Experiment set22IT082 for Pseudomonas simiae WCS417

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_24835 -6.5 -5.9 hypothetical protein compare
PS417_13820 -5.0 -8.6 UDP-glucose 6-dehydrogenase compare
PS417_09235 -4.6 -1.3 molecular chaperone compare
PS417_21515 -4.1 -15.8 transcriptional regulator compare
PS417_21480 -4.1 -1.9 23S rRNA pseudouridylate synthase compare
PS417_27795 -4.0 -1.1 orotate phosphoribosyltransferase compare
PS417_14065 -4.0 -12.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13795 -3.9 -9.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_06375 -3.8 -1.0 deoxycytidine triphosphate deaminase compare
PS417_14945 -3.7 -7.1 beta-lactamase conserved
PS417_27245 -3.6 -5.2 aminotransferase DegT compare
PS417_06945 -3.5 -1.4 membrane protein compare
PS417_14960 -3.4 -12.0 ATPase conserved
PS417_13805 -3.4 -10.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_11825 -3.3 -2.7 transcriptional regulator compare
PS417_02485 -3.3 -5.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_04650 -3.1 -1.2 D-alanine--D-alanine ligase compare
PS417_14965 -3.1 -4.6 transcriptional regulator conserved
PS417_07120 -3.0 -6.7 RNA polymerase sigma-H factor compare
PS417_13800 -3.0 -3.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26985 -3.0 -7.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21125 -2.9 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_23915 -2.9 -4.1 pantoate--beta-alanine ligase compare
PS417_06245 -2.8 -1.9 zinc metallopeptidase RseP compare
PS417_04275 -2.7 -14.3 hypothetical protein compare
PS417_24745 -2.6 -3.5 gamma-glutamyl phosphate reductase compare
PS417_26850 -2.6 -1.0 twin-arginine translocation pathway signal protein compare
PS417_13790 -2.6 -3.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_20160 -2.6 -3.7 cysteine synthase compare
PS417_18310 -2.6 -1.6 hypothetical protein compare
PS417_16490 -2.5 -1.2 cell division protein FtsK compare
PS417_24705 -2.5 -3.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_07620 -2.4 -1.9 beta-hexosaminidase compare
PS417_27195 -2.4 -1.6 N-acetylglutamate synthase compare
PS417_01920 -2.4 -0.8 ATP-dependent protease subunit HslV compare
PS417_26990 -2.4 -0.9 RNA pyrophosphohydrolase compare
PS417_08365 -2.2 -1.0 hypothetical protein compare
PS417_02145 -2.2 -10.1 potassium transporter KefA compare
PS417_28050 -2.2 -4.2 hypothetical protein compare
PS417_23545 -2.2 -1.5 gamma-glutamyl kinase compare
PS417_22535 -2.1 -6.7 ornithine acetyltransferase compare
PS417_19350 -2.1 -4.6 GTP cyclohydrolase compare
PS417_05595 -2.1 -6.7 ornithine carbamoyltransferase compare
PS417_01915 -2.0 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22815 -2.0 -4.8 permease compare
PS417_21000 -2.0 -2.3 CrfX protein compare
PS417_25650 -1.9 -3.0 anhydro-N-acetylmuramic acid kinase compare
PS417_04380 -1.9 -1.0 ABC transporter permease compare
PS417_19955 -1.8 -1.7 hypothetical protein compare
PS417_26730 -1.8 -0.7 pyrroline-5-carboxylate reductase compare
PS417_27870 -1.8 -3.3 ATP-dependent DNA helicase RecG compare
PS417_15975 -1.7 -1.7 glutamate carboxypeptidase compare
PS417_02560 -1.7 -1.6 23S rRNA methyltransferase compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_17215 -1.7 -2.0 peptidylprolyl isomerase compare
PS417_16520 -1.7 -1.4 cold-shock protein compare
PS417_20930 -1.7 -7.0 50S rRNA methyltransferase compare
PS417_25790 -1.7 -4.2 aminoglycoside phosphotransferase compare
PS417_07035 -1.7 -7.6 uracil-DNA glycosylase compare
PS417_00085 -1.7 -2.3 16S rRNA methyltransferase compare
PS417_08590 -1.7 -2.0 hypothetical protein compare
PS417_23025 -1.7 -5.3 murein transglycosylase compare
PS417_03705 -1.6 -6.5 2-alkenal reductase compare
PS417_02975 -1.6 -3.4 3-dehydroquinate dehydratase compare
PS417_05500 -1.6 -2.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_18545 -1.6 -2.3 cell division protein compare
PS417_03560 -1.5 -1.1 GTP-binding protein compare
PS417_14515 -1.5 -1.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_25645 -1.5 -3.0 peptidase M23 compare
PS417_20785 -1.5 -2.6 transcriptional regulator compare
PS417_23950 -1.5 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_27865 -1.5 -2.0 LysR family transcriptional regulator compare
PS417_02365 -1.5 -2.9 hypothetical protein compare
PS417_00195 -1.5 -1.8 hypothetical protein compare
PS417_02870 -1.5 -5.5 TonB-dependent receptor compare
PS417_27315 -1.5 -1.2 hypothetical protein compare
PS417_04595 -1.5 -1.8 cell division protein MraZ compare
PS417_03380 -1.4 -1.0 hypothetical protein compare
PS417_02880 -1.4 -1.1 copper chaperone compare
PS417_16515 -1.4 -1.3 Clp protease ClpS compare
PS417_26335 -1.4 -2.5 BetI family transcriptional regulator compare
PS417_21655 -1.4 -1.1 aspartate kinase compare
PS417_07470 -1.4 -1.2 hypothetical protein compare
PS417_08000 -1.4 -5.5 beta-hydroxylase compare
PS417_03260 -1.3 -1.1 5S ribosomal RNA compare
PS417_09335 -1.3 -1.8 HAD family hydrolase compare
PS417_21465 -1.3 -3.5 septum formation inhibitor Maf compare
PS417_18710 -1.3 -4.2 hypothetical protein compare
PS417_08090 -1.3 -0.7 3-oxoacyl-ACP reductase compare
PS417_07170 -1.3 -2.6 hypothetical protein compare
PS417_22250 -1.3 -4.3 pseudouridine synthase compare
PS417_26805 -1.3 -0.9 cell division protein FtsE compare
PS417_16080 -1.3 -2.5 AraC family transcriptional regulator compare
PS417_12515 -1.3 -2.2 lactate dehydrogenase compare
PS417_00045 -1.3 -1.6 glycerol acyltransferase compare
PS417_26605 -1.3 -0.7 malonate decarboxylase subunit beta compare
PS417_11705 -1.3 -4.7 cyclic peptide transporter compare
PS417_19190 -1.3 -2.0 BolA family transcriptional regulator compare
PS417_23250 -1.3 -4.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27110 -1.2 -3.4 spermidine/putrescine ABC transporter permease compare
PS417_05235 -1.2 -1.9 peptidase inhibitor I42 compare
PS417_20650 -1.2 -5.5 hypothetical protein compare
PS417_02475 -1.2 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_04475 -1.2 -2.8 hypothetical protein compare
PS417_01115 -1.2 -1.6 serine acetyltransferase compare
PS417_21710 -1.2 -3.2 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_15100 -1.2 -1.9 BatB protein compare
PS417_27800 -1.2 -0.8 exodeoxyribonuclease III compare
PS417_10245 -1.2 -1.1 hypothetical protein compare
PS417_02555 -1.2 -6.8 exoribonuclease R compare
PS417_22195 -1.2 -4.8 peptidase compare
PS417_23775 -1.2 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_04290 -1.2 -3.3 hypothetical protein compare
PS417_02150 -1.2 -4.7 potassium/proton antiporter compare
PS417_22445 -1.2 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_12535 -1.1 -1.5 nitrilase compare
PS417_24500 -1.1 -2.1 DEAD/DEAH box helicase compare
PS417_11000 -1.1 -1.9 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_10405 -1.1 -0.9 filamentous hemagglutinin compare
PS417_18425 -1.1 -1.4 sporulation protein compare
PS417_26770 -1.1 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_05505 -1.1 -3.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_16510 -1.1 -1.7 Clp protease ClpX compare
PS417_27180 -1.1 -2.0 peroxidase compare
PS417_05545 -1.1 -2.8 amino acid ABC transporter ATP-binding protein compare
PS417_24525 -1.1 -1.6 nuclease compare
PS417_02405 -1.1 -4.6 hypothetical protein compare
PS417_13510 -1.1 -0.9 polyketide cyclase compare
PS417_26685 -1.1 -1.5 hypothetical protein compare
PS417_20700 -1.1 -4.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_13065 -1.1 -1.8 UDP pyrophosphate phosphatase compare
PS417_02805 -1.1 -1.2 urease subunit gamma compare
PS417_24155 -1.1 -1.0 ATP-binding protein compare
PS417_13785 -1.1 -2.3 hypothetical protein compare
PS417_24560 -1.0 -1.8 ferrous iron transporter compare
PS417_11175 -1.0 -1.5 AraC family transcriptional regulator compare
PS417_28230 -1.0 -1.4 transcriptional regulator compare
PS417_13010 -1.0 -1.4 alpha/beta hydrolase compare
PS417_03005 -1.0 -3.4 arginine decarboxylase compare
PS417_00355 -1.0 -1.5 metal ABC transporter permease compare
PS417_15105 -1.0 -3.8 membrane protein compare
PS417_06675 -1.0 -2.2 ATP-dependent helicase compare
PS417_08335 -1.0 -1.4 hypothetical protein compare
PS417_06780 -1.0 -1.8 TetR family transcriptional regulator compare
PS417_12660 -1.0 -1.2 hypothetical protein compare
PS417_05910 -1.0 -5.8 glucan biosynthesis protein D compare
PS417_22450 -1.0 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_18195 -1.0 -2.8 3-(3-hydroxyphenyl)propionate hydroxylase compare
PS417_18100 -1.0 -2.3 iron ABC transporter compare
PS417_11275 -1.0 -1.9 general secretion pathway protein GspG compare
PS417_02105 -0.9 -1.6 acyl carrier protein compare
PS417_20985 -0.9 -0.6 porin compare
PS417_05555 -0.9 -1.7 amino acid ABC transporter permease compare
PS417_24790 -0.9 -2.4 hypothetical protein compare
PS417_20715 -0.9 -1.3 cytochrome Cbb3 compare
PS417_04985 -0.9 -2.8 ketosteroid isomerase compare
PS417_23330 -0.9 -1.9 hypothetical protein compare
PS417_20610 -0.9 -0.9 hypothetical protein compare
PS417_10985 -0.9 -0.7 NADH:flavin oxidoreductase compare
PS417_01635 -0.9 -3.4 nitrogen regulation protein NR(I) compare
PS417_09865 -0.9 -1.3 hypothetical protein compare
PS417_04340 -0.9 -2.4 ribosome hibernation promoting factor HPF compare
PS417_05650 -0.9 -1.2 leucyl-tRNA synthetase compare
PS417_12910 -0.9 -1.3 alanine racemase compare
PS417_16255 -0.9 -1.2 RNA polymerase sigma factor compare
PS417_24125 -0.9 -2.2 hypothetical protein compare
PS417_03000 -0.9 -2.1 translation initiation factor Sui1 compare
PS417_00870 -0.9 -1.8 hypothetical protein compare
PS417_02915 -0.9 -2.9 precorrin-3B C17-methyltransferase compare
PS417_08220 -0.9 -0.4 epimerase compare
PS417_19835 -0.9 -1.1 flagellar biosynthesis protein FliS compare
PS417_04070 -0.9 -4.2 porin compare
PS417_23170 -0.9 -1.3 FeS assembly protein IscX compare
PS417_11830 -0.9 -1.4 membrane protein compare
PS417_26900 -0.9 -1.1 L-cystine transporter tcyP compare
PS417_00030 -0.9 -1.1 hypothetical protein compare
PS417_20705 -0.8 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_25315 -0.8 -2.4 membrane protein compare
PS417_12935 -0.8 -1.8 RNA polymerase sigma factor compare
PS417_21625 -0.8 -0.7 DNA-binding protein compare
PS417_16160 -0.8 -1.9 ABC transporter substrate-binding protein compare
PS417_02630 -0.8 -1.3 NAD synthetase compare
PS417_14655 -0.8 -0.7 lysine transporter LysE compare
PS417_18105 -0.8 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_23995 -0.8 -0.5 preprotein translocase subunit SecG compare
PS417_01030 -0.8 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_04015 -0.8 -2.7 choline ABC transporter permease compare
PS417_23385 -0.8 -3.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_05510 -0.8 -1.9 alpha/beta hydrolase compare
PS417_22565 -0.8 -0.5 formyltetrahydrofolate deformylase compare
PS417_00865 -0.8 -2.5 hypothetical protein compare
PS417_28145 -0.8 -1.3 AraC family transcriptional regulator compare
PS417_26340 -0.8 -2.6 betaine-aldehyde dehydrogenase compare
PS417_26760 -0.8 -2.8 oxidase compare
PS417_19600 -0.8 -0.6 exonuclease compare
PS417_08195 -0.8 -3.3 hypothetical protein compare
PS417_24615 -0.8 -0.7 hypothetical protein compare
PS417_09420 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_21760 -0.8 -1.0 hypothetical protein compare
PS417_14835 -0.8 -2.6 amidase compare


Specific Phenotypes

For 12 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas simiae WCS417

For stress Polymyxin B sulfate across organisms