Experiment set22IT088 for Pseudomonas putida KT2440

Compare to:

Growth at 10C

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.5 -5.2 Indole-3-glycerol phosphate synthase compare
PP_0293 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -6.0 -9.2 methionine biosynthesis protein MetW compare
PP_4678 -6.0 -16.0 Ketol-acid reductoisomerase compare
PP_0083 -5.9 -4.1 tryptophan synthase beta chain compare
PP_0966 -5.9 -12.0 Histidinol dehydrogenase compare
PP_2168 -5.9 -11.9 Transaldolase compare
PP_3511 -5.8 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.7 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_0082 -5.6 -6.7 tryptophan synthase alpha chain compare
PP_1988 -5.6 -10.7 3-isopropylmalate dehydrogenase compare
PP_1995 -5.5 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -5.4 -16.4 homoserine O-acetyltransferase compare
PP_4680 -5.2 -17.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -5.1 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -5.1 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -5.1 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_1088 -5.1 -12.6 Argininosuccinate synthase compare
PP_0290 -5.0 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -4.9 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -4.9 -13.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -4.8 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3999 -4.8 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -4.7 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_4994 -4.6 -8.5 conserved protein of unknown function compare
PP_0184 -4.6 -9.2 Argininosuccinate lyase compare
PP_4909 -4.6 -8.2 phosphoserine phosphatase compare
PP_0289 -4.5 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1898 -4.2 -4.3 MotA/TolQ/ExbB proton channel family protein compare
PP_2001 -4.2 -10.9 O-succinylhomoserine sulfhydrylase compare
PP_5289 -4.2 -5.8 Acetylglutamate kinase compare
PP_2371 -4.2 -8.9 Sulphite reductase hemoprotein, beta subunit compare
PP_4058 -4.1 -12.5 1,4-alpha-glucan branching enzyme compare
PP_4696 -4.0 -6.6 Nitrogen regulation protein NR(I) compare
PP_5128 -4.0 -8.4 Dihydroxy-acid dehydratase compare
PP_0965 -3.8 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -3.7 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0421 -3.7 -7.6 Anthranilate phosphoribosyltransferase compare
PP_2328 -3.7 -8.0 Phosphoadenosine phosphosulfate reductase compare
PP_5015 -3.3 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4880 -3.2 -9.0 exoribonuclease R compare
PP_2370 -3.2 -4.9 conserved protein of unknown function compare
PP_0758 -3.1 -7.0 conserved protein of unknown function compare
PP_2327 -2.9 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -2.9 -15.3 Anthranilate synthase component 1 compare
PP_4785 -2.8 -5.6 conserved exported protein of unknown function compare
PP_5095 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PP_5400 -2.6 -10.0 conserved protein of unknown function compare
PP_0420 -2.6 -6.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -2.5 -6.9 2-isopropylmalate synthase compare
PP_5303 -2.5 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5346 -2.5 -9.9 pyruvate carboxylase subunit B compare
PP_2378 -2.5 -3.7 Fe/S biogenesis protein NfuA compare
PP_4902 -2.5 -4.0 Oligoribonuclease compare
PP_4766 -2.4 -7.6 ATP-dependent RNA helicase compare
PP_5347 -2.4 -11.6 pyruvate carboxylase subunit A compare
PP_4964 -2.3 -4.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4700 -2.2 -2.6 pantothenate synthetase compare
PP_0872 -2.2 -8.2 Peptide chain release factor 3 compare
PP_4804 -2.1 -4.2 RlpA-like lipoprotein compare
PP_2388 -2.1 -3.7 Transporter, LysE family compare
PP_1664 -2.1 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1428 -2.1 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_5514 -2.0 -2.2 conserved protein of unknown function compare
PP_4942 -2.0 -3.8 conserved protein of unknown function compare
PP_1734 -2.0 -5.2 Probable septum site-determining protein MinC compare
PP_3417 -2.0 -5.7 D-gluconate transporter compare
PP_0063 -2.0 -4.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1304 -2.0 -10.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5217 -1.9 -9.9 Polyphosphate kinase compare
PP_0725 -1.9 -6.8 conserved hypothetical TPR repeat protein compare
PP_2402 -1.8 -2.8 putative Sensor histidine kinase compare
PP_4874 -1.8 -1.8 50S ribosomal protein L9 compare
PP_3821 -1.8 -10.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4693 -1.7 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_1198 -1.7 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0393 -1.7 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1656 -1.7 -6.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4532 -1.7 -2.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1079 -1.7 -6.1 Ornithine carbamoyltransferase compare
PP_5216 -1.7 -1.6 exopolyphosphatase compare
PP_4699 -1.6 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0962 -1.6 -4.2 toluene-tolerance protein compare
PP_1655 -1.6 -3.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5348 -1.6 -7.7 Transcriptional regulator, LysR family compare
PP_2390 -1.6 -5.4 Transcriptional regulator, LysR family compare
PP_1022 -1.6 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1303 -1.6 -6.9 Sulfate adenylyltransferase subunit 2 compare
PP_5230 -1.5 -4.3 Tyrosine recombinase XerC compare
PP_4099 -1.5 -13.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1654 -1.5 -3.1 cysteine synthase B compare
PP_1650 -1.5 -11.6 Sensor protein GacS compare
PP_0787 -1.5 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2433 -1.4 -1.6 conserved protein of unknown function compare
PP_0291 -1.4 -1.9 conserved protein of unknown function compare
PP_3603 -1.4 -5.4 Transcriptional regulator, GntR family compare
PP_0901 -1.4 -7.1 DNA-binding response regulator compare
PP_1325 -1.4 -5.9 putative lipoprotein compare
PP_1872 -1.4 -6.8 glutamate-pyruvate aminotransferase compare
PP_0547 -1.4 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1099 -1.3 -1.9 Cold shock protein CapB compare
PP_1231 -1.3 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2999 -1.3 -1.9 Glyoxalase family protein compare
PP_0914 -1.3 -6.8 GGDEF domain protein compare
PP_2414 -1.3 -1.6 conserved exported protein of unknown function compare
PP_1322 -1.3 -2.3 putative Lipoprotein compare
PP_5507 -1.3 -1.8 protein of unknown function compare
PP_0902 -1.3 -8.8 integral membrane sensor signal transduction histidine kinase compare
PP_1552 -1.3 -1.9 putative Phage replication protein compare
PP_4050 -1.3 -9.9 glycogen synthase compare
PP_1233 -1.3 -4.7 sulfurtransferase compare
PP_2309 -1.3 -1.8 conserved protein of unknown function compare
PP_0164 -1.3 -3.5 conserved protein of unknown function compare
PP_5104 -1.2 -6.2 thiazole synthase compare
PP_3893 -1.2 -3.1 putative Phage DNA helicase compare
PP_2163 -1.2 -5.0 VacJ lipoprotein compare
PP_4782 -1.2 -4.9 Phosphomethylpyrimidine kinase compare
PP_4726 -1.2 -2.9 Chaperone protein DnaJ compare
PP_2253 -1.2 -1.7 Transcriptional regulator, GntR family compare
PP_4356 -1.2 -2.6 Flagellar protein FliO compare
PP_5084 -1.2 -7.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1493 -1.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1778 -1.1 -6.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1912 -1.1 -4.0 Phosphate acyltransferase compare
PP_0048 -1.1 -1.6 conserved protein of unknown function compare
PP_5313 -1.1 -1.7 DNA-binding protein HU-alpha compare
PP_1733 -1.1 -2.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_0735 -1.1 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_4941 -1.1 -4.9 conserved exported protein of unknown function compare
PP_0339 -1.1 -0.8 Pyruvate dehydrogenase E1 component compare
PP_4517 -1.1 -2.3 conserved protein of unknown function compare
PP_1528 -1.1 -2.2 conserved protein of unknown function compare
PP_0362 -1.1 -6.3 Biotin synthase compare
PP_4697 -1.1 -2.5 poly(A) polymerase compare
PP_2088 -1.1 -2.0 RNA polymerase sigma factor SigX compare
PP_3105 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_3695 -1.1 -4.2 conserved protein of unknown function compare
PP_3662 -1.1 -6.2 conserved protein of unknown function compare
PP_1268 -1.1 -1.1 putative HtrA suppressor protein sohA compare
PP_5639 -1.0 -5.8 conserved exported protein of unknown function compare
PP_4724 -1.0 -0.7 Carbamoyl-phosphate synthase small chain compare
PP_2107 -1.0 -1.0 conserved protein of unknown function compare
PP_t49 -1.0 -5.1 tRNA-Met compare
PP_0035 -1.0 -1.4 putative bactoprenol-linked glycose transferase compare
PP_2032 -1.0 -4.6 putative ATPase compare
PP_5058 -1.0 -3.5 Carboxy-terminal-processing protease compare
PP_1719 -1.0 -6.3 Tail-specific protease prc compare
PP_4121 -1.0 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_3649 -1.0 -2.9 Transcriptional regulator, GntR family compare
PP_0065 -1.0 -2.8 NAD-binding component of TrK potassium transporter compare
PP_2908 -1.0 -3.8 DNA-binding transcriptional repressor compare
PP_0368 -1.0 -7.2 putative Acyl-CoA dehydrogenase compare
PP_1779 -1.0 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4943 -1.0 -2.1 putative Glycosyl transferase compare
PP_4120 -1.0 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_0138 -0.9 -7.1 conserved membrane protein of unknown function compare
PP_4937 -0.9 -2.4 toluene tolerance protein compare
PP_0232 -0.9 -1.4 ATP-binding taurine transporter subunit compare
PP_0377 -0.9 -2.2 coenzyme PQQ synthesis protein D compare
PP_1011 -0.9 -4.9 glucokinase compare
PP_4895 -0.9 -2.0 tRNA dimethylallyltransferase compare
PP_4124 -0.9 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_5508 -0.9 -1.3 conserved protein of unknown function compare
PP_2720 -0.9 -1.4 conserved protein of unknown function compare
PP_1009 -0.9 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1553 -0.9 -0.9 conserved protein of unknown function compare
PP_0406 -0.9 -2.3 Nucleotidyltransferase family protein compare
PP_0961 -0.9 -4.2 toluene tolerance protein compare
PP_3376 -0.9 -3.8 putative phosphonate dehydrogenase compare
PP_5472 -0.9 -2.2 conserved exported protein of unknown function compare
PP_4936 -0.9 -5.1 O-antigen polymerase compare
PP_1216 -0.9 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0938 -0.9 -6.0 conserved protein of unknown function compare
PP_2550 -0.8 -2.6 putative transcriptional regulatory protein compare
PP_1217 -0.8 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4126 -0.8 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4695 -0.8 -5.5 Sensory box histidine kinase compare
PP_5423 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_2144 -0.8 -2.1 Transcriptional regulator, TetR family compare
PP_5310 -0.8 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_1202 -0.8 -6.1 putative enzyme involved in modification of phospholipids conserved
PP_4004 -0.8 -2.6 DNA translocase FtsK compare
PP_3578 -0.8 -5.1 phosphoglucomutase compare
PP_2044 -0.8 -1.7 conserved inner membrane protein of unknown function compare
PP_1204 -0.8 -3.0 putative Lipoprotein compare
PP_3378 -0.8 -1.9 putative 2-ketogluconokinase compare
PP_0960 -0.8 -3.6 phospholipid ABC transporter binding protein compare
PP_1291 -0.8 -4.9 PhoH family protein compare
PP_1215 -0.8 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_0958 -0.8 -3.5 phospholipid ABC transporter ATP-binding subunit compare
PP_1629 -0.8 -3.2 Protein RecA compare
PP_2336 -0.8 -2.2 aconitate hydratase 1 compare
PP_1999 -0.8 -1.4 membrane protein required for colicin V production compare
PP_5701 -0.7 -1.5 conserved protein of unknown function compare
PP_4922 -0.7 -5.1 Phosphomethylpyrimidine synthase compare
PP_2229 -0.7 -2.2 putative K(+)/H(+) antiporter subunit C compare
PP_1214 -0.7 -1.7 putative transcriptional regulatory protein compare
PP_4938 -0.7 -4.2 putative Glycosyl transferase compare
PP_0794 -0.7 -2.5 1-phosphofructokinase monomer compare
PP_2883 -0.7 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For temperature D-Glucose in Pseudomonas putida KT2440

For temperature D-Glucose across organisms