Experiment set22IT087 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_22450 -4.8 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_06375 -3.9 -0.8 deoxycytidine triphosphate deaminase compare
PS417_08025 -3.4 -1.8 acetylornithine aminotransferase compare
PS417_03560 -3.2 -1.3 GTP-binding protein compare
PS417_14945 -3.2 -7.6 beta-lactamase conserved
PS417_24835 -3.2 -4.9 hypothetical protein compare
PS417_12870 -3.1 -1.9 enoyl-CoA hydratase compare
PS417_08365 -3.0 -0.9 hypothetical protein compare
PS417_00370 -2.9 -1.0 hypothetical protein compare
PS417_21515 -2.8 -14.2 transcriptional regulator compare
PS417_09210 -2.8 -1.5 TetR family transcriptional regulator compare
PS417_11705 -2.8 -6.9 cyclic peptide transporter compare
PS417_13800 -2.8 -2.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13795 -2.7 -6.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_23545 -2.7 -1.9 gamma-glutamyl kinase compare
PS417_07560 -2.5 -1.6 universal stress protein UspA compare
PS417_00385 -2.5 -1.0 Fur family transcriptional regulator compare
PS417_00195 -2.5 -2.2 hypothetical protein compare
PS417_11615 -2.5 -1.6 urea ABC transporter ATP-binding protein compare
PS417_04275 -2.5 -12.8 hypothetical protein compare
PS417_26990 -2.4 -0.7 RNA pyrophosphohydrolase compare
PS417_14960 -2.4 -8.6 ATPase conserved
PS417_11825 -2.4 -2.2 transcriptional regulator compare
PS417_08155 -2.4 -1.2 integration host factor subunit beta compare
PS417_21480 -2.4 -1.2 23S rRNA pseudouridylate synthase compare
PS417_09245 -2.4 -1.7 recombinase RdgC compare
PS417_14065 -2.4 -6.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_07620 -2.3 -1.1 beta-hexosaminidase compare
PS417_21000 -2.3 -2.0 CrfX protein compare
PS417_26985 -2.3 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13805 -2.3 -9.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13065 -2.3 -5.1 UDP pyrophosphate phosphatase compare
PS417_13010 -2.3 -2.1 alpha/beta hydrolase compare
PS417_00650 -2.2 -0.8 LysR family transcriptional regulator compare
PS417_00345 -2.2 -2.0 copper-binding protein compare
PS417_27075 -2.2 -3.1 thiol-disulfide isomerase compare
PS417_18070 -2.2 -0.9 general secretion pathway protein GspH compare
PS417_13820 -2.2 -4.9 UDP-glucose 6-dehydrogenase compare
PS417_04650 -2.1 -0.8 D-alanine--D-alanine ligase compare
PS417_19955 -2.1 -1.7 hypothetical protein compare
PS417_02880 -2.1 -1.0 copper chaperone compare
PS417_14965 -2.0 -4.1 transcriptional regulator conserved
PS417_28515 -2.0 -2.6 16S rRNA methyltransferase compare
PS417_18780 -2.0 -1.3 flavin reductase compare
PS417_27245 -2.0 -3.3 aminotransferase DegT compare
PS417_01605 -1.9 -1.3 phosphoglycerate mutase compare
PS417_17035 -1.9 -1.1 Cro/Cl family transcriptional regulator compare
PS417_22060 -1.9 -1.1 hypothetical protein compare
PS417_07120 -1.9 -3.9 RNA polymerase sigma-H factor compare
PS417_04500 -1.8 -1.2 hypothetical protein compare
PS417_22815 -1.8 -6.8 permease compare
PS417_05595 -1.8 -9.4 ornithine carbamoyltransferase compare
PS417_23915 -1.8 -3.6 pantoate--beta-alanine ligase compare
PS417_24745 -1.8 -2.5 gamma-glutamyl phosphate reductase compare
PS417_17215 -1.7 -1.8 peptidylprolyl isomerase compare
PS417_22640 -1.7 -2.8 cytochrome C biogenesis protein CcmE compare
PS417_07985 -1.7 -1.3 AbrB family transcriptional regulator compare
PS417_28050 -1.7 -2.3 hypothetical protein compare
PS417_08590 -1.6 -1.2 hypothetical protein compare
PS417_23375 -1.6 -1.6 cytochrome C oxidase compare
PS417_04340 -1.6 -5.0 ribosome hibernation promoting factor HPF compare
PS417_26370 -1.6 -2.8 RNA helicase compare
PS417_04220 -1.6 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_21055 -1.6 -3.9 threonyl-tRNA synthetase compare
PS417_03005 -1.6 -6.6 arginine decarboxylase compare
PS417_21125 -1.6 -3.7 phosphoadenosine phosphosulfate reductase compare
PS417_13790 -1.6 -2.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_20080 -1.6 -2.9 peptidase P60 compare
PS417_19195 -1.6 -2.5 hypothetical protein compare
PS417_20160 -1.5 -3.1 cysteine synthase compare
PS417_02720 -1.5 -0.8 TetR family transcriptional regulator compare
PS417_25390 -1.5 -2.6 MFS transporter compare
PS417_02485 -1.5 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23995 -1.5 -0.6 preprotein translocase subunit SecG compare
PS417_22535 -1.5 -4.4 ornithine acetyltransferase compare
PS417_06335 -1.5 -2.5 S-formylglutathione hydrolase compare
PS417_24500 -1.5 -2.5 DEAD/DEAH box helicase compare
PS417_24430 -1.5 -1.1 3-dehydroquinate dehydratase compare
PS417_21270 -1.5 -1.3 translation initiation factor 2 compare
PS417_02845 -1.5 -2.0 ABC transporter permease compare
PS417_24705 -1.5 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_27795 -1.5 -0.6 orotate phosphoribosyltransferase compare
PS417_27195 -1.4 -1.1 N-acetylglutamate synthase compare
PS417_02950 -1.4 -2.3 tRNA-dihydrouridine synthase B compare
PS417_03300 -1.4 -3.2 alanine acetyltransferase compare
PS417_27945 -1.4 -1.4 type VI secretion protein ImpA compare
PS417_24230 -1.4 -5.1 ATP-dependent protease compare
PS417_04475 -1.4 -2.2 hypothetical protein compare
PS417_17645 -1.4 -0.9 RND transporter compare
PS417_09330 -1.4 -2.0 NAD(P)H-quinone oxidoreductase compare
PS417_23380 -1.4 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_20650 -1.4 -5.2 hypothetical protein compare
PS417_19415 -1.4 -2.5 allantoinase compare
PS417_08125 -1.4 -0.4 prephenate dehydratase compare
PS417_03000 -1.4 -2.7 translation initiation factor Sui1 compare
PS417_02475 -1.4 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_16555 -1.4 -1.1 cupin compare
PS417_10985 -1.3 -0.7 NADH:flavin oxidoreductase compare
PS417_02070 -1.3 -0.7 membrane protein compare
PS417_02145 -1.3 -4.8 potassium transporter KefA compare
PS417_14710 -1.3 -1.1 isochorismatase compare
PS417_08230 -1.3 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_10015 -1.3 -0.8 hypothetical protein compare
PS417_00175 -1.3 -0.8 CigR compare
PS417_05025 -1.3 -1.4 maleylacetoacetate isomerase compare
PS417_08620 -1.3 -0.7 hypothetical protein compare
PS417_04380 -1.3 -0.8 ABC transporter permease compare
PS417_02885 -1.3 -1.7 hypothetical protein compare
PS417_20930 -1.3 -4.9 50S rRNA methyltransferase compare
PS417_23775 -1.3 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_17980 -1.3 -2.2 ABC transporter permease compare
PS417_16490 -1.3 -0.9 cell division protein FtsK compare
PS417_22780 -1.3 -2.2 XRE family transcriptional regulator compare
PS417_02695 -1.3 -1.1 protein hupE compare
PS417_25650 -1.2 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_14890 -1.2 -1.7 LysR family transcriptional regulator compare
PS417_21655 -1.2 -0.7 aspartate kinase compare
PS417_15705 -1.2 -1.3 nitrate reductase compare
PS417_22630 -1.2 -1.6 hypothetical protein compare
PS417_07165 -1.2 -2.5 dihydrodipicolinate synthase compare
PS417_15745 -1.2 -1.3 lipid carrier protein compare
PS417_06600 -1.2 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_25225 -1.2 -1.1 MFS transporter compare
PS417_12355 -1.2 -1.1 magnesium chelatase compare
PS417_22000 -1.2 -2.4 glutathione S-transferase compare
PS417_02865 -1.2 -1.9 peptidase compare
PS417_02365 -1.2 -2.3 hypothetical protein compare
PS417_02630 -1.2 -1.8 NAD synthetase compare
PS417_22375 -1.2 -0.7 cold-shock protein compare
PS417_27005 -1.2 -0.7 membrane protein compare
PS417_04385 -1.2 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_12540 -1.1 -2.1 hypothetical protein compare
PS417_06125 -1.1 -1.6 hypothetical protein compare
PS417_02990 -1.1 -1.6 hypothetical protein compare
PS417_23025 -1.1 -2.2 murein transglycosylase compare
PS417_12585 -1.1 -4.0 acriflavine resistance protein B compare
PS417_16065 -1.1 -1.9 3-phytase compare
PS417_19705 -1.1 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_22445 -1.1 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_22250 -1.1 -1.8 pseudouridine synthase compare
PS417_05525 -1.1 -1.9 Fis family transcriptional regulator compare
PS417_17515 -1.1 -2.5 GfdT protein compare
PS417_13455 -1.1 -1.3 alkaline proteinase inhibitor compare
PS417_25825 -1.1 -2.0 sulfurtransferase compare
PS417_22875 -1.1 -1.1 hypothetical protein compare
PS417_02560 -1.1 -1.2 23S rRNA methyltransferase compare
PS417_24125 -1.1 -2.2 hypothetical protein compare
PS417_20785 -1.1 -1.8 transcriptional regulator compare
PS417_21915 -1.1 -1.7 LysR family transcriptional regulator compare
PS417_02255 -1.1 -1.7 lipopolysaccharide kinase compare
PS417_18495 -1.1 -2.0 hypothetical protein compare
PS417_12535 -1.1 -1.6 nitrilase compare
PS417_19510 -1.1 -3.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_14260 -1.1 -1.7 phosphate ABC transporter permease compare
PS417_08000 -1.1 -4.1 beta-hydroxylase compare
PS417_25120 -1.1 -1.9 capsular biosynthesis protein compare
PS417_06685 -1.1 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_06175 -1.0 -3.4 cysteine sulfinate desulfinase compare
PS417_14315 -1.0 -1.8 2,5-dioxovalerate dehydrogenase compare
PS417_10715 -1.0 -1.6 Cro/Cl family transcriptional regulator compare
PS417_26550 -1.0 -2.6 ABC transporter compare
PS417_13575 -1.0 -1.9 succinylglutamate desuccinylase compare
PS417_13660 -1.0 -2.0 AsnC family transcriptional regulator compare
PS417_08200 -1.0 -2.1 hypothetical protein compare
PS417_26120 -1.0 -1.3 hypothetical protein compare
PS417_05505 -1.0 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_03730 -1.0 -2.4 phosphate acetyltransferase compare
PS417_21710 -1.0 -2.3 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_04060 -1.0 -2.6 dipeptide ABC transporter, permease component (from data) compare
PS417_12290 -1.0 -3.7 sulfite reductase compare
PS417_15110 -1.0 -2.7 protein BatD compare
PS417_09460 -1.0 -1.5 alkanesulfonate monooxygenase compare
PS417_05820 -1.0 -1.7 recombinase RecX compare
PS417_23330 -1.0 -1.9 hypothetical protein compare
PS417_21855 -1.0 -1.6 hypothetical protein compare
PS417_22350 -1.0 -1.2 Fis family transcriptional regulator compare
PS417_24235 -1.0 -1.8 hypothetical protein compare
PS417_18025 -1.0 -2.8 cytochrome C compare
PS417_25645 -1.0 -1.9 peptidase M23 compare
PS417_05515 -1.0 -3.6 hypothetical protein compare
PS417_07420 -1.0 -2.0 restriction endonuclease compare
PS417_26930 -1.0 -2.5 FAD-dependent oxidoreductase compare
PS417_11360 -1.0 -1.7 energy transducer TonB compare
PS417_05160 -1.0 -0.7 DNA polymerase III subunit chi compare
PS417_15105 -1.0 -3.3 membrane protein compare
PS417_19125 -1.0 -1.9 LysR family transcriptional regulator compare
PS417_26340 -1.0 -3.0 betaine-aldehyde dehydrogenase compare
PS417_04595 -1.0 -1.1 cell division protein MraZ compare
PS417_07035 -1.0 -3.7 uracil-DNA glycosylase compare
PS417_12380 -1.0 -3.7 peptidase S54 compare
PS417_23205 -1.0 -2.2 transcriptional regulator compare
PS417_24240 -1.0 -3.4 membrane protein compare
PS417_01915 -0.9 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22680 -0.9 -2.2 chemotaxis protein CheY compare
PS417_27690 -0.9 -2.2 XRE family transcriptional regulator compare
PS417_02225 -0.9 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_13245 -0.9 -1.8 saccharopine dehydrogenase compare
PS417_02800 -0.9 -1.1 acetyltransferase compare
PS417_02575 -0.9 -2.4 membrane protein compare
PS417_01715 -0.9 -0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms