Experiment set22IT083 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_02485 -4.3 -6.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27795 -4.0 -1.2 orotate phosphoribosyltransferase compare
PS417_06375 -3.8 -1.1 deoxycytidine triphosphate deaminase compare
PS417_24835 -3.6 -5.6 hypothetical protein compare
PS417_24745 -3.6 -4.0 gamma-glutamyl phosphate reductase compare
PS417_01915 -3.5 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22450 -3.5 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_21515 -3.4 -14.4 transcriptional regulator compare
PS417_13795 -3.3 -8.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_04650 -3.2 -1.3 D-alanine--D-alanine ligase compare
PS417_13805 -3.1 -10.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_02885 -3.0 -3.3 hypothetical protein compare
PS417_14945 -2.9 -7.2 beta-lactamase conserved
PS417_07620 -2.9 -1.7 beta-hexosaminidase compare
PS417_11825 -2.8 -3.2 transcriptional regulator compare
PS417_14065 -2.8 -6.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08125 -2.8 -0.8 prephenate dehydratase compare
PS417_21125 -2.8 -6.1 phosphoadenosine phosphosulfate reductase compare
PS417_14960 -2.7 -14.1 ATPase conserved
PS417_25650 -2.6 -4.6 anhydro-N-acetylmuramic acid kinase compare
PS417_07120 -2.6 -5.6 RNA polymerase sigma-H factor compare
PS417_22570 -2.6 -1.1 H-NS histone compare
PS417_13800 -2.5 -3.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18310 -2.5 -1.7 hypothetical protein compare
PS417_21000 -2.5 -2.7 CrfX protein compare
PS417_16555 -2.5 -2.0 cupin compare
PS417_01605 -2.5 -1.8 phosphoglycerate mutase compare
PS417_13820 -2.4 -5.4 UDP-glucose 6-dehydrogenase compare
PS417_26985 -2.3 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23950 -2.3 -3.0 polynucleotide phosphorylase/polyadenylase compare
PS417_14965 -2.3 -3.5 transcriptional regulator conserved
PS417_12870 -2.3 -1.9 enoyl-CoA hydratase compare
PS417_20785 -2.2 -3.0 transcriptional regulator compare
PS417_04275 -2.2 -11.4 hypothetical protein compare
PS417_25645 -2.2 -5.5 peptidase M23 compare
PS417_13790 -2.2 -4.2 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_20160 -2.2 -3.0 cysteine synthase compare
PS417_16490 -2.2 -1.5 cell division protein FtsK compare
PS417_05595 -2.1 -9.5 ornithine carbamoyltransferase compare
PS417_23915 -2.1 -3.8 pantoate--beta-alanine ligase compare
PS417_27290 -2.1 -2.2 hypothetical protein compare
PS417_27195 -2.1 -1.7 N-acetylglutamate synthase compare
PS417_27245 -2.0 -4.0 aminotransferase DegT compare
PS417_21480 -2.0 -1.6 23S rRNA pseudouridylate synthase compare
PS417_02145 -2.0 -9.7 potassium transporter KefA compare
PS417_04475 -2.0 -3.5 hypothetical protein compare
PS417_04380 -1.9 -1.4 ABC transporter permease compare
PS417_05500 -1.9 -2.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_23770 -1.9 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_27135 -1.9 -1.0 glutamine synthetase compare
PS417_19350 -1.9 -5.6 GTP cyclohydrolase compare
PS417_26730 -1.8 -0.7 pyrroline-5-carboxylate reductase compare
PS417_02880 -1.7 -1.3 copper chaperone compare
PS417_20610 -1.7 -1.3 hypothetical protein compare
PS417_00975 -1.6 -1.7 hypothetical protein compare
PS417_27300 -1.6 -0.9 cell division protein ZapA compare
PS417_22815 -1.6 -5.9 permease compare
PS417_04595 -1.6 -2.0 cell division protein MraZ compare
PS417_22535 -1.6 -4.7 ornithine acetyltransferase compare
PS417_19955 -1.6 -1.9 hypothetical protein compare
PS417_02805 -1.5 -1.8 urease subunit gamma compare
PS417_17610 -1.5 -1.7 AsnC family transcriptional regulator compare
PS417_05510 -1.5 -3.6 alpha/beta hydrolase compare
PS417_15100 -1.5 -2.1 BatB protein compare
PS417_13065 -1.5 -4.5 UDP pyrophosphate phosphatase compare
PS417_08230 -1.5 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27870 -1.5 -3.4 ATP-dependent DNA helicase RecG compare
PS417_20930 -1.5 -6.2 50S rRNA methyltransferase compare
PS417_25790 -1.4 -3.5 aminoglycoside phosphotransferase compare
PS417_26335 -1.4 -1.7 BetI family transcriptional regulator compare
PS417_01945 -1.4 -1.2 nuclease compare
PS417_23995 -1.3 -0.8 preprotein translocase subunit SecG compare
PS417_08365 -1.3 -0.8 hypothetical protein compare
PS417_15095 -1.3 -1.9 hypothetical protein compare
PS417_03560 -1.3 -1.1 GTP-binding protein compare
PS417_08090 -1.3 -0.7 3-oxoacyl-ACP reductase compare
PS417_06730 -1.3 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_02870 -1.3 -5.1 TonB-dependent receptor compare
PS417_03815 -1.3 -1.7 DNA transporter compare
PS417_07950 -1.3 -2.9 MFS transporter compare
PS417_07560 -1.3 -0.9 universal stress protein UspA compare
PS417_02560 -1.3 -1.3 23S rRNA methyltransferase compare
PS417_02895 -1.3 -1.6 precorrin-6Y C5,15-methyltransferase compare
PS417_11705 -1.2 -4.6 cyclic peptide transporter compare
PS417_03705 -1.2 -4.7 2-alkenal reductase compare
PS417_21360 -1.2 -1.0 termination factor Rho compare
PS417_02225 -1.2 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24500 -1.2 -2.1 DEAD/DEAH box helicase compare
PS417_14280 -1.2 -2.5 hypothetical protein compare
PS417_27435 -1.2 -5.6 polyphosphate kinase compare
PS417_26900 -1.2 -1.5 L-cystine transporter tcyP compare
PS417_16080 -1.2 -2.1 AraC family transcriptional regulator compare
PS417_02950 -1.2 -1.7 tRNA-dihydrouridine synthase B compare
PS417_20705 -1.2 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_23025 -1.2 -2.5 murein transglycosylase compare
PS417_28050 -1.2 -2.4 hypothetical protein compare
PS417_07035 -1.2 -5.2 uracil-DNA glycosylase compare
PS417_22445 -1.1 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_26755 -1.1 -1.6 nucleoside-triphosphate diphosphatase compare
PS417_23545 -1.1 -1.4 gamma-glutamyl kinase compare
PS417_27035 -1.1 -2.9 FAD-linked oxidase compare
PS417_02405 -1.1 -2.9 hypothetical protein compare
PS417_01510 -1.1 -1.8 hypothetical protein compare
PS417_22780 -1.1 -2.2 XRE family transcriptional regulator compare
PS417_03380 -1.1 -1.1 hypothetical protein compare
PS417_24265 -1.1 -3.8 ABC transporter ATP-binding protein compare
PS417_16520 -1.1 -1.5 cold-shock protein compare
PS417_00405 -1.1 -5.1 DNA polymerase I compare
PS417_01635 -1.1 -3.0 nitrogen regulation protein NR(I) compare
PS417_09580 -1.0 -2.0 tyrosyl-trna synthetase compare
PS417_15475 -1.0 -2.4 IclR family transcriptional regulator compare
PS417_23250 -1.0 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_05525 -1.0 -2.8 Fis family transcriptional regulator compare
PS417_18710 -1.0 -4.9 hypothetical protein compare
PS417_24525 -1.0 -1.4 nuclease compare
PS417_08025 -1.0 -1.3 acetylornithine aminotransferase compare
PS417_26340 -1.0 -4.0 betaine-aldehyde dehydrogenase compare
PS417_19095 -1.0 -1.2 hypothetical protein compare
PS417_16565 -1.0 -3.5 secretin compare
PS417_25315 -1.0 -2.7 membrane protein compare
PS417_22565 -1.0 -0.6 formyltetrahydrofolate deformylase compare
PS417_01715 -1.0 -1.0 hypothetical protein compare
PS417_24030 -1.0 -1.4 MFS transporter compare
PS417_09930 -1.0 -1.4 hypothetical protein compare
PS417_27945 -1.0 -1.4 type VI secretion protein ImpA compare
PS417_01620 -1.0 -1.7 preprotein translocase subunit SecB compare
PS417_06845 -1.0 -1.0 lipoprotein compare
PS417_07820 -1.0 -1.4 transposase compare
PS417_20650 -1.0 -4.7 hypothetical protein compare
PS417_21270 -0.9 -1.0 translation initiation factor 2 compare
PS417_06710 -0.9 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_27705 -0.9 -1.0 amino acid dehydrogenase compare
PS417_21830 -0.9 -1.2 TetR family transcriptional regulator compare
PS417_06245 -0.9 -1.1 zinc metallopeptidase RseP compare
PS417_05505 -0.9 -3.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_07170 -0.9 -3.2 hypothetical protein compare
PS417_20080 -0.9 -2.3 peptidase P60 compare
PS417_05830 -0.9 -1.8 hypothetical protein compare
PS417_13780 -0.9 -2.4 integrase compare
PS417_16810 -0.9 -1.7 acyl-CoA dehydrogenase compare
PS417_22250 -0.9 -3.6 pseudouridine synthase compare
PS417_02975 -0.9 -1.9 3-dehydroquinate dehydratase compare
PS417_14540 -0.9 -1.1 cytochrome C oxidase subunit III compare
PS417_13785 -0.9 -1.4 hypothetical protein compare
PS417_28220 -0.9 -1.6 LysR family transcriptional regulator compare
PS417_00345 -0.9 -1.3 copper-binding protein compare
PS417_23380 -0.9 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_06415 -0.9 -2.7 ABC transporter substrate-binding protein compare
PS417_03005 -0.9 -3.5 arginine decarboxylase compare
PS417_19605 -0.9 -1.1 hypothetical protein compare
PS417_21630 -0.9 -1.1 magnesium transporter compare
PS417_20880 -0.9 -1.6 GntR family transcriptional regulator compare
PS417_19945 -0.9 -2.2 MarR family transcriptional regulator compare
PS417_27075 -0.9 -1.7 thiol-disulfide isomerase compare
PS417_00370 -0.9 -0.8 hypothetical protein compare
PS417_18130 -0.9 -2.4 ABC transporter substrate-binding protein compare
PS417_01340 -0.9 -2.5 agmatine deiminase compare
PS417_24705 -0.9 -2.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_02555 -0.8 -5.4 exoribonuclease R compare
PS417_05140 -0.8 -1.3 dipicolinate synthase compare
PS417_26260 -0.8 -1.3 hypothetical protein compare
PS417_15775 -0.8 -1.8 short-chain dehydrogenase compare
PS417_08000 -0.8 -4.9 beta-hydroxylase compare
PS417_02415 -0.8 -2.2 phosphoserine phosphatase compare
PS417_04115 -0.8 -2.6 alpha/beta hydrolase compare
PS417_28350 -0.8 -3.4 fatty acid methyltransferase compare
PS417_08620 -0.8 -0.7 hypothetical protein compare
PS417_23385 -0.8 -3.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_11755 -0.8 -1.7 diacetyl reductase compare
PS417_01095 -0.8 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_01965 -0.8 -1.1 fimbriae biosynthesis protein compare
PS417_05125 -0.8 -1.7 sugar ABC transporter substrate-binding protein compare
PS417_26990 -0.8 -0.5 RNA pyrophosphohydrolase compare
PS417_13985 -0.8 -2.1 dehydrogenase compare
PS417_09335 -0.8 -1.3 HAD family hydrolase compare
PS417_18495 -0.8 -1.4 hypothetical protein compare
PS417_07160 -0.8 -3.4 glycine cleavage system protein R compare
PS417_27865 -0.8 -1.6 LysR family transcriptional regulator compare
PS417_05910 -0.8 -4.9 glucan biosynthesis protein D compare
PS417_10040 -0.8 -0.7 MFS transporter compare
PS417_02150 -0.8 -3.3 potassium/proton antiporter compare
PS417_23820 -0.8 -2.5 hypothetical protein compare
PS417_26120 -0.8 -1.4 hypothetical protein compare
PS417_11180 -0.8 -1.4 TetR family transcriptional regulator compare
PS417_18095 -0.8 -1.9 iron-dicitrate transporter subunit FecD compare
PS417_04725 -0.8 -3.1 chemotaxis protein CheW compare
PS417_10955 -0.8 -2.0 porin compare
PS417_04525 -0.8 -3.1 16S rRNA methyltransferase compare
PS417_12565 -0.8 -1.1 2-dehydro-3-deoxygluconokinase compare
PS417_00085 -0.8 -1.4 16S rRNA methyltransferase compare
PS417_12820 -0.8 -1.7 hypothetical protein compare
PS417_22195 -0.8 -2.9 peptidase compare
PS417_04420 -0.8 -4.2 histidinol dehydrogenase compare
PS417_03260 -0.8 -0.8 5S ribosomal RNA compare
PS417_04800 -0.8 -1.2 alginate O-acetyltransferase compare
PS417_00390 -0.8 -3.6 ABC transporter substrate-binding protein compare
PS417_19215 -0.8 -3.2 polyphosphate kinase compare
PS417_05040 -0.8 -1.8 amino acid dehydrogenase compare
PS417_14835 -0.8 -1.6 amidase compare
PS417_16195 -0.7 -0.6 AraC family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms