Experiment set22IT077 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_4; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -5.3 -7.3 tryptophan synthase alpha chain compare
PP_5097 -5.2 -17.7 homoserine O-acetyltransferase compare
PP_5098 -5.0 -11.0 methionine biosynthesis protein MetW compare
PP_0290 -5.0 -8.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.7 -9.0 tryptophan synthase beta chain compare
PP_0406 -4.7 -3.2 Nucleotidyltransferase family protein compare
PP_0289 -4.4 -10.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.4 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4696 -4.3 -5.9 Nitrogen regulation protein NR(I) compare
PP_2168 -4.3 -12.8 Transaldolase compare
PP_0292 -4.3 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2433 -4.2 -3.9 conserved protein of unknown function compare
PP_2371 -4.1 -8.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -4.1 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -4.0 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -4.0 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4678 -3.9 -14.7 Ketol-acid reductoisomerase compare
PP_0966 -3.8 -8.8 Histidinol dehydrogenase compare
PP_5128 -3.8 -8.5 Dihydroxy-acid dehydratase compare
PP_0420 -3.7 -9.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -3.7 -6.3 Indole-3-glycerol phosphate synthase compare
PP_0965 -3.5 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2001 -3.5 -7.3 O-succinylhomoserine sulfhydrylase compare
PP_0967 -3.4 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4517 -3.3 -3.8 conserved protein of unknown function compare
PP_2402 -3.3 -3.2 putative Sensor histidine kinase compare
PP_0001 -3.3 -2.7 probable chromosome-partitioning protein compare
PP_4874 -3.2 -2.1 50S ribosomal protein L9 compare
PP_4680 -3.1 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3999 -3.1 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3511 -3.1 -7.6 Branched-chain-amino-acid aminotransferase compare
PP_2328 -3.1 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_1022 -2.9 -6.2 glucose 6-phosphate-1-dehydrogenase compare
PP_2327 -2.9 -6.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4890 -2.9 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -2.8 -13.8 Anthranilate synthase component 1 compare
PP_1088 -2.8 -9.6 Argininosuccinate synthase compare
PP_4785 -2.6 -7.0 conserved exported protein of unknown function compare
PP_5303 -2.6 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PP_5149 -2.6 -12.1 threonine deaminase compare
PP_1872 -2.5 -8.0 glutamate-pyruvate aminotransferase compare
PP_2324 -2.5 -6.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5347 -2.5 -9.8 pyruvate carboxylase subunit A compare
PP_5346 -2.4 -7.0 pyruvate carboxylase subunit B compare
PP_4700 -2.4 -2.3 pantothenate synthetase compare
PP_5028 -2.4 -4.5 proline iminopeptidase compare
PP_4699 -2.4 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0787 -2.3 -5.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -2.3 -4.8 Anthranilate phosphoribosyltransferase compare
PP_4804 -2.3 -4.0 RlpA-like lipoprotein compare
PP_4993 -2.2 -5.4 Glutathione synthetase compare
PP_0758 -2.2 -4.7 conserved protein of unknown function compare
PP_4797 -2.2 -3.1 conserved protein of unknown function compare
PP_4943 -2.2 -2.8 putative Glycosyl transferase compare
PP_5327 -2.2 -5.2 putative phosphate ABC transporter, permease subunit compare
PP_2370 -2.1 -2.2 conserved protein of unknown function compare
PP_4697 -2.1 -4.0 poly(A) polymerase compare
PP_5114 -2.1 -2.8 putative adenine methyltransferase compare
PP_5084 -2.1 -8.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4532 -2.1 -3.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1099 -2.1 -2.8 Cold shock protein CapB compare
PP_1734 -2.1 -5.2 Probable septum site-determining protein MinC compare
PP_4909 -2.0 -5.8 phosphoserine phosphatase compare
PP_0291 -2.0 -2.8 conserved protein of unknown function compare
PP_1268 -2.0 -2.4 putative HtrA suppressor protein sohA compare
PP_5289 -2.0 -5.1 Acetylglutamate kinase compare
PP_1898 -2.0 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_1995 -1.9 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_t49 -1.9 -4.7 tRNA-Met compare
PP_1366 -1.9 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1025 -1.8 -8.9 2-isopropylmalate synthase compare
PP_4058 -1.8 -7.5 1,4-alpha-glucan branching enzyme compare
PP_5217 -1.8 -8.6 Polyphosphate kinase compare
PP_1362 -1.8 -4.4 pyruvate kinase II compare
PP_5350 -1.8 -3.6 Transcriptional regulator, RpiR family compare
PP_1231 -1.8 -7.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0484 -1.8 -6.2 transporter of an unknown substrate compare
PP_4880 -1.8 -8.3 exoribonuclease R compare
PP_1988 -1.8 -7.1 3-isopropylmalate dehydrogenase compare
PP_4994 -1.7 -4.2 conserved protein of unknown function compare
PP_0184 -1.7 -4.7 Argininosuccinate lyase compare
PP_4937 -1.7 -3.8 toluene tolerance protein compare
PP_0393 -1.7 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0962 -1.7 -2.5 toluene-tolerance protein compare
PP_1985 -1.7 -3.9 3-isopropylmalate dehydratase large subunit compare
PP_3833 -1.6 -3.8 Response regulator compare
PP_0957 -1.6 -2.4 D-arabinose 5-phosphate isomerase compare
PP_2336 -1.5 -3.3 aconitate hydratase 1 compare
PP_3378 -1.5 -2.8 putative 2-ketogluconokinase compare
PP_1079 -1.5 -4.4 Ornithine carbamoyltransferase compare
PP_1826 -1.5 -1.8 Hydrolase, isochorismatase family compare
PP_5075 -1.5 -7.9 glutamate synthase (NADPH) beta subunit compare
PP_1217 -1.5 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3443 -1.5 -7.0 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4902 -1.5 -2.0 Oligoribonuclease compare
PP_4693 -1.5 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_0735 -1.4 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5639 -1.4 -5.9 conserved exported protein of unknown function compare
PP_5348 -1.4 -5.1 Transcriptional regulator, LysR family compare
PP_5104 -1.4 -6.3 thiazole synthase compare
PP_0401 -1.4 -3.4 Ribosomal RNA small subunit methyltransferase A compare
PP_1325 -1.4 -4.9 putative lipoprotein compare
PP_5294 -1.4 -5.0 Ribonuclease PH compare
PP_5329 -1.3 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5706 -1.3 -1.6 Sec translocation complex - SecG subunit compare
PP_0872 -1.3 -4.6 Peptide chain release factor 3 compare
PP_3417 -1.3 -4.0 D-gluconate transporter compare
PP_2581 -1.3 -1.8 conserved protein of unknown function compare
PP_0261 -1.3 -3.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4006 -1.2 -6.9 Putative arginyl-tRNA--protein transferase compare
PP_4365 -1.2 -4.5 Flagellar protein FliJ compare
PP_0022 -1.2 -1.3 hypothetical protein compare
PP_5400 -1.2 -5.7 conserved protein of unknown function compare
PP_4005 -1.2 -3.4 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_0066 -1.2 -6.7 Ribosomal RNA small subunit methyltransferase B compare
PP_4124 -1.2 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_0218 -1.2 -4.7 Sensory box protein compare
PP_5039 -1.2 -2.2 conserved protein of unknown function compare
PP_0719 -1.2 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1589 -1.2 -5.3 uridylyltransferase compare
PP_2032 -1.1 -4.1 putative ATPase compare
PP_4964 -1.1 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5155 -1.1 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0630 -1.1 -1.2 DNA gyrase inhibitor YacG compare
PP_3821 -1.1 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5027 -1.1 -1.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4808 -1.1 -2.6 23S rRNA m3psi1915 methyltransferase compare
PP_4942 -1.1 -2.5 conserved protein of unknown function compare
PP_1552 -1.1 -2.8 putative Phage replication protein compare
PP_3695 -1.1 -3.4 conserved protein of unknown function compare
PP_4009 -1.1 -4.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_3726 -1.1 -1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_1778 -1.1 -4.9 Lipopolysaccharide ABC export system, permease protein compare
PP_3505 -1.1 -1.8 conserved protein of unknown function compare
PP_5017 -1.1 -1.1 Sec-independent protein translocase protein TatB compare
PP_4782 -1.1 -4.6 Phosphomethylpyrimidine kinase compare
PP_2029 -1.1 -1.7 von Willebrand factor type A domain protein compare
PP_2136 -1.0 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4499 -1.0 -4.3 putative maturation enzyme compare
PP_1198 -1.0 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4094 -1.0 -1.4 conserved protein of unknown function compare
PP_1656 -1.0 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4015 -1.0 -2.9 HflD-like high frequency lysogenization protein compare
PP_4369 -1.0 -6.3 Flagellar M-ring protein compare
PP_4850 -1.0 -3.2 conserved membrane protein of unknown function compare
PP_1404 -1.0 -1.5 conserved protein of unknown function compare
PP_3434 -1.0 -2.3 conserved protein of unknown function compare
PP_5076 -1.0 -7.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_1493 -1.0 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0959 -1.0 -1.1 phospholipid ABC transporter compare
PP_3903 -1.0 -1.8 conserved protein of unknown function compare
PP_3150 -1.0 -4.9 conserved protein of unknown function compare
PP_4988 -1.0 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5203 -1.0 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4329 -1.0 -1.9 FlhB domain protein compare
PP_1632 -1.0 -1.7 conserved protein of unknown function compare
PP_0339 -0.9 -0.9 Pyruvate dehydrogenase E1 component compare
PP_1986 -0.9 -1.5 3-isopropylmalate dehydratase small subunit compare
PP_5354 -0.9 -4.7 conserved protein of unknown function compare
PP_4944 -0.9 -2.3 Carbamoyltransferase compare
PP_0435 -0.9 -3.8 Peptidase, M23/M37 family compare
PP_2794 -0.9 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4356 -0.9 -3.2 Flagellar protein FliO compare
PP_1097 -0.9 -1.2 Methionine--tRNA ligase compare
PP_5328 -0.9 -1.5 putative phosphate transport system permease protein compare
PP_4390 -0.9 -5.0 flagellar basal-body rod protein FlgC compare
PP_4684 -0.9 -3.2 conserved protein of unknown function with kinase-like domain compare
PP_4121 -0.9 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_2024 -0.9 -4.6 Exonuclease SbcC compare
PP_1757 -0.9 -3.0 DNA-binding transcriptional dual regulator compare
PP_3930 -0.9 -1.7 conserved exported protein of unknown function compare
PP_1664 -0.9 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5583 -0.9 -1.2 conserved protein of unknown function compare
PP_5514 -0.9 -1.6 conserved protein of unknown function compare
PP_3241 -0.9 -1.1 conserved exported protein of unknown function compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_4977 -0.9 -4.9 5,10-methylenetetrahydrofolate reductase compare
PP_1654 -0.9 -1.7 cysteine synthase B compare
PP_1110 -0.9 -3.5 serine acetyltransferase compare
PP_1255 -0.9 -2.1 putative cis-4-hydroxy-D-proline oxidase compare
PP_5507 -0.9 -1.5 protein of unknown function compare
PP_2388 -0.9 -1.8 Transporter, LysE family compare
PP_1655 -0.8 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3419 -0.8 -3.1 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_3651 -0.8 -5.5 Sensor histidine kinase/response regulator compare
PP_0119 -0.8 -2.3 putative zinc uptake regulation protein ZUR compare
PP_2951 -0.8 -2.1 Transcriptional regulator, TetR family compare
PP_2044 -0.8 -1.7 conserved inner membrane protein of unknown function compare
PP_2504 -0.8 -2.4 putative tautomerase K2 compare
PP_0961 -0.8 -3.4 toluene tolerance protein compare
PP_3295 -0.8 -1.6 YeeE/YedE family protein compare
PP_3055 -0.8 -2.6 Pyocin R2_PP, tail formation protein compare
PP_1733 -0.8 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_1779 -0.8 -2.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2285 -0.8 -2.7 conserved exported protein of unknown function compare
PP_0391 -0.8 -4.2 Glycerol-3-phosphate acyltransferase compare
PP_0547 -0.8 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5533 -0.8 -1.1 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms