| | gene | name | fitness | t score | description | |
|---|
| b3842 | rfaH | -5.8 | -4.0 | transcriptional activator RfaH (NCBI) | compare |
| b3630 | rfaP | -4.1 | -8.8 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3627 | rfaI | -4.0 | -7.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1882 | cheY | -3.8 | -1.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b2699 | recA | -3.2 | -2.2 | recombinase A (NCBI) | compare |
| b0142 | folK | -3.2 | -1.3 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b0630 | lipB | -3.0 | -2.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3977 | tyrU | -2.6 | -1.5 | tRNA-Tyr (NCBI) | compare |
| b3628 | rfaB | -2.6 | -11.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b0200 | gmhB | -2.5 | -1.7 | hypothetical protein (NCBI) | compare |
| b2567 | rnc | -2.4 | -1.6 | ribonuclease III (NCBI) | compare |
| b2168 | fruK | -2.4 | -2.9 | 1-phosphofructokinase (NCBI) | compare |
| b1865 | nudB | -2.3 | -1.8 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0741 | pal | -2.2 | -5.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3500 | gor | -2.2 | -2.8 | glutathione reductase (NCBI) | compare |
| b1292 | sapC | -2.2 | -4.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3811 | xerC | -2.1 | -2.0 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b3863 | polA | -2.1 | -1.4 | DNA polymerase I (NCBI) | compare |
| b1951 | rcsA | -2.0 | -1.9 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b3620 | rfaF | -2.0 | -6.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0053 | surA | -1.9 | -7.0 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b4676 | yoaK | -1.9 | -1.0 | expressed protein (RefSeq) | compare |
| b2830 | nudH | -1.9 | -2.5 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1150 | ymfR | -1.9 | -1.4 | e14 prophage; predicted protein (NCBI) | compare |
| b0439 | lon | -1.8 | -6.6 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2935 | tktA | -1.7 | -2.0 | transketolase 1, thiamin-binding (NCBI) | compare |
| b0738 | tolR | -1.7 | -3.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0222 | lpcA | -1.7 | -3.7 | phosphoheptose isomerase (NCBI) | compare |
| b1236 | galU | -1.7 | -6.8 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1291 | sapD | -1.7 | -1.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0888 | trxB | -1.7 | -4.6 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b1290 | sapF | -1.7 | -2.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4522 | yciX_1 | -1.6 | -3.8 | hypothetical protein (NCBI) | compare |
| b2894 | xerD | -1.6 | -1.5 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4177 | purA | -1.6 | -1.8 | adenylosuccinate synthetase (NCBI) | compare |
| b4503 | yafF | -1.6 | -1.2 | no description | compare |
| b4375 | prfC | -1.5 | -5.8 | peptide chain release factor 3 (NCBI) | compare |
| b3778 | rep | -1.5 | -7.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3169 | nusA | -1.5 | -3.2 | transcription elongation factor NusA (NCBI) | compare |
| b0740 | tolB | -1.5 | -4.8 | translocation protein TolB precursor (NCBI) | compare |
| b3613 | yibP | -1.5 | -4.7 | putative membrane protein (VIMSS) | compare |
| b2038 | rfbC | -1.5 | -6.0 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b2297 | pta | -1.5 | -1.0 | phosphate acetyltransferase (NCBI) | compare |
| b2846 | yqeH | -1.5 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4699 | fnrS | -1.4 | -0.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4048 | yjbM | -1.4 | -1.7 | hypothetical protein (NCBI) | compare |
| b1855 | lpxM | -1.4 | -6.1 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4202 | rpsR | -1.4 | -2.0 | 30S ribosomal protein S18 (NCBI) | compare |
| b2040 | rfbD | -1.4 | -8.9 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b2318 | truA | -1.4 | -2.9 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3290 | trkA | -1.3 | -2.8 | potassium transporter peripheral membrane component (NCBI) | compare |
| b2820 | recB | -1.3 | -1.7 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3619 | rfaD | -1.3 | -4.5 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0658 | ybeX | -1.3 | -0.9 | predicteed ion transport (NCBI) | compare |
| b4171 | miaA | -1.3 | -3.3 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0114 | aceE | -1.3 | -1.5 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b3052 | rfaE | -1.3 | -5.7 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3839 | tatC | -1.3 | -5.5 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0737 | tolQ | -1.3 | -2.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3629 | rfaS | -1.3 | -3.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4515 | ybgT | -1.2 | -1.9 | hypothetical protein (NCBI) | compare |
| b1351 | racC | -1.2 | -0.8 | Rac prophage; predicted protein (NCBI) | compare |
| b3741 | gidA | -1.2 | -4.5 | glucose-inhibited division protein A (NCBI) | compare |
| b0767 | ybhE | -1.2 | -4.6 | 6-phosphogluconolactonase (NCBI) | compare |
| b1497 | b1497 | -1.2 | -0.8 | putative enzyme (VIMSS) | compare |
| b4535 | yniD | -1.2 | -1.7 | predicted protein (RefSeq) | compare |
| b0088 | murD | -1.2 | -2.0 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1165 | ymgA | -1.2 | -0.8 | hypothetical protein (NCBI) | compare |
| b0739 | tolA | -1.2 | -2.8 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b2620 | smpB | -1.2 | -1.7 | SsrA-binding protein (NCBI) | compare |
| b4042 | dgkA | -1.2 | -2.3 | diacylglycerol kinase (NCBI) | compare |
| b1040 | csgD | -1.2 | -1.5 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1690 | ydiM | -1.1 | -2.6 | predicted transporter (NCBI) | compare |
| b2330 | yfcB | -1.1 | -1.9 | putative adenine-specific methylase (VIMSS) | compare |
| b3162 | deaD | -1.1 | -4.5 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0049 | apaH | -1.1 | -2.8 | diadenosinetetraphosphatase (NCBI) | compare |
| b2569 | lepA | -1.1 | -3.8 | GTP-binding protein LepA (NCBI) | compare |
| b1293 | sapB | -1.1 | -1.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0890 | ftsK | -1.1 | -4.4 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1600 | mdtJ | -1.1 | -1.9 | multidrug efflux system transporter (NCBI) | compare |
| b4239 | treC | -1.1 | -3.1 | trehalose-6-P hydrolase (NCBI) | compare |
| b1499 | ydeO | -1.1 | -0.5 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1850 | eda | -1.1 | -2.4 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1084 | rne | -1.1 | -4.4 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b4494 | arpB | -1.1 | -2.3 | no description | compare |
| b3398 | yrfF | -1.1 | -2.9 | predicted inner membrane protein (NCBI) | compare |
| b3405 | ompR | -1.1 | -4.1 | osmolarity response regulator (NCBI) | compare |
| b1576 | ydfD | -1.1 | -0.5 | Qin prophage; predicted protein (NCBI) | compare |
| b3426 | glpD | -1.0 | -4.2 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b1545 | pinQ | -1.0 | -0.3 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b1363 | trkG | -1.0 | -1.2 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b4520 | ymgF | -1.0 | -1.9 | hypothetical protein (NCBI) | compare |
| b1409 | ynbB | -1.0 | -1.4 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b1677 | lpp | -1.0 | -2.7 | murein lipoprotein (NCBI) | compare |
| b3623 | rfaK | -1.0 | -2.0 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1347 | ydaC | -1.0 | -0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b4146 | yjeK | -1.0 | -2.7 | predicted lysine aminomutase (NCBI) | compare |
| b1025 | ycdT | -1.0 | -1.5 | predicted diguanylate cyclase (NCBI) | compare |
| b3621 | rfaC | -1.0 | -3.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1058 | yceO | -1.0 | -0.5 | hypothetical protein (NCBI) | compare |
| b4179 | vacB | -1.0 | -4.4 | putative enzyme (VIMSS) | compare |
| b3916 | pfkA | -1.0 | -2.6 | 6-phosphofructokinase (NCBI) | compare |
| b4603 | rseX | -1.0 | -0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3870 | glnA | -1.0 | -2.6 | glutamine synthetase (NCBI) | compare |
| b3026 | qseC | -1.0 | -3.5 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3806 | cyaA | -0.9 | -4.0 | adenylate cyclase (NCBI) | compare |
| b0720 | gltA | -0.9 | -5.0 | citrate synthase (NCBI) | compare |
| b3387 | dam | -0.9 | -5.9 | DNA adenine methylase (NCBI) | compare |
| b1286 | rnb | -0.9 | -1.9 | exoribonuclease II (NCBI) | compare |
| b2248 | yfaX | -0.9 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3844 | fre | -0.9 | -3.6 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2055 | wcaE | -0.9 | -0.5 | predicted glycosyl transferase (NCBI) | compare |
| b3626 | rfaJ | -0.9 | -3.6 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b2175 | spr | -0.9 | -2.5 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1863 | ruvC | -0.8 | -1.6 | Holliday junction resolvase (NCBI) | compare |
| b1361 | ydaW | -0.8 | -0.5 | orf, hypothetical protein (VIMSS) | compare |
| b3781 | trxA | -0.8 | -2.5 | thioredoxin 1 (VIMSS) | compare |
| b1862 | yebB | -0.8 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4702 | mgtL | -0.8 | -1.5 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1594 | dgsA | -0.8 | -2.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1048 | mdoG | -0.8 | -3.7 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1536 | ydeI | -0.8 | -1.0 | hypothetical protein (NCBI) | compare |
| b4155 | yjeA | -0.8 | -0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b4513 | kdpF | -0.8 | -1.9 | potassium ion accessory transporter subunit (NCBI) | compare |
| b0858 | ybjO | -0.8 | -1.9 | predicted inner membrane protein (NCBI) | compare |
| b2947 | gshB | -0.8 | -2.7 | glutathione synthetase (NCBI) | compare |
| b1167 | ymgC | -0.8 | -0.4 | hypothetical protein (NCBI) | compare |
| b1551 | b1551 | -0.8 | -0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2285 | nuoE | -0.8 | -1.7 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3414 | gntY | -0.8 | -2.9 | predicted gluconate transport associated protein (NCBI) | compare |
| b2276 | nuoN | -0.8 | -3.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b3725 | pstB | -0.8 | -1.0 | phosphate transporter subunit (NCBI) | compare |
| b0814 | ompX | -0.8 | -2.1 | outer membrane protein X (NCBI) | compare |
| b2528 | iscA | -0.8 | -1.1 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b2352 | yfdI | -0.8 | -0.7 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b1762 | b1762 | -0.8 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2446 | yffO | -0.8 | -1.2 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1192 | ldcA | -0.8 | -3.0 | L,D-carboxypeptidase A (NCBI) | compare |
| b0018 | mokC | -0.8 | -1.0 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b2288 | nuoA | -0.8 | -2.3 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b2912 | ygfA | -0.8 | -1.7 | putative ligase (VIMSS) | compare |
| b3386 | rpe | -0.8 | -0.7 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b3068 | ygjF | -0.7 | -2.3 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b0438 | clpX | -0.7 | -3.5 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1691 | ydiN | -0.7 | -2.7 | predicted transporter (RefSeq) | compare |
| b0549 | ybcO | -0.7 | -2.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2822 | recC | -0.7 | -3.3 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b1556 | b1556 | -0.7 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0676 | nagC | -0.7 | -3.5 | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) | compare |
| b1931 | yedK | -0.7 | -2.3 | hypothetical protein (NCBI) | compare |
| b3807 | cyaY | -0.7 | -3.1 | frataxin-like protein (NCBI) | compare |
| b3794 | rffM | -0.7 | -3.7 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2279 | nuoK | -0.7 | -1.6 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3838 | tatB | -0.7 | -3.6 | sec-independent translocase (NCBI) | compare |
| b3973 | birA | -0.7 | -1.8 | biotin--protein ligase (NCBI) | compare |
| b2188 | yejM | -0.7 | -4.6 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2071 | yegJ | -0.7 | -1.2 | hypothetical protein (NCBI) | compare |
| b0218 | yafU | -0.7 | -2.0 | predicted inner membrane protein (RefSeq) | compare |
| b1062 | pyrC | -0.7 | -3.4 | dihydroorotase (NCBI) | compare |
| b4497 | yeeL | -0.7 | -1.1 | no description | compare |
| b3631 | rfaG | -0.7 | -5.7 | glucosyltransferase I (NCBI) | compare |
| b3790 | rffC | -0.7 | -2.9 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4481 | rffT | -0.7 | -3.3 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3849 | trkH | -0.7 | -4.8 | potassium transporter (NCBI) | compare |
| b3979 | thrT | -0.7 | -0.4 | tRNA-Thr (NCBI) | compare |
| b2372 | yfdV | -0.7 | -3.0 | predicted transporter (NCBI) | compare |
| b3027 | ygiZ | -0.7 | -0.4 | conserved inner membrane protein (NCBI) | compare |
| b1049 | mdoH | -0.7 | -4.4 | glucosyltransferase MdoH (NCBI) | compare |
| b4594 | ymgJ | -0.7 | -1.8 | hypothetical protein (RefSeq) | compare |
| b0364 | yaiS | -0.7 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1121 | ycfZ | -0.7 | -1.5 | predicted inner membrane protein (NCBI) | compare |
| b1612 | fumA | -0.7 | -2.6 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b3205 | yhbJ | -0.7 | -2.4 | hypothetical protein (NCBI) | compare |
| b3071 | yqjI | -0.7 | -2.2 | predicted transcriptional regulator (NCBI) | compare |
| b2564 | pdxJ | -0.7 | -2.0 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b2209 | eco | -0.7 | -1.7 | ecotin precursor (NCBI) | compare |
| b0249 | ykfF | -0.7 | -1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0723 | sdhA | -0.7 | -4.5 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b1074 | flgC | -0.6 | -1.2 | flagellar basal-body rod protein C (NCBI) | compare |
| b2498 | upp | -0.6 | -1.7 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b3098 | yqjD | -0.6 | -2.3 | hypothetical protein (NCBI) | compare |
| b1579 | intQ | -0.6 | -2.4 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b1999 | yeeP | -0.6 | -3.0 | putative histone (VIMSS) | compare |
| b1182 | hlyE | -0.6 | -0.6 | hemolysin E (VIMSS) | compare |
| b1176 | minC | -0.6 | -1.5 | septum formation inhibitor (NCBI) | compare |
| b0928 | aspC | -0.6 | -3.8 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b1104 | ycfL | -0.6 | -1.4 | hypothetical protein (NCBI) | compare |
| b1827 | kdgR | -0.6 | -1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2512 | yfgL | -0.6 | -3.6 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1235 | rssB | -0.6 | -2.9 | response regulator of RpoS (NCBI) | compare |
| b1685 | ydiH | -0.6 | -0.9 | predicted protein (RefSeq) | compare |
| b1921 | fliZ | -0.6 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3042 | b3042 | -0.6 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2906 | visC | -0.6 | -3.4 | hypothetical protein (NCBI) | compare |
| b3935 | priA | -0.6 | -1.2 | primosome assembly protein PriA (NCBI) | compare |
| b1505 | ydeT | -0.6 | -1.0 | hypothetical protein (RefSeq) | compare |
| b2215 | ompC | -0.6 | -3.6 | outer membrane porin protein C (NCBI) | compare |
| b0991 | ymcE | -0.6 | -2.3 | cold shock gene (NCBI) | compare |
| b1673 | ydhV | -0.6 | -2.8 | predicted oxidoreductase (NCBI) | compare |
| b3609 | secB | -0.6 | -2.8 | export protein SecB (NCBI) | compare |