Experiment set22IT076 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_4; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_0082 -5.0 -6.8 tryptophan synthase alpha chain compare
PP_4199 -4.8 -1.8 putative Lipoprotein compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_2168 -4.8 -12.6 Transaldolase compare
PP_5097 -4.7 -14.0 homoserine O-acetyltransferase compare
PP_4696 -4.6 -3.2 Nitrogen regulation protein NR(I) compare
PP_0083 -4.5 -8.0 tryptophan synthase beta chain compare
PP_5185 -4.3 -8.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2370 -4.3 -4.2 conserved protein of unknown function compare
PP_2371 -4.3 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0289 -4.0 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5039 -4.0 -3.5 conserved protein of unknown function compare
PP_0422 -4.0 -5.2 Indole-3-glycerol phosphate synthase compare
PP_1872 -4.0 -10.8 glutamate-pyruvate aminotransferase compare
PP_4804 -3.9 -2.7 RlpA-like lipoprotein compare
PP_2327 -3.8 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -3.8 -9.2 Histidinol dehydrogenase compare
PP_1995 -3.8 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -3.6 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1733 -3.6 -4.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0293 -3.5 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -3.5 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4678 -3.5 -12.7 Ketol-acid reductoisomerase compare
PP_4679 -3.5 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.5 -11.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -3.5 -6.9 methionine biosynthesis protein MetW compare
PP_0417 -3.4 -14.8 Anthranilate synthase component 1 compare
PP_3999 -3.4 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -3.1 -7.1 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.9 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_4890 -2.9 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5328 -2.9 -2.0 putative phosphate transport system permease protein compare
PP_4874 -2.9 -2.0 50S ribosomal protein L9 compare
PP_4909 -2.8 -6.6 phosphoserine phosphatase compare
PP_0962 -2.8 -3.1 toluene-tolerance protein compare
PP_5015 -2.8 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1088 -2.6 -10.8 Argininosuccinate synthase compare
PP_5149 -2.6 -9.3 threonine deaminase compare
PP_0420 -2.6 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0965 -2.6 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -2.6 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_5289 -2.6 -4.3 Acetylglutamate kinase compare
PP_0967 -2.6 -7.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -2.5 -5.4 Ornithine carbamoyltransferase compare
PP_1268 -2.5 -4.0 putative HtrA suppressor protein sohA compare
PP_5217 -2.5 -8.6 Polyphosphate kinase compare
PP_5114 -2.4 -2.9 putative adenine methyltransferase compare
PP_4785 -2.4 -5.8 conserved exported protein of unknown function compare
PP_1553 -2.4 -2.9 conserved protein of unknown function compare
PP_4213 -2.4 -3.2 putative dipeptidase compare
PP_1988 -2.3 -6.2 3-isopropylmalate dehydrogenase compare
PP_4699 -2.3 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5347 -2.3 -9.0 pyruvate carboxylase subunit A compare
PP_0872 -2.3 -6.9 Peptide chain release factor 3 compare
PP_3833 -2.3 -5.7 Response regulator compare
PP_5348 -2.3 -7.1 Transcriptional regulator, LysR family compare
PP_1022 -2.2 -5.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5128 -2.2 -5.2 Dihydroxy-acid dehydratase compare
PP_4098 -2.2 -2.2 UvrABC system protein C compare
PP_5028 -2.2 -4.6 proline iminopeptidase compare
PP_4964 -2.2 -4.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4532 -2.2 -3.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4005 -2.2 -5.1 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4993 -2.2 -4.3 Glutathione synthetase compare
PP_1025 -2.1 -8.2 2-isopropylmalate synthase compare
PP_1734 -2.1 -4.8 Probable septum site-determining protein MinC compare
PP_4700 -2.1 -2.0 pantothenate synthetase compare
PP_1898 -2.0 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2328 -2.0 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_2324 -2.0 -8.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4058 -2.0 -8.7 1,4-alpha-glucan branching enzyme compare
PP_5084 -2.0 -8.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5346 -1.9 -5.9 pyruvate carboxylase subunit B compare
PP_0758 -1.9 -3.6 conserved protein of unknown function compare
PP_1985 -1.9 -2.6 3-isopropylmalate dehydratase large subunit compare
PP_1231 -1.9 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -1.8 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0261 -1.8 -3.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4937 -1.8 -4.0 toluene tolerance protein compare
PP_4994 -1.8 -3.5 conserved protein of unknown function compare
PP_1325 -1.8 -6.2 putative lipoprotein compare
PP_1198 -1.8 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1269 -1.7 -1.4 Universal stress protein family compare
PP_4880 -1.7 -7.8 exoribonuclease R compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0735 -1.6 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_5350 -1.6 -3.0 Transcriptional regulator, RpiR family compare
PP_3417 -1.6 -3.5 D-gluconate transporter compare
PP_0184 -1.6 -4.3 Argininosuccinate lyase compare
PP_5155 -1.6 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0393 -1.6 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3105 -1.5 -2.0 conserved membrane protein of unknown function compare
PP_5095 -1.5 -1.3 pyrroline-5-carboxylate reductase compare
PP_5508 -1.5 -1.4 conserved protein of unknown function compare
PP_1362 -1.5 -2.5 pyruvate kinase II compare
PP_4988 -1.5 -6.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_t12 -1.5 -1.2 tRNA-Thr compare
PP_3481 -1.5 -2.6 conserved exported protein of unknown function compare
PP_2313 -1.5 -1.7 conserved membrane protein of unknown function compare
PP_1986 -1.4 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_1536 -1.4 -3.9 conserved protein of unknown function compare
PP_5303 -1.4 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1664 -1.4 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2908 -1.4 -3.6 DNA-binding transcriptional repressor compare
PP_1099 -1.4 -2.4 Cold shock protein CapB compare
PP_5267 -1.4 -1.1 putative cytochrome c5 compare
PP_1366 -1.4 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_2341 -1.3 -1.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0401 -1.3 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_t49 -1.3 -4.5 tRNA-Met compare
PP_3835 -1.3 -5.3 Sensory box histidine kinase compare
PP_4980 -1.3 -4.2 ATP-dependent RNA helicase compare
PP_4504 -1.3 -1.5 conserved exported protein of unknown function compare
PP_0484 -1.3 -3.6 transporter of an unknown substrate compare
PP_1654 -1.3 -2.4 cysteine synthase B compare
PP_4356 -1.3 -2.9 Flagellar protein FliO compare
PP_4642 -1.3 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_1589 -1.2 -5.1 uridylyltransferase compare
PP_3695 -1.2 -3.8 conserved protein of unknown function compare
PP_3048 -1.2 -1.9 conserved protein of unknown function compare
PP_4120 -1.2 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_2433 -1.2 -1.8 conserved protein of unknown function compare
PP_2499 -1.2 -1.4 conserved protein of unknown function compare
PP_1493 -1.2 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5075 -1.2 -6.6 glutamate synthase (NADPH) beta subunit compare
PP_4941 -1.2 -3.9 conserved exported protein of unknown function compare
PP_4902 -1.2 -1.4 Oligoribonuclease compare
PP_2414 -1.1 -1.4 conserved exported protein of unknown function compare
PP_0960 -1.1 -3.1 phospholipid ABC transporter binding protein compare
PP_5104 -1.1 -3.8 thiazole synthase compare
PP_5639 -1.1 -4.6 conserved exported protein of unknown function compare
PP_3509 -1.1 -3.8 Glyoxalase family protein compare
PP_2217 -1.1 -1.6 enoyl-CoA hydratase compare
PP_0685 -1.1 -2.1 conserved protein of unknown function compare
PP_1568 -1.1 -1.3 conserved protein of unknown function compare
PP_2878 -1.1 -1.8 conserved protein of unknown function compare
PP_0022 -1.1 -1.1 hypothetical protein compare
PP_5507 -1.1 -1.9 protein of unknown function compare
PP_2681 -1.1 -1.6 coenzyme PQQ synthesis protein D compare
PP_0291 -1.1 -1.1 conserved protein of unknown function compare
PP_5400 -1.1 -4.5 conserved protein of unknown function compare
PP_5225 -1.1 -1.2 frataxin compare
PP_0980 -1.1 -4.5 Probable cytosol aminopeptidase compare
PP_0195 -1.1 -1.4 conserved protein of unknown function compare
PP_0406 -1.1 -1.6 Nucleotidyltransferase family protein compare
PP_0959 -1.0 -1.0 phospholipid ABC transporter compare
PP_2337 -1.0 -1.4 aconitate isomerase compare
PP_5076 -1.0 -7.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_4006 -1.0 -4.9 Putative arginyl-tRNA--protein transferase compare
PP_4387 -1.0 -2.7 conserved exported protein of unknown function compare
PP_1829 -1.0 -2.4 Hydrolase, alpha/beta fold family compare
PP_0150 -1.0 -2.2 conserved exported protein of unknown function compare
PP_5203 -1.0 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_2402 -1.0 -1.3 putative Sensor histidine kinase compare
PP_4365 -1.0 -4.4 Flagellar protein FliJ compare
PP_1554 -1.0 -1.2 conserved protein of unknown function compare
PP_4500 -1.0 -3.0 TrpH family protein compare
PP_1774 -1.0 -1.3 conserved exported protein of unknown function compare
PP_2032 -1.0 -3.2 putative ATPase compare
PP_4499 -1.0 -3.4 putative maturation enzyme compare
PP_1041 -1.0 -1.2 twin arginine protein export complex subunit compare
PP_1460 -1.0 -5.6 putative Membrane protein compare
PP_3239 -0.9 -1.7 putative cointegrate resolution protein T Tn4652 compare
PP_5514 -0.9 -1.8 conserved protein of unknown function compare
PP_1656 -0.9 -3.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_0550 -0.9 -2.7 conserved protein of unknown function compare
PP_4943 -0.9 -1.3 putative Glycosyl transferase compare
PP_2274 -0.9 -2.4 conserved protein of unknown function compare
PP_3443 -0.9 -2.8 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0958 -0.9 -3.4 phospholipid ABC transporter ATP-binding subunit compare
PP_3821 -0.9 -4.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1074 -0.9 -2.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4529 -0.9 -1.3 conserved protein of unknown function compare
PP_2118 -0.9 -1.2 conserved protein of unknown function compare
PP_0164 -0.9 -2.5 conserved protein of unknown function compare
PP_2475 -0.9 -2.8 Transcriptional regulator, TetR family compare
PP_0218 -0.9 -3.5 Sensory box protein compare
PP_3649 -0.9 -2.4 Transcriptional regulator, GntR family compare
PP_1226 -0.9 -3.6 pre-queuosine 0 synthase compare
PP_2615 -0.8 -1.2 hemolysin-coregulated protein compare
PP_3738 -0.8 -1.4 putative Transcriptional regulator VanR compare
PP_3651 -0.8 -4.9 Sensor histidine kinase/response regulator compare
PP_4366 -0.8 -4.8 flagellum-specific ATP synthase compare
PP_0087 -0.8 -1.7 conserved exported protein of unknown function compare
PP_1778 -0.8 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1435 -0.8 -2.7 DNA repair protein RecO compare
PP_3935 -0.8 -1.8 conserved protein of unknown function compare
PP_1045 -0.8 -1.3 Type II secretion pathway protein XcpP compare
PP_2196 -0.8 -1.6 agmatinase compare
PP_5274 -0.8 -1.5 conserved protein of unknown function compare
PP_2547 -0.8 -1.8 Transcriptional regulator, LysR family compare
PP_4936 -0.8 -3.7 O-antigen polymerase compare
PP_1629 -0.8 -3.3 Protein RecA compare
PP_4782 -0.8 -2.5 Phosphomethylpyrimidine kinase compare
PP_0254 -0.8 -2.2 conserved protein of unknown function compare
PP_1632 -0.8 -0.9 conserved protein of unknown function compare
PP_1672 -0.8 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5168 -0.8 -1.6 sulfate/thiosulfate import ATP-binding protein compare
PP_4695 -0.8 -4.6 Sensory box histidine kinase compare
PP_1109 -0.8 -5.5 Transcriptional regulator, GntR family compare


Specific Phenotypes

For 3 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms