypothetical protein compare
PS417_24800 -1.1 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_26335 -1.1 -1.7 BetI family transcriptional regulator compare
PS417_03005 -1.1 -4.4 arginine decarboxylase compare
PS417_15475 -1.1 -2.6 IclR family transcriptional regulator compare
PS417_04410 -1.1 -1.2 hypothetical protein compare
PS417_04025 -1.1 -2.1 glycine/betaine ABC transporter permease compare
PS417_27585 -1.1 -1.3 diaminopimelate epimerase compare
PS417_20715 -1.1 -1.5 cytochrome Cbb3 compare
PS417_06620 -1.1 -1.2 hypothetical protein compare
PS417_00175 -1.1 -0.8 CigR compare
PS417_14940 -1.1 -1.2 LysR family transcriptional regulator compare
PS417_03685 -1.1 -1.3 FAD-dependent oxidoreductase compare
PS417_01300 -1.1 -2.2 thioesterase compare
PS417_11865 -1.1 -1.8 xylose isomerase compare
PS417_27125 -1.1 -3.8 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_05140 -1.1 -1.2 dipicolinate synthase compare
PS417_26340 -1.1 -3.2 betaine-aldehyde dehydrogenase compare
PS417_20030 -1.1 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_03935 -1.1 -1.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_22210 -1.1 -1.3 AraC family transcriptional regulator compare
PS417_03000 -1.1 -2.4 translation initiation factor Sui1 compare
PS417_20245 -1.1 -2.4 copper resistance protein CopD compare
PS417_18450 -1.0 -1.9 hydrolase compare
PS417_00085 -1.0 -1.0 16S rRNA methyltransferase compare
PS417_10405 -1.0 -0.8 filamentous hemagglutinin compare
PS417_17215 -1.0 -1.9 peptidylprolyl isomerase compare
PS417_07165 -1.0 -2.1 dihydrodipicolinate synthase compare
PS417_00900 -1.0 -1.4 4-aminobutyrate aminotransferase compare
PS417_02890 -1.0 -1.8 cobalt-precorrin-6X reductase compare
PS417_23385 -1.0 -5.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23310 -1.0 -2.3 glyoxalase compare
PS417_12565 -1.0 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_07820 -1.0 -1.5 transposase compare
PS417_12260 -1.0 -1.6 hypothetical protein compare
PS417_12710 -1.0 -2.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_02915 -1.0 -2.0 precorrin-3B C17-methyltransferase compare
PS417_18630 -1.0 -1.7 tRNA-dihydrouridine synthase C compare
PS417_21680 -1.0 -1.8 succinylglutamate desuccinylase compare
PS417_24715 -1.0 -3.7 lytic transglycosylase compare
PS417_22875 -1.0 -1.3 hypothetical protein compare
PS417_22845 -1.0 -6.8 membrane protein compare
PS417_28080 -1.0 -6.6 phosphate ABC transporter permease compare
PS417_00405 -1.0 -3.9 DNA polymerase I compare
PS417_21870 -1.0 -1.8 glycerophosphodiester phosphodiesterase compare
PS417_23775 -1.0 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_06735 -1.0 -1.5 3-oxoadipate enol-lactonase compare
PS417_01145 -1.0 -0.6 taurine transporter ATP-binding subunit compare
PS417_06780 -1.0 -2.1 TetR family transcriptional regulator compare
PS417_27115 -1.0 -3.7 putrescine ABC transporter, ATPase component (from data) compare
PS417_21700 -1.0 -2.1 arginine N-succinyltransferase compare
PS417_27110 -1.0 -1.9 spermidine/putrescine ABC transporter permease compare
PS417_28185 -1.0 -1.9 homocysteine methyltransferase compare
PS417_20875 -1.0 -1.9 chromosome segregation protein SMC compare
PS417_27105 -1.0 -2.5 spermidine/putrescine ABC transporter permease compare
PS417_23375 -1.0 -1.1 cytochrome C oxidase compare
PS417_16320 -1.0 -1.7 protein tyrosine phosphatase compare
PS417_22380 -1.0 -1.9 hypothetical protein compare
PS417_17675 -1.0 -1.0 ABC transporter compare
PS417_15100 -1.0 -1.2 BatB protein compare
PS417_08205 -1.0 -1.5 acetyltransferase compare


Specific Phenotypes

For 13 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms