Experiment set22IT074 for Pseudomonas simiae WCS417

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.2 -1.5 orotate phosphoribosyltransferase compare
PS417_06375 -4.0 -1.4 deoxycytidine triphosphate deaminase compare
PS417_01915 -3.7 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24745 -2.1 -3.1 gamma-glutamyl phosphate reductase compare
PS417_09470 -2.1 -1.7 hypothetical protein compare
PS417_11400 -2.0 -2.4 phosphoglycerate mutase compare
PS417_18310 -2.0 -1.9 hypothetical protein compare
PS417_00755 -1.9 -1.3 biofilm PGA synthesis protein PgaD compare
PS417_27195 -1.9 -1.8 N-acetylglutamate synthase compare
PS417_21125 -1.6 -6.1 phosphoadenosine phosphosulfate reductase compare
PS417_08125 -1.6 -0.8 prephenate dehydratase compare
PS417_23950 -1.5 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_27245 -1.5 -4.5 aminotransferase DegT compare
PS417_19955 -1.4 -2.4 hypothetical protein compare
PS417_21630 -1.4 -1.8 magnesium transporter compare
PS417_27315 -1.4 -1.4 hypothetical protein compare
PS417_22450 -1.3 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_26815 -1.3 -2.3 peptidase M16 compare
PS417_00185 -1.3 -3.9 tryptophan synthase subunit beta compare
PS417_04650 -1.3 -1.2 D-alanine--D-alanine ligase compare
PS417_07035 -1.3 -6.9 uracil-DNA glycosylase compare
PS417_22445 -1.2 -2.5 ATP-dependent DNA helicase RuvB compare
PS417_26990 -1.2 -0.9 RNA pyrophosphohydrolase compare
PS417_00180 -1.2 -1.5 tryptophan synthase subunit alpha compare
PS417_23375 -1.2 -2.3 cytochrome C oxidase compare
PS417_15540 -1.2 -1.5 NUDIX hydrolase compare
PS417_20160 -1.2 -2.8 cysteine synthase compare
PS417_04375 -1.2 -1.5 ABC transporter ATP-binding protein compare
PS417_07470 -1.2 -1.7 hypothetical protein compare
PS417_08545 -1.1 -1.8 aromatic ring-opening dioxygenase LigB compare
PS417_14655 -1.0 -1.2 lysine transporter LysE compare
PS417_13800 -1.0 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_24835 -1.0 -4.1 hypothetical protein compare
PS417_00405 -1.0 -5.3 DNA polymerase I compare
PS417_11705 -1.0 -4.5 cyclic peptide transporter compare
PS417_24155 -1.0 -1.2 ATP-binding protein compare
PS417_03000 -1.0 -2.4 translation initiation factor Sui1 compare
PS417_25270 -1.0 -3.2 NrdR family transcriptional regulator compare
PS417_12660 -0.9 -1.6 hypothetical protein compare
PS417_07170 -0.9 -2.2 hypothetical protein compare
PS417_03560 -0.9 -1.2 GTP-binding protein compare
PS417_02270 -0.9 -2.7 carbamoyltransferase compare
PS417_05965 -0.9 -3.0 chemotaxis protein CheW compare
PS417_15035 -0.9 -1.4 alkylhydroperoxidase compare
PS417_20985 -0.9 -0.8 porin compare
PS417_09545 -0.9 -1.2 aldehyde-activating protein compare
PS417_00220 -0.9 -1.8 hypothetical protein compare
PS417_27005 -0.9 -1.0 membrane protein compare
PS417_19095 -0.9 -1.3 hypothetical protein compare
PS417_20125 -0.9 -3.1 phosphoribosylglycinamide formyltransferase compare
PS417_01605 -0.9 -0.9 phosphoglycerate mutase compare
PS417_03100 -0.9 -1.0 pilus assembly protein compare
PS417_01560 -0.9 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_24620 -0.8 -2.1 hypothetical protein compare
PS417_08335 -0.8 -1.3 hypothetical protein compare
PS417_27800 -0.8 -1.1 exodeoxyribonuclease III compare
PS417_17590 -0.8 -1.9 ABC transporter substrate-binding protein compare
PS417_27300 -0.8 -0.8 cell division protein ZapA compare
PS417_18710 -0.8 -4.7 hypothetical protein compare
PS417_23545 -0.8 -1.2 gamma-glutamyl kinase compare
PS417_23825 -0.8 -3.4 penicillin-binding protein compare
PS417_02805 -0.8 -1.5 urease subunit gamma compare
PS417_03385 -0.8 -1.1 flavin reductase compare
PS417_23855 -0.8 -1.7 ABC transporter substrate-binding protein compare
PS417_21360 -0.8 -0.9 termination factor Rho compare
PS417_05905 -0.8 -1.1 hypothetical protein compare
PS417_04385 -0.8 -1.8 organic solvent ABC transporter substrate-binding protein compare
PS417_11410 -0.8 -1.8 phospholipase compare
PS417_05790 -0.8 -1.7 hypothetical protein compare
PS417_03380 -0.8 -1.1 hypothetical protein compare
PS417_23150 -0.8 -2.2 Cro/Cl family transcriptional regulator compare
PS417_22570 -0.8 -0.6 H-NS histone compare
PS417_24030 -0.8 -1.9 MFS transporter compare
PS417_23915 -0.8 -2.4 pantoate--beta-alanine ligase compare
PS417_07710 -0.7 -2.8 membrane protein compare
PS417_08090 -0.7 -0.5 3-oxoacyl-ACP reductase compare
PS417_02560 -0.7 -0.8 23S rRNA methyltransferase compare
PS417_04365 -0.7 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05025 -0.7 -0.8 maleylacetoacetate isomerase compare
PS417_03260 -0.7 -1.0 5S ribosomal RNA compare
PS417_06335 -0.7 -1.4 S-formylglutathione hydrolase compare
PS417_09615 -0.7 -2.4 glycosyl transferase family 1 compare
PS417_27640 -0.7 -1.0 TetR family transcriptional regulator compare
PS417_00045 -0.7 -1.5 glycerol acyltransferase compare
PS417_22175 -0.7 -1.3 amino acid transporter LysE compare
PS417_12110 -0.7 -1.0 ATP-binding protein compare
PS417_09085 -0.7 -1.3 hypothetical protein compare
PS417_02175 -0.7 -2.0 transcriptional regulator compare
PS417_26420 -0.7 -1.2 hypothetical protein compare
PS417_11670 -0.7 -1.8 multidrug transporter MATE compare
PS417_27585 -0.7 -0.6 diaminopimelate epimerase compare
PS417_12910 -0.7 -2.5 alanine racemase compare
PS417_11530 -0.7 -2.3 amidase compare
PS417_19125 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_10010 -0.7 -2.1 Replication protein P compare
PS417_21270 -0.7 -1.4 translation initiation factor 2 compare
PS417_21235 -0.7 -1.9 transglutaminase compare
PS417_15475 -0.7 -2.5 IclR family transcriptional regulator compare
PS417_27705 -0.7 -1.0 amino acid dehydrogenase compare
PS417_14940 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_07140 -0.7 -2.0 peptidase M48 compare
PS417_19020 -0.7 -1.6 dimethylmenaquinone methyltransferase compare
PS417_08830 -0.6 -1.9 membrane protein compare
PS417_18105 -0.6 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_26725 -0.6 -2.1 hypothetical protein compare
PS417_19505 -0.6 -1.5 2,4-diaminobutyrate 4-aminotransferase compare
PS417_03515 -0.6 -1.3 type III secretion protein compare
PS417_23315 -0.6 -0.9 transcriptional regulator compare
PS417_17445 -0.6 -2.2 sulfur oxidation protein SoxZ compare
PS417_24895 -0.6 -0.9 hypothetical protein compare
PS417_24390 -0.6 -4.1 peptidase compare
PS417_20705 -0.6 -1.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_16920 -0.6 -2.4 multidrug RND transporter compare
PS417_17105 -0.6 -1.8 spore coat protein compare
PS417_02465 -0.6 -2.4 carbohydrate kinase compare
PS417_16810 -0.6 -1.5 acyl-CoA dehydrogenase compare
PS417_13870 -0.6 -2.1 hypothetical protein compare
PS417_27085 -0.6 -2.1 AraC family transcriptional regulator compare
PS417_23580 -0.6 -1.0 peptidylprolyl isomerase compare
PS417_28185 -0.6 -2.1 homocysteine methyltransferase compare
PS417_04865 -0.6 -1.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_13425 -0.6 -1.5 cupin compare
PS417_16720 -0.6 -0.8 membrane protein compare
PS417_19675 -0.6 -1.7 chemotaxis protein CheY compare
PS417_01270 -0.6 -1.1 iron ABC transporter substrate-binding protein compare
PS417_07950 -0.6 -1.4 MFS transporter compare
PS417_26265 -0.6 -1.4 hypothetical protein compare
PS417_08135 -0.6 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05985 -0.6 -1.0 chemotaxis protein CheY compare
PS417_22945 -0.6 -0.8 phosphoribosylglycinamide formyltransferase compare
PS417_06945 -0.6 -0.8 membrane protein compare
PS417_23330 -0.6 -1.5 hypothetical protein compare
PS417_03455 -0.6 -0.9 type III secretion protein compare
PS417_12740 -0.6 -1.5 secretion protein HlyD compare
PS417_10100 -0.6 -1.8 hypothetical protein compare
PS417_08410 -0.6 -1.2 hypothetical protein compare
PS417_10860 -0.6 -1.7 flagellar basal body rod protein FlgG compare
PS417_09865 -0.6 -1.1 hypothetical protein compare
PS417_00385 -0.6 -0.7 Fur family transcriptional regulator compare
PS417_11810 -0.6 -1.5 oxidoreductase compare
PS417_26660 -0.6 -2.2 protein PilI compare
PS417_20170 -0.6 -1.3 hypothetical protein compare
PS417_26320 -0.6 -2.2 ABC transporter permease compare
PS417_17565 -0.6 -2.0 branched-chain amino acid aminotransferase compare
PS417_14080 -0.6 -1.9 hypothetical protein compare
PS417_22990 -0.6 -0.4 iron dicitrate transport regulator FecR compare
PS417_22875 -0.6 -0.8 hypothetical protein compare
PS417_24600 -0.6 -2.5 hydrogenase compare
PS417_10330 -0.6 -1.3 histidine kinase compare
PS417_15005 -0.6 -1.3 hypothetical protein compare
PS417_04390 -0.6 -1.6 toluene tolerance protein compare
PS417_06025 -0.6 -1.7 alpha/beta hydrolase compare
PS417_22690 -0.6 -1.5 phosphogluconate dehydratase compare
PS417_18755 -0.6 -1.1 CrtK compare
PS417_02890 -0.6 -2.0 cobalt-precorrin-6X reductase compare
PS417_09605 -0.6 -1.2 glycosyl transferase compare
PS417_11755 -0.6 -2.0 diacetyl reductase compare
PS417_02210 -0.6 -3.6 diguanylate cyclase compare
PS417_05140 -0.6 -1.2 dipicolinate synthase compare
PS417_13445 -0.6 -1.0 D-aminopeptidase compare
PS417_01580 -0.6 -0.9 imidazole glycerol phosphate synthase compare
PS417_10870 -0.6 -1.1 GABA permease compare
PS417_04230 -0.6 -2.2 lipoprotein compare
PS417_02255 -0.6 -1.1 lipopolysaccharide kinase compare
PS417_09020 -0.6 -1.9 esterase compare
PS417_03340 -0.6 -1.4 gluconate transporter compare
PS417_09930 -0.6 -1.1 hypothetical protein compare
PS417_27870 -0.5 -1.9 ATP-dependent DNA helicase RecG compare
PS417_23725 -0.5 -1.1 methylmalonate-semialdehyde dehydrogenase compare
PS417_26985 -0.5 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23765 -0.5 -1.9 hypothetical protein compare
PS417_15115 -0.5 -2.1 exonuclease SbcD compare
PS417_19415 -0.5 -1.7 allantoinase compare
PS417_17690 -0.5 -2.2 amidase compare
PS417_02055 -0.5 -1.9 methyltransferase compare
PS417_13245 -0.5 -2.0 saccharopine dehydrogenase compare
PS417_15200 -0.5 -1.5 protein activator of alkane oxidation PraB compare
PS417_06200 -0.5 -2.4 protein-PII uridylyltransferase compare
PS417_21830 -0.5 -1.3 TetR family transcriptional regulator compare
PS417_23095 -0.5 -0.6 exodeoxyribonuclease compare
PS417_02690 -0.5 -2.4 N-acylglucosamine 2-epimerase compare
PS417_22630 -0.5 -1.5 hypothetical protein compare
PS417_02950 -0.5 -2.4 tRNA-dihydrouridine synthase B compare
PS417_21980 -0.5 -2.3 permease DsdX compare
PS417_11775 -0.5 -2.3 acetoin dehydrogenase compare
PS417_22575 -0.5 -3.3 exonuclease I compare
PS417_15410 -0.5 -1.3 hypothetical protein compare
PS417_08310 -0.5 -1.5 alpha/beta hydrolase compare
PS417_00510 -0.5 -0.7 membrane protein compare
PS417_02705 -0.5 -1.0 urease accessory protein UreF compare
PS417_14065 -0.5 -2.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00670 -0.5 -1.9 RNA polymerase sigma factor compare
PS417_02815 -0.5 -2.6 urea ABC transporter ATP-binding protein compare
PS417_01080 -0.5 -1.7 acyl-CoA dehydrogenase compare
PS417_05165 -0.5 -1.0 cytosol aminopeptidase compare
PS417_04875 -0.5 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_04975 -0.5 -1.7 response regulator receiver protein compare
PS417_20610 -0.5 -0.6 hypothetical protein compare
PS417_16035 -0.5 -2.8 ABC transporter substrate-binding protein compare
PS417_22840 -0.5 -1.0 tRNA-Met compare


Specific Phenotypes

For 1 genes in this experiment

For r2a control with 0.2x vogels Vogels_fungal_media in Pseudomonas simiae WCS417

For r2a control with 0.2x vogels Vogels_fungal_media across organisms