Experiment set22IT086 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.2 -1.2 orotate phosphoribosyltransferase compare
PS417_18310 -3.5 -1.6 hypothetical protein compare
PS417_24835 -3.4 -6.3 hypothetical protein compare
PS417_27245 -3.3 -5.0 aminotransferase DegT compare
PS417_04650 -3.2 -1.2 D-alanine--D-alanine ligase compare
PS417_13820 -3.1 -9.1 UDP-glucose 6-dehydrogenase compare
PS417_02485 -3.0 -6.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21515 -3.0 -11.4 transcriptional regulator compare
PS417_13795 -2.8 -8.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_03465 -2.7 -2.2 type III secretion protein compare
PS417_11825 -2.7 -3.1 transcriptional regulator compare
PS417_13800 -2.7 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13805 -2.5 -8.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_13790 -2.5 -4.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_06375 -2.5 -0.9 deoxycytidine triphosphate deaminase compare
PS417_14945 -2.5 -6.8 beta-lactamase conserved
PS417_14965 -2.4 -6.7 transcriptional regulator conserved
PS417_24745 -2.4 -3.3 gamma-glutamyl phosphate reductase compare
PS417_02560 -2.2 -2.4 23S rRNA methyltransferase compare
PS417_14960 -2.2 -11.1 ATPase conserved
PS417_01915 -2.2 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_14065 -2.1 -2.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_23770 -2.1 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_01605 -2.0 -1.7 phosphoglycerate mutase compare
PS417_22445 -2.0 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_05595 -2.0 -10.3 ornithine carbamoyltransferase compare
PS417_18055 -2.0 -1.1 general secretion pathway protein GspK compare
PS417_25645 -2.0 -7.2 peptidase M23 compare
PS417_21510 -2.0 -2.0 histidine kinase compare
PS417_11705 -2.0 -6.2 cyclic peptide transporter compare
PS417_21125 -2.0 -5.9 phosphoadenosine phosphosulfate reductase compare
PS417_07120 -2.0 -3.5 RNA polymerase sigma-H factor compare
PS417_19350 -2.0 -6.0 GTP cyclohydrolase compare
PS417_23915 -1.9 -4.0 pantoate--beta-alanine ligase compare
PS417_22450 -1.9 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_08365 -1.9 -1.0 hypothetical protein compare
PS417_04275 -1.8 -10.0 hypothetical protein compare
PS417_02880 -1.8 -1.3 copper chaperone compare
PS417_27300 -1.8 -1.0 cell division protein ZapA compare
PS417_21000 -1.8 -1.7 CrfX protein compare
PS417_23025 -1.8 -5.8 murein transglycosylase compare
PS417_07620 -1.7 -1.5 beta-hexosaminidase compare
PS417_08335 -1.7 -2.3 hypothetical protein compare
PS417_02145 -1.7 -7.9 potassium transporter KefA compare
PS417_11400 -1.7 -1.9 phosphoglycerate mutase compare
PS417_24525 -1.7 -3.1 nuclease compare
PS417_20160 -1.7 -2.4 cysteine synthase compare
PS417_24155 -1.5 -1.0 ATP-binding protein compare
PS417_22565 -1.5 -0.8 formyltetrahydrofolate deformylase compare
PS417_07170 -1.5 -3.8 hypothetical protein compare
PS417_13065 -1.5 -3.6 UDP pyrophosphate phosphatase compare
PS417_01095 -1.5 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_06730 -1.5 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_21655 -1.5 -1.2 aspartate kinase compare
PS417_06245 -1.5 -1.4 zinc metallopeptidase RseP compare
PS417_08590 -1.4 -2.0 hypothetical protein compare
PS417_22535 -1.4 -5.8 ornithine acetyltransferase compare
PS417_27195 -1.4 -1.1 N-acetylglutamate synthase compare
PS417_24500 -1.4 -3.5 DEAD/DEAH box helicase compare
PS417_22815 -1.4 -6.0 permease compare
PS417_16195 -1.4 -0.9 AraC family transcriptional regulator compare
PS417_20855 -1.3 -1.0 hypothetical protein compare
PS417_27800 -1.3 -0.9 exodeoxyribonuclease III compare
PS417_04595 -1.3 -1.8 cell division protein MraZ compare
PS417_08025 -1.3 -1.4 acetylornithine aminotransferase compare
PS417_23775 -1.3 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_16490 -1.3 -1.2 cell division protein FtsK compare
PS417_06165 -1.3 -2.8 thiamine biosynthesis protein ThiF compare
PS417_09605 -1.3 -2.0 glycosyl transferase compare
PS417_21430 -1.3 -1.4 3-oxoacyl-ACP synthase compare
PS417_08000 -1.2 -5.7 beta-hydroxylase compare
PS417_27040 -1.2 -1.4 3-phosphoglycerate dehydrogenase compare
PS417_18425 -1.2 -1.6 sporulation protein compare
PS417_04340 -1.2 -4.4 ribosome hibernation promoting factor HPF compare
PS417_26985 -1.2 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07710 -1.2 -3.2 membrane protein compare
PS417_03260 -1.2 -0.9 5S ribosomal RNA compare
PS417_00045 -1.2 -1.7 glycerol acyltransferase compare
PS417_22060 -1.2 -1.1 hypothetical protein compare
PS417_22570 -1.2 -0.7 H-NS histone compare
PS417_11475 -1.2 -2.7 membrane protein compare
PS417_07190 -1.1 -3.2 MFS transporter compare
PS417_28050 -1.1 -2.4 hypothetical protein compare
PS417_21360 -1.1 -0.9 termination factor Rho compare
PS417_13785 -1.1 -1.2 hypothetical protein compare
PS417_18710 -1.1 -3.7 hypothetical protein compare
PS417_21630 -1.1 -1.4 magnesium transporter compare
PS417_04380 -1.1 -0.8 ABC transporter permease compare
PS417_10320 -1.1 -1.3 hypothetical protein compare
PS417_20930 -1.1 -4.8 50S rRNA methyltransferase compare
PS417_23715 -1.1 -1.7 cupin compare
PS417_07470 -1.1 -1.2 hypothetical protein compare
PS417_02150 -1.1 -5.5 potassium/proton antiporter compare
PS417_07165 -1.1 -2.1 dihydrodipicolinate synthase compare
PS417_23380 -1.1 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_01115 -1.0 -1.3 serine acetyltransferase compare
PS417_13075 -1.0 -0.8 hypothetical protein compare
PS417_27595 -1.0 -1.5 recombinase XerC compare
PS417_15095 -1.0 -2.3 hypothetical protein compare
PS417_20985 -1.0 -0.7 porin compare
PS417_05525 -1.0 -3.0 Fis family transcriptional regulator compare
PS417_03705 -1.0 -3.6 2-alkenal reductase compare
PS417_17590 -1.0 -1.7 ABC transporter substrate-binding protein compare
PS417_17035 -1.0 -1.0 Cro/Cl family transcriptional regulator compare
PS417_15100 -1.0 -1.2 BatB protein compare
PS417_27135 -1.0 -0.6 glutamine synthetase compare
PS417_19600 -1.0 -0.9 exonuclease compare
PS417_07695 -1.0 -4.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_04220 -1.0 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_06335 -1.0 -2.5 S-formylglutathione hydrolase compare
PS417_27110 -1.0 -2.9 spermidine/putrescine ABC transporter permease compare
PS417_13455 -1.0 -1.9 alkaline proteinase inhibitor compare
PS417_20725 -1.0 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_15295 -1.0 -2.5 Fis family transcriptional regulator compare
PS417_25790 -1.0 -3.2 aminoglycoside phosphotransferase compare
PS417_18450 -1.0 -2.2 hydrolase compare
PS417_21700 -1.0 -2.6 arginine N-succinyltransferase compare
PS417_26730 -1.0 -0.5 pyrroline-5-carboxylate reductase compare
PS417_18495 -1.0 -1.7 hypothetical protein compare
PS417_20225 -1.0 -2.9 GntR family transcriptional regulator compare
PS417_19190 -1.0 -2.3 BolA family transcriptional regulator compare
PS417_18360 -1.0 -1.8 hypothetical protein compare
PS417_07035 -1.0 -4.3 uracil-DNA glycosylase compare
PS417_13780 -0.9 -2.2 integrase compare
PS417_08410 -0.9 -1.5 hypothetical protein compare
PS417_23385 -0.9 -4.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_25650 -0.9 -3.0 anhydro-N-acetylmuramic acid kinase compare
PS417_04290 -0.9 -2.4 hypothetical protein compare
PS417_17160 -0.9 -1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_00845 -0.9 -1.2 transcriptional regulator compare
PS417_25390 -0.9 -2.7 MFS transporter compare
PS417_27935 -0.9 -1.0 type VI secretion protein compare
PS417_05515 -0.9 -5.1 hypothetical protein compare
PS417_05105 -0.9 -2.3 membrane protein compare
PS417_13755 -0.9 -1.6 oxidoreductase compare
PS417_20650 -0.9 -4.5 hypothetical protein compare
PS417_05500 -0.9 -1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_20915 -0.9 -1.8 hypothetical protein compare
PS417_23150 -0.9 -2.1 Cro/Cl family transcriptional regulator compare
PS417_26340 -0.9 -3.5 betaine-aldehyde dehydrogenase compare
PS417_08740 -0.9 -1.4 ribose-phosphate pyrophosphokinase compare
PS417_16520 -0.9 -1.0 cold-shock protein compare
PS417_20700 -0.9 -3.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_20785 -0.9 -1.7 transcriptional regulator compare
PS417_03940 -0.9 -2.4 membrane protein compare
PS417_16885 -0.9 -1.3 hypothetical protein compare
PS417_26725 -0.9 -2.5 hypothetical protein compare
PS417_17310 -0.9 -2.9 allantoate amidohydrolase compare
PS417_26120 -0.8 -1.6 hypothetical protein compare
PS417_14710 -0.8 -1.1 isochorismatase compare
PS417_12845 -0.8 -2.5 NAD(P)H dehydrogenase compare
PS417_11865 -0.8 -1.6 xylose isomerase compare
PS417_05235 -0.8 -1.5 peptidase inhibitor I42 compare
PS417_06925 -0.8 -2.8 LysR family transcriptional regulator compare
PS417_01580 -0.8 -1.1 imidazole glycerol phosphate synthase compare
PS417_23205 -0.8 -2.6 transcriptional regulator compare
PS417_14140 -0.8 -1.2 membrane protein compare
PS417_02950 -0.8 -1.9 tRNA-dihydrouridine synthase B compare
PS417_02110 -0.8 -1.2 acyl carrier protein compare
PS417_22630 -0.8 -1.3 hypothetical protein compare
PS417_21425 -0.8 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_27025 -0.8 -2.8 DNA-binding protein compare
PS417_14880 -0.8 -1.5 thioesterase compare
PS417_24240 -0.8 -3.4 membrane protein compare
PS417_13985 -0.8 -2.7 dehydrogenase compare
PS417_19520 -0.8 -1.8 transcriptional regulator compare
PS417_05140 -0.8 -1.2 dipicolinate synthase compare
PS417_26295 -0.8 -1.8 gamma-butyrobetaine dioxygenase compare
PS417_27155 -0.8 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_09245 -0.8 -0.9 recombinase RdgC compare
PS417_23330 -0.8 -1.4 hypothetical protein compare
PS417_27865 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_09045 -0.8 -1.8 histidine kinase compare
PS417_02975 -0.8 -2.0 3-dehydroquinate dehydratase compare
PS417_24895 -0.8 -0.8 hypothetical protein compare
PS417_01140 -0.8 -1.7 taurine ABC transporter permease compare
PS417_19430 -0.8 -1.4 ureidoglycolate hydrolase compare
PS417_26755 -0.8 -1.3 nucleoside-triphosphate diphosphatase compare
PS417_26370 -0.8 -1.7 RNA helicase compare
PS417_27105 -0.8 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_09440 -0.8 -1.0 MerR family transcriptional regulator compare
PS417_26550 -0.8 -1.8 ABC transporter compare
PS417_09335 -0.8 -1.3 HAD family hydrolase compare
PS417_16825 -0.8 -1.9 membrane protein compare
PS417_22780 -0.8 -2.1 XRE family transcriptional regulator compare
PS417_17125 -0.8 -1.9 transcriptional regulator compare
PS417_18010 -0.7 -1.5 acid phosphatase compare
PS417_22935 -0.7 -1.5 hypothetical protein compare
PS417_28515 -0.7 -1.6 16S rRNA methyltransferase compare
PS417_02960 -0.7 -2.9 ribosomal protein L11 methyltransferase compare
PS417_26345 -0.7 -3.3 choline dehydrogenase compare
PS417_20705 -0.7 -2.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_28295 -0.7 -1.5 glutamine synthetase compare
PS417_04185 -0.7 -1.3 hypothetical protein compare
PS417_13510 -0.7 -0.7 polyketide cyclase compare
PS417_02555 -0.7 -4.5 exoribonuclease R compare
PS417_11360 -0.7 -2.0 energy transducer TonB compare
PS417_09930 -0.7 -1.1 hypothetical protein compare
PS417_02630 -0.7 -1.5 NAD synthetase compare
PS417_10335 -0.7 -1.0 peroxiredoxin compare


Specific Phenotypes

For 7 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms