Experiment set22IT085 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_27300 -4.4 -1.3 cell division protein ZapA compare
PS417_27795 -4.1 -1.2 orotate phosphoribosyltransferase compare
PS417_06375 -3.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_04650 -3.2 -1.3 D-alanine--D-alanine ligase compare
PS417_24745 -3.2 -4.2 gamma-glutamyl phosphate reductase compare
PS417_24835 -3.2 -4.9 hypothetical protein compare
PS417_13805 -3.0 -10.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_08365 -3.0 -1.2 hypothetical protein compare
PS417_13820 -3.0 -8.8 UDP-glucose 6-dehydrogenase compare
PS417_27245 -2.9 -4.9 aminotransferase DegT compare
PS417_13795 -2.9 -8.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_21515 -2.7 -8.9 transcriptional regulator compare
PS417_02485 -2.6 -4.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14065 -2.6 -6.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_20855 -2.5 -1.5 hypothetical protein compare
PS417_01605 -2.5 -2.0 phosphoglycerate mutase compare
PS417_26990 -2.5 -1.0 RNA pyrophosphohydrolase compare
PS417_21125 -2.3 -3.8 phosphoadenosine phosphosulfate reductase compare
PS417_13790 -2.3 -4.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_14945 -2.2 -7.8 beta-lactamase compare
PS417_00755 -2.2 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_26985 -2.2 -7.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07120 -2.2 -6.2 RNA polymerase sigma-H factor compare
PS417_01915 -2.2 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_14960 -2.1 -9.2 ATPase conserved
PS417_27135 -2.1 -1.0 glutamine synthetase compare
PS417_08090 -2.1 -0.8 3-oxoacyl-ACP reductase compare
PS417_11825 -2.1 -2.2 transcriptional regulator compare
PS417_13800 -2.0 -2.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23915 -2.0 -3.7 pantoate--beta-alanine ligase compare
PS417_20610 -2.0 -1.6 hypothetical protein compare
PS417_05510 -1.9 -4.8 alpha/beta hydrolase compare
PS417_25645 -1.9 -5.0 peptidase M23 compare
PS417_22450 -1.9 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_08230 -1.9 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_14965 -1.9 -4.3 transcriptional regulator conserved
PS417_00650 -1.9 -1.0 LysR family transcriptional regulator compare
PS417_26730 -1.8 -0.7 pyrroline-5-carboxylate reductase compare
PS417_18055 -1.8 -1.5 general secretion pathway protein GspK compare
PS417_04275 -1.8 -10.7 hypothetical protein compare
PS417_02145 -1.8 -7.6 potassium transporter KefA compare
PS417_07560 -1.8 -1.8 universal stress protein UspA compare
PS417_23770 -1.8 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_22535 -1.8 -5.1 ornithine acetyltransferase compare
PS417_23095 -1.7 -1.2 exodeoxyribonuclease compare
PS417_11705 -1.7 -5.3 cyclic peptide transporter compare
PS417_27195 -1.7 -1.6 N-acetylglutamate synthase compare
PS417_15090 -1.7 -2.3 hypothetical protein compare
PS417_04475 -1.7 -4.3 hypothetical protein compare
PS417_16195 -1.6 -1.0 AraC family transcriptional regulator compare
PS417_05595 -1.6 -7.5 ornithine carbamoyltransferase compare
PS417_13140 -1.6 -2.0 oxidoreductase compare
PS417_06685 -1.6 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_15100 -1.6 -1.5 BatB protein compare
PS417_13510 -1.5 -1.2 polyketide cyclase compare
PS417_23490 -1.5 -1.4 dihydrofolate reductase compare
PS417_07620 -1.4 -1.9 beta-hexosaminidase compare
PS417_21430 -1.4 -1.9 3-oxoacyl-ACP synthase compare
PS417_21655 -1.4 -1.3 aspartate kinase compare
PS417_20160 -1.4 -1.9 cysteine synthase compare
PS417_06165 -1.4 -3.2 thiamine biosynthesis protein ThiF compare
PS417_28050 -1.4 -2.6 hypothetical protein compare
PS417_12520 -1.4 -2.7 hypothetical protein compare
PS417_23025 -1.4 -4.5 murein transglycosylase compare
PS417_16555 -1.4 -1.0 cupin compare
PS417_07170 -1.4 -3.9 hypothetical protein compare
PS417_02720 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_05525 -1.3 -3.3 Fis family transcriptional regulator compare
PS417_26370 -1.3 -3.2 RNA helicase compare
PS417_22840 -1.3 -1.7 tRNA-Met compare
PS417_27800 -1.3 -0.9 exodeoxyribonuclease III compare
PS417_23545 -1.3 -1.6 gamma-glutamyl kinase compare
PS417_16845 -1.3 -2.1 monovalent cation/H+ antiporter subunit E compare
PS417_11185 -1.3 -2.1 dimethylallyltransferase compare
PS417_07035 -1.3 -7.7 uracil-DNA glycosylase compare
PS417_15105 -1.2 -5.5 membrane protein compare
PS417_25270 -1.2 -2.3 NrdR family transcriptional regulator compare
PS417_09930 -1.2 -1.6 hypothetical protein compare
PS417_05505 -1.2 -4.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_28220 -1.2 -2.2 LysR family transcriptional regulator compare
PS417_02805 -1.2 -1.7 urease subunit gamma compare
PS417_04595 -1.2 -1.8 cell division protein MraZ compare
PS417_02225 -1.2 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06730 -1.2 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_21425 -1.2 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_02560 -1.2 -0.8 23S rRNA methyltransferase compare
PS417_02975 -1.2 -3.5 3-dehydroquinate dehydratase compare
PS417_22445 -1.2 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_13785 -1.1 -1.8 hypothetical protein compare
PS417_08250 -1.1 -1.5 competence protein ComEA compare
PS417_04290 -1.1 -2.5 hypothetical protein compare
PS417_02880 -1.1 -1.1 copper chaperone compare
PS417_27870 -1.1 -1.8 ATP-dependent DNA helicase RecG compare
PS417_08245 -1.1 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_20930 -1.1 -5.5 50S rRNA methyltransferase compare
PS417_10675 -1.1 -0.8 TetR family transcriptional regulator compare
PS417_03875 -1.1 -1.8 membrane protein compare
PS417_02980 -1.1 -1.1 chemotaxis protein compare
PS417_18710 -1.1 -5.4 hypothetical protein compare
PS417_25790 -1.1 -2.4 aminoglycoside phosphotransferase compare
PS417_27705 -1.1 -1.2 amino acid dehydrogenase compare
PS417_02035 -1.1 -2.1 3-ketoacyl-ACP reductase compare
PS417_08130 -1.0 -1.3 aspartate aminotransferase compare
PS417_14075 -1.0 -1.2 hypothetical protein compare
PS417_00370 -1.0 -0.9 hypothetical protein compare
PS417_09975 -1.0 -2.9 hypothetical protein compare
PS417_25650 -1.0 -2.4 anhydro-N-acetylmuramic acid kinase compare
PS417_18150 -1.0 -2.6 chemotaxis protein CheY compare
PS417_08360 -1.0 -1.7 DoxX family protein compare
PS417_19350 -1.0 -2.6 GTP cyclohydrolase compare
PS417_12375 -1.0 -0.7 serine/threonine protein phosphatase compare
PS417_02885 -1.0 -1.8 hypothetical protein compare
PS417_24370 -1.0 -0.7 (2Fe-2S)-binding protein compare
PS417_02370 -1.0 -1.3 ADP-ribose pyrophosphatase compare
PS417_15895 -1.0 -2.2 iron dicitrate transport regulator FecR compare
PS417_17380 -1.0 -2.6 membrane protein compare
PS417_27075 -1.0 -2.1 thiol-disulfide isomerase compare
PS417_23170 -1.0 -1.4 FeS assembly protein IscX compare
PS417_02150 -1.0 -5.0 potassium/proton antiporter compare
PS417_11380 -1.0 -2.3 peptidylprolyl isomerase compare
PS417_18230 -1.0 -3.2 amidase compare
PS417_14710 -1.0 -1.2 isochorismatase compare
PS417_13145 -1.0 -1.9 50S ribosomal protein L21 compare
PS417_20700 -0.9 -4.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_22195 -0.9 -3.1 peptidase compare
PS417_02870 -0.9 -3.5 TonB-dependent receptor compare
PS417_22815 -0.9 -3.8 permease compare
PS417_20715 -0.9 -1.2 cytochrome Cbb3 compare
PS417_18780 -0.9 -1.2 flavin reductase compare
PS417_05500 -0.9 -1.2 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_19275 -0.9 -1.0 hypothetical protein compare
PS417_23205 -0.9 -2.3 transcriptional regulator compare
PS417_19955 -0.9 -1.0 hypothetical protein compare
PS417_06025 -0.9 -1.5 alpha/beta hydrolase compare
PS417_01750 -0.9 -1.7 histidine ammonia-lyase compare
PS417_12635 -0.9 -2.1 alkanesulfonate monooxygenase compare
PS417_20025 -0.9 -1.1 alpha-ribazole phosphatase compare
PS417_02800 -0.9 -1.4 acetyltransferase compare
PS417_26240 -0.9 -1.4 N-methylproline demethylase compare
PS417_01620 -0.9 -1.4 preprotein translocase subunit SecB compare
PS417_21480 -0.9 -1.0 23S rRNA pseudouridylate synthase compare
PS417_26545 -0.9 -3.6 16S rRNA methyltransferase compare
PS417_00385 -0.9 -0.8 Fur family transcriptional regulator compare
PS417_07820 -0.9 -1.5 transposase compare
PS417_19065 -0.9 -0.7 monooxygenase compare
PS417_02480 -0.9 -2.7 DNA mismatch repair protein compare
PS417_04585 -0.9 -1.0 hypothetical protein compare
PS417_20705 -0.9 -2.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_15875 -0.8 -1.5 LuxR family transcriptional regulator compare
PS417_00065 -0.8 -1.2 3-methyladenine DNA glycosylase compare
PS417_14245 -0.8 -1.5 hypothetical protein compare
PS417_03260 -0.8 -0.8 5S ribosomal RNA compare
PS417_26770 -0.8 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_14605 -0.8 -2.2 adenylate kinase compare
PS417_02255 -0.8 -1.3 lipopolysaccharide kinase compare
PS417_20650 -0.8 -4.0 hypothetical protein compare
PS417_24500 -0.8 -2.3 DEAD/DEAH box helicase compare
PS417_13065 -0.8 -1.9 UDP pyrophosphate phosphatase compare
PS417_24230 -0.8 -4.4 ATP-dependent protease compare
PS417_19505 -0.8 -1.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_26365 -0.8 -1.4 EmrB/QacA subfamily drug resistance transporter compare
PS417_26760 -0.8 -2.2 oxidase compare
PS417_20785 -0.8 -1.2 transcriptional regulator compare
PS417_06780 -0.8 -2.5 TetR family transcriptional regulator compare
PS417_14050 -0.8 -1.7 recombinase compare
PS417_00915 -0.8 -2.0 aminotransferase compare
PS417_16510 -0.8 -2.1 Clp protease ClpX compare
PS417_28515 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_18070 -0.8 -0.7 general secretion pathway protein GspH compare
PS417_23250 -0.8 -3.3 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_17490 -0.8 -1.4 ABC transporter ATP-binding protein compare
PS417_13575 -0.8 -1.6 succinylglutamate desuccinylase compare
PS417_08025 -0.8 -0.7 acetylornithine aminotransferase compare
PS417_27025 -0.8 -3.3 DNA-binding protein compare
PS417_11175 -0.8 -1.5 AraC family transcriptional regulator compare
PS417_02555 -0.8 -4.9 exoribonuclease R compare
PS417_20755 -0.8 -2.2 membrane protein compare
PS417_24615 -0.8 -0.9 hypothetical protein compare
PS417_06945 -0.8 -0.8 membrane protein compare
PS417_00975 -0.8 -1.0 hypothetical protein compare
PS417_21705 -0.8 -2.3 arginine N-succinyltransferase compare
PS417_09545 -0.7 -1.5 aldehyde-activating protein compare
PS417_07465 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_13780 -0.7 -2.5 integrase compare
PS417_10275 -0.7 -1.3 histidine kinase compare
PS417_26175 -0.7 -0.5 sarcosine oxidase subunit gamma compare
PS417_06895 -0.7 -1.6 DNA-binding protein compare
PS417_04525 -0.7 -3.6 16S rRNA methyltransferase compare
PS417_00405 -0.7 -3.6 DNA polymerase I compare
PS417_02405 -0.7 -4.3 hypothetical protein compare
PS417_25315 -0.7 -2.6 membrane protein compare
PS417_27110 -0.7 -2.1 spermidine/putrescine ABC transporter permease compare
PS417_23615 -0.7 -1.4 sulfate transporter compare
PS417_07165 -0.7 -3.0 dihydrodipicolinate synthase compare
PS417_03300 -0.7 -1.1 alanine acetyltransferase compare
PS417_15675 -0.7 -1.6 chemotaxis protein compare
PS417_04865 -0.7 -1.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_08200 -0.7 -1.3 hypothetical protein compare
PS417_16490 -0.7 -0.8 cell division protein FtsK compare
PS417_05830 -0.7 -1.9 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms