Experiment set22IT084 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.1 -1.2 orotate phosphoribosyltransferase compare
PS417_24835 -4.0 -5.6 hypothetical protein compare
PS417_24745 -3.1 -4.2 gamma-glutamyl phosphate reductase compare
PS417_13820 -2.9 -8.7 UDP-glucose 6-dehydrogenase compare
PS417_02880 -2.9 -1.1 copper chaperone compare
PS417_21515 -2.9 -8.9 transcriptional regulator compare
PS417_13795 -2.9 -5.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_11825 -2.8 -2.6 transcriptional regulator compare
PS417_13800 -2.7 -2.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04380 -2.7 -1.3 ABC transporter permease compare
PS417_14065 -2.6 -5.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02485 -2.5 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23025 -2.5 -7.5 murein transglycosylase compare
PS417_13855 -2.5 -1.5 acetyl-CoA acetyltransferase compare
PS417_13805 -2.4 -10.1 4-amino-4-deoxy-L-arabinose transferase compare
PS417_06375 -2.4 -1.0 deoxycytidine triphosphate deaminase compare
PS417_00345 -2.3 -2.6 copper-binding protein compare
PS417_22450 -2.2 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_14965 -2.2 -5.1 transcriptional regulator conserved
PS417_06600 -2.2 -1.3 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_04650 -2.1 -1.1 D-alanine--D-alanine ligase compare
PS417_21510 -2.1 -1.8 histidine kinase compare
PS417_27245 -2.1 -4.6 aminotransferase DegT compare
PS417_13790 -2.1 -4.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_07620 -2.0 -2.1 beta-hexosaminidase compare
PS417_21125 -2.0 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_19605 -2.0 -1.7 hypothetical protein compare
PS417_19285 -1.9 -1.3 ankyrin compare
PS417_14960 -1.9 -9.4 ATPase conserved
PS417_20785 -1.9 -4.0 transcriptional regulator compare
PS417_05500 -1.7 -2.5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_02145 -1.7 -8.9 potassium transporter KefA compare
PS417_00370 -1.7 -1.2 hypothetical protein compare
PS417_23490 -1.7 -1.5 dihydrofolate reductase compare
PS417_18545 -1.6 -2.7 cell division protein compare
PS417_00065 -1.6 -1.4 3-methyladenine DNA glycosylase compare
PS417_03815 -1.6 -2.1 DNA transporter compare
PS417_25645 -1.6 -3.9 peptidase M23 compare
PS417_26985 -1.6 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01605 -1.6 -1.5 phosphoglycerate mutase compare
PS417_23545 -1.6 -1.7 gamma-glutamyl kinase compare
PS417_11705 -1.6 -6.3 cyclic peptide transporter compare
PS417_23915 -1.5 -3.0 pantoate--beta-alanine ligase compare
PS417_20160 -1.5 -3.9 cysteine synthase compare
PS417_22535 -1.5 -4.5 ornithine acetyltransferase compare
PS417_22780 -1.5 -3.3 XRE family transcriptional regulator compare
PS417_24155 -1.5 -1.0 ATP-binding protein compare
PS417_24525 -1.5 -1.8 nuclease compare
PS417_02560 -1.5 -1.8 23S rRNA methyltransferase compare
PS417_05595 -1.5 -6.9 ornithine carbamoyltransferase compare
PS417_24615 -1.5 -1.3 hypothetical protein compare
PS417_21480 -1.4 -1.0 23S rRNA pseudouridylate synthase compare
PS417_27155 -1.4 -1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_14980 -1.4 -1.0 universal stress protein UspA compare
PS417_04275 -1.4 -8.9 hypothetical protein compare
PS417_21000 -1.4 -2.0 CrfX protein compare
PS417_27870 -1.4 -3.1 ATP-dependent DNA helicase RecG compare
PS417_19350 -1.4 -3.9 GTP cyclohydrolase compare
PS417_14940 -1.4 -1.7 LysR family transcriptional regulator compare
PS417_06245 -1.4 -1.4 zinc metallopeptidase RseP compare
PS417_23770 -1.4 -1.6 exodeoxyribonuclease V subunit alpha compare
PS417_10145 -1.4 -2.3 hypothetical protein compare
PS417_14945 -1.4 -4.4 beta-lactamase compare
PS417_26900 -1.4 -1.6 L-cystine transporter tcyP compare
PS417_06945 -1.4 -1.2 membrane protein compare
PS417_01915 -1.4 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08090 -1.3 -0.7 3-oxoacyl-ACP reductase compare
PS417_17645 -1.3 -1.1 RND transporter compare
PS417_28050 -1.3 -2.2 hypothetical protein compare
PS417_06540 -1.3 -1.2 membrane protein compare
PS417_22210 -1.3 -1.4 AraC family transcriptional regulator compare
PS417_20855 -1.3 -0.9 hypothetical protein compare
PS417_02950 -1.2 -1.9 tRNA-dihydrouridine synthase B compare
PS417_16555 -1.2 -1.4 cupin compare
PS417_04915 -1.2 -1.5 glutamine ABC transporter ATP-binding protein compare
PS417_27195 -1.2 -1.0 N-acetylglutamate synthase compare
PS417_21430 -1.2 -1.6 3-oxoacyl-ACP synthase compare
PS417_07120 -1.2 -3.4 RNA polymerase sigma-H factor compare
PS417_17630 -1.1 -2.0 RNA polymerase sigma factor compare
PS417_00590 -1.1 -2.2 5S ribosomal RNA compare
PS417_25315 -1.1 -3.0 membrane protein compare
PS417_26760 -1.1 -3.7 oxidase compare
PS417_25790 -1.1 -3.3 aminoglycoside phosphotransferase compare
PS417_02695 -1.1 -1.3 protein hupE compare
PS417_03465 -1.1 -0.9 type III secretion protein compare
PS417_20610 -1.1 -0.6 hypothetical protein compare
PS417_13065 -1.1 -2.9 UDP pyrophosphate phosphatase compare
PS417_01620 -1.1 -1.8 preprotein translocase subunit SecB compare
PS417_12355 -1.1 -1.0 magnesium chelatase compare
PS417_02070 -1.1 -0.8 membrane protein compare
PS417_11400 -1.1 -1.2 phosphoglycerate mutase compare
PS417_07035 -1.0 -4.6 uracil-DNA glycosylase compare
PS417_15035 -1.0 -1.3 alkylhydroperoxidase compare
PS417_18420 -1.0 -2.4 deoxyribonuclease compare
PS417_14280 -1.0 -1.6 hypothetical protein compare
PS417_00175 -1.0 -1.0 CigR compare
PS417_22195 -1.0 -2.9 peptidase compare
PS417_21855 -1.0 -2.3 hypothetical protein compare
PS417_25650 -1.0 -2.8 anhydro-N-acetylmuramic acid kinase compare
PS417_03940 -1.0 -3.6 membrane protein compare
PS417_24235 -1.0 -1.7 hypothetical protein compare
PS417_04340 -1.0 -2.9 ribosome hibernation promoting factor HPF compare
PS417_13785 -1.0 -2.1 hypothetical protein compare
PS417_10870 -1.0 -1.8 GABA permease compare
PS417_24230 -1.0 -5.2 ATP-dependent protease compare
PS417_02630 -1.0 -1.7 NAD synthetase compare
PS417_22980 -0.9 -2.3 GntR family transcriptional regulator compare
PS417_26730 -0.9 -0.5 pyrroline-5-carboxylate reductase compare
PS417_22815 -0.9 -4.7 permease compare
PS417_02895 -0.9 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_15100 -0.9 -1.6 BatB protein compare
PS417_19190 -0.9 -2.4 BolA family transcriptional regulator compare
PS417_03705 -0.9 -2.7 2-alkenal reductase compare
PS417_03920 -0.9 -2.3 dephospho-CoA kinase compare
PS417_23950 -0.9 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_27180 -0.9 -1.9 peroxidase compare
PS417_15380 -0.9 -3.8 hypothetical protein compare
PS417_09600 -0.9 -3.7 glycosyl transferase family 1 compare
PS417_13755 -0.9 -1.0 oxidoreductase compare
PS417_13445 -0.9 -1.2 D-aminopeptidase compare
PS417_19945 -0.9 -2.5 MarR family transcriptional regulator compare
PS417_19835 -0.9 -1.3 flagellar biosynthesis protein FliS compare
PS417_28265 -0.9 -1.6 pyridoxamine kinase compare
PS417_00405 -0.9 -4.7 DNA polymerase I compare
PS417_15465 -0.9 -2.1 carboxynorspermidine decarboxylase compare
PS417_20650 -0.9 -3.7 hypothetical protein compare
PS417_15090 -0.9 -1.2 hypothetical protein compare
PS417_18710 -0.9 -3.2 hypothetical protein compare
PS417_00975 -0.9 -1.1 hypothetical protein compare
PS417_05525 -0.8 -2.3 Fis family transcriptional regulator compare
PS417_17945 -0.8 -0.6 hypothetical protein compare
PS417_00510 -0.8 -0.8 membrane protein compare
PS417_08130 -0.8 -1.2 aspartate aminotransferase compare
PS417_02150 -0.8 -3.6 potassium/proton antiporter compare
PS417_08000 -0.8 -3.8 beta-hydroxylase compare
PS417_09420 -0.8 -1.1 LysR family transcriptional regulator compare
PS417_03475 -0.8 -0.9 type III secretion protein compare
PS417_27025 -0.8 -3.7 DNA-binding protein compare
PS417_04475 -0.8 -2.7 hypothetical protein compare
PS417_08435 -0.8 -1.1 pilus assembly protein PilZ compare
PS417_04685 -0.8 -2.7 histidine kinase compare
PS417_04050 -0.8 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_02990 -0.8 -1.8 hypothetical protein compare
PS417_02885 -0.8 -1.3 hypothetical protein compare
PS417_19505 -0.8 -1.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_28140 -0.8 -1.7 asparaginase compare
PS417_01195 -0.8 -1.1 RNA-binding protein S4 compare
PS417_05510 -0.8 -2.5 alpha/beta hydrolase compare
PS417_07565 -0.8 -1.5 hypothetical protein compare
PS417_22445 -0.8 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_16510 -0.8 -1.3 Clp protease ClpX compare
PS417_24500 -0.8 -2.4 DEAD/DEAH box helicase compare
PS417_17735 -0.8 -1.6 LacI family transcriptional regulator compare
PS417_06710 -0.8 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_11195 -0.8 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_22565 -0.8 -0.5 formyltetrahydrofolate deformylase compare
PS417_13515 -0.8 -2.8 hypothetical protein compare
PS417_15105 -0.8 -3.5 membrane protein compare
PS417_22660 -0.8 -1.7 hypothetical protein compare
PS417_04875 -0.8 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_03005 -0.8 -3.7 arginine decarboxylase compare
PS417_02975 -0.8 -2.7 3-dehydroquinate dehydratase compare
PS417_20930 -0.8 -2.9 50S rRNA methyltransferase compare
PS417_22895 -0.8 -2.7 tyrosine recombinase XerD compare
PS417_27110 -0.8 -2.3 spermidine/putrescine ABC transporter permease compare
PS417_15085 -0.8 -2.2 ATPase AAA compare
PS417_01340 -0.7 -3.2 agmatine deiminase compare
PS417_21055 -0.7 -1.9 threonyl-tRNA synthetase compare
PS417_10685 -0.7 -3.2 acyl-CoA dehydrogenase compare
PS417_21680 -0.7 -1.3 succinylglutamate desuccinylase compare
PS417_06075 -0.7 -0.9 hypothetical protein compare
PS417_12650 -0.7 -1.3 magnesium transporter compare
PS417_11945 -0.7 -1.4 hypothetical protein compare
PS417_13245 -0.7 -1.9 saccharopine dehydrogenase compare
PS417_03260 -0.7 -0.7 5S ribosomal RNA compare
PS417_06620 -0.7 -1.1 hypothetical protein compare
PS417_03300 -0.7 -1.6 alanine acetyltransferase compare
PS417_24370 -0.7 -0.6 (2Fe-2S)-binding protein compare
PS417_11530 -0.7 -2.4 amidase compare
PS417_19160 -0.7 -2.5 hypothetical protein compare
PS417_01600 -0.7 -2.6 peptidase M23 compare
PS417_13455 -0.7 -1.5 alkaline proteinase inhibitor compare
PS417_27035 -0.7 -1.6 FAD-linked oxidase compare
PS417_25030 -0.7 -1.5 hypothetical protein compare
PS417_18845 -0.7 -1.9 peptidase compare
PS417_21630 -0.7 -1.0 magnesium transporter compare
PS417_17205 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_07170 -0.7 -2.7 hypothetical protein compare
PS417_15235 -0.7 -1.4 short-chain dehydrogenase compare
PS417_19955 -0.7 -1.1 hypothetical protein compare
PS417_06370 -0.7 -0.8 cold-shock protein compare
PS417_13730 -0.7 -1.3 hypothetical protein compare
PS417_19600 -0.7 -0.8 exonuclease compare
PS417_07690 -0.7 -3.2 hypothetical protein compare
PS417_02225 -0.7 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08350 -0.7 -1.3 preprotein translocase subunit TatD compare
PS417_04595 -0.7 -1.2 cell division protein MraZ compare
PS417_03000 -0.7 -2.6 translation initiation factor Sui1 compare
PS417_18425 -0.7 -1.0 sporulation protein compare
PS417_23385 -0.7 -3.8 cytochrome o ubiquinol oxidase subunit I compare


Specific Phenotypes

For 4 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms