Experiment set22IT073 for Pseudomonas simiae WCS417

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PS417_27795 -4.1 -1.5 orotate phosphoribosyltransferase compare
PS417_23950 -3.4 -3.5 polynucleotide phosphorylase/polyadenylase compare
PS417_27300 -2.8 -1.4 cell division protein ZapA compare
PS417_22450 -2.6 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_26990 -2.4 -1.2 RNA pyrophosphohydrolase compare
PS417_06375 -2.4 -1.2 deoxycytidine triphosphate deaminase compare
PS417_02720 -2.1 -1.5 TetR family transcriptional regulator compare
PS417_04650 -2.1 -1.2 D-alanine--D-alanine ligase compare
PS417_04380 -2.0 -1.7 ABC transporter permease compare
PS417_21125 -1.9 -6.5 phosphoadenosine phosphosulfate reductase compare
PS417_24525 -1.8 -3.2 nuclease compare
PS417_26730 -1.8 -0.9 pyrroline-5-carboxylate reductase compare
PS417_21630 -1.7 -2.5 magnesium transporter compare
PS417_04440 -1.6 -2.9 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_07035 -1.5 -7.7 uracil-DNA glycosylase compare
PS417_00180 -1.5 -2.1 tryptophan synthase subunit alpha compare
PS417_27870 -1.4 -4.0 ATP-dependent DNA helicase RecG compare
PS417_24370 -1.4 -1.1 (2Fe-2S)-binding protein compare
PS417_07170 -1.4 -3.5 hypothetical protein compare
PS417_08125 -1.4 -0.7 prephenate dehydratase compare
PS417_23455 -1.4 -3.3 LrgA compare
PS417_01915 -1.3 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_26175 -1.3 -1.5 sarcosine oxidase subunit gamma compare
PS417_21625 -1.3 -1.2 DNA-binding protein compare
PS417_09210 -1.3 -1.0 TetR family transcriptional regulator compare
PS417_21510 -1.3 -1.8 histidine kinase compare
PS417_14315 -1.3 -1.7 2,5-dioxovalerate dehydrogenase compare
PS417_05160 -1.2 -0.8 DNA polymerase III subunit chi compare
PS417_22445 -1.2 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_11705 -1.2 -4.5 cyclic peptide transporter compare
PS417_18710 -1.2 -3.9 hypothetical protein compare
PS417_18885 -1.1 -2.1 GntR family transcriptional regulator compare
PS417_08435 -1.1 -2.4 pilus assembly protein PilZ compare
PS417_16720 -1.1 -1.1 membrane protein compare
PS417_01920 -1.1 -1.0 ATP-dependent protease subunit HslV compare
PS417_00085 -1.0 -2.3 16S rRNA methyltransferase compare
PS417_28230 -1.0 -3.0 transcriptional regulator compare
PS417_13800 -1.0 -1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02270 -1.0 -2.7 carbamoyltransferase compare
PS417_22565 -1.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_15100 -1.0 -2.3 BatB protein compare
PS417_00550 -1.0 -1.0 hypothetical protein compare
PS417_26755 -1.0 -2.1 nucleoside-triphosphate diphosphatase compare
PS417_25985 -0.9 -1.8 dethiobiotin synthetase compare
PS417_27290 -0.9 -0.9 hypothetical protein compare
PS417_02950 -0.9 -1.9 tRNA-dihydrouridine synthase B compare
PS417_13300 -0.9 -1.5 short-chain dehydrogenase compare
PS417_11770 -0.9 -1.0 pyruvate dehydrogenase compare
PS417_01970 -0.9 -3.0 pilus assembly protein compare
PS417_25710 -0.9 -0.9 indole-3-glycerol-phosphate synthase compare
PS417_24650 -0.9 -1.6 membrane protein compare
PS417_06530 -0.9 -1.9 membrane protein compare
PS417_07640 -0.9 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20635 -0.9 -1.1 ABC transporter ATP-binding protein compare
PS417_01140 -0.9 -1.9 taurine ABC transporter permease compare
PS417_20825 -0.9 -1.9 drug:proton antiporter compare
PS417_08335 -0.9 -1.5 hypothetical protein compare
PS417_01580 -0.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_26420 -0.9 -1.3 hypothetical protein compare
PS417_13990 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_06730 -0.9 -0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_12110 -0.9 -1.6 ATP-binding protein compare
PS417_09590 -0.9 -3.3 membrane protein compare
PS417_26815 -0.9 -1.9 peptidase M16 compare
PS417_06095 -0.8 -1.4 energy transducer TonB compare
PS417_10145 -0.8 -1.8 hypothetical protein compare
PS417_24745 -0.8 -2.0 gamma-glutamyl phosphate reductase compare
PS417_23360 -0.8 -0.8 hypothetical protein compare
PS417_27315 -0.8 -1.0 hypothetical protein compare
PS417_24895 -0.8 -1.3 hypothetical protein compare
PS417_19215 -0.8 -3.4 polyphosphate kinase compare
PS417_17565 -0.8 -1.7 branched-chain amino acid aminotransferase compare
PS417_08230 -0.8 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27245 -0.8 -1.8 aminotransferase DegT compare
PS417_02365 -0.8 -1.9 hypothetical protein compare
PS417_13730 -0.8 -1.0 hypothetical protein compare
PS417_04365 -0.8 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13490 -0.8 -1.1 hypothetical protein compare
PS417_27520 -0.8 -1.8 uroporphyrin-III methyltransferase compare
PS417_20785 -0.8 -2.4 transcriptional regulator compare
PS417_18780 -0.8 -1.3 flavin reductase compare
PS417_23025 -0.8 -2.6 murein transglycosylase compare
PS417_20125 -0.8 -1.4 phosphoribosylglycinamide formyltransferase compare
PS417_15475 -0.7 -2.5 IclR family transcriptional regulator compare
PS417_01285 -0.7 -1.4 haloacid dehalogenase compare
PS417_05985 -0.7 -1.6 chemotaxis protein CheY compare
PS417_00385 -0.7 -0.8 Fur family transcriptional regulator compare
PS417_18450 -0.7 -2.4 hydrolase compare
PS417_09655 -0.7 -1.6 RNA polymerase sigma factor compare
PS417_24155 -0.7 -1.0 ATP-binding protein compare
PS417_12690 -0.7 -3.6 xylulose kinase compare
PS417_08465 -0.7 -1.8 elongation factor GreAB compare
PS417_17840 -0.7 -1.2 betaine-aldehyde dehydrogenase compare
PS417_02280 -0.7 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_00405 -0.7 -3.9 DNA polymerase I compare
PS417_00185 -0.7 -1.4 tryptophan synthase subunit beta compare
PS417_03525 -0.7 -1.0 hypothetical protein compare
PS417_27035 -0.7 -2.3 FAD-linked oxidase compare
PS417_05865 -0.7 -1.3 hypothetical protein compare
PS417_16510 -0.7 -1.5 Clp protease ClpX compare
PS417_14915 -0.7 -1.0 host specificity protein compare
PS417_10370 -0.7 -1.7 ATPase compare
PS417_02105 -0.7 -2.1 acyl carrier protein compare
PS417_27640 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_23460 -0.7 -2.1 LysR family transcriptional regulator compare
PS417_14065 -0.7 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19675 -0.7 -2.2 chemotaxis protein CheY compare
PS417_26550 -0.7 -1.6 ABC transporter compare
PS417_27215 -0.7 -1.7 hypothetical protein compare
PS417_05130 -0.7 -1.5 glutaredoxin compare
PS417_24500 -0.7 -1.3 DEAD/DEAH box helicase compare
PS417_04375 -0.7 -1.0 ABC transporter ATP-binding protein compare
PS417_10995 -0.7 -1.5 GntR family transcriptional regulator compare
PS417_23375 -0.7 -1.2 cytochrome C oxidase compare
PS417_18310 -0.7 -0.8 hypothetical protein compare
PS417_20875 -0.7 -2.1 chromosome segregation protein SMC compare
PS417_17805 -0.7 -1.2 microcin B17 processing protein McbC compare
PS417_09930 -0.7 -1.2 hypothetical protein compare
PS417_16565 -0.7 -2.4 secretin compare
PS417_21135 -0.6 -2.3 Asp/Glu/hydantoin racemase compare
PS417_24375 -0.6 -2.7 hypothetical protein compare
PS417_23205 -0.6 -2.8 transcriptional regulator compare
PS417_09440 -0.6 -1.1 MerR family transcriptional regulator compare
PS417_14425 -0.6 -1.7 alkylhydroperoxidase compare
PS417_21070 -0.6 -1.6 aconitate hydratase compare
PS417_02485 -0.6 -1.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13900 -0.6 -2.1 chemotaxis protein CheR compare
PS417_17035 -0.6 -0.9 Cro/Cl family transcriptional regulator compare
PS417_24705 -0.6 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_14710 -0.6 -1.0 isochorismatase compare
PS417_02865 -0.6 -1.5 peptidase compare
PS417_25380 -0.6 -1.9 hypothetical protein compare
PS417_11825 -0.6 -1.2 transcriptional regulator compare
PS417_18540 -0.6 -1.6 colicin V production CvpA compare
PS417_20245 -0.6 -2.2 copper resistance protein CopD compare
PS417_23380 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_10955 -0.6 -1.7 porin compare
PS417_13090 -0.6 -1.9 dienelactone hydrolase compare
PS417_27005 -0.6 -0.7 membrane protein compare
PS417_23820 -0.6 -1.5 hypothetical protein compare
PS417_14925 -0.6 -2.1 2-methylcitrate dehydratase compare
PS417_08420 -0.6 -1.5 lipoprotein compare
PS417_10275 -0.6 -1.0 histidine kinase compare
PS417_02055 -0.6 -1.7 methyltransferase compare
PS417_22575 -0.6 -3.3 exonuclease I compare
PS417_23330 -0.6 -2.1 hypothetical protein compare
PS417_15110 -0.6 -2.0 protein BatD compare
PS417_07565 -0.6 -1.1 hypothetical protein compare
PS417_13545 -0.6 -1.6 arginine aminotransferase compare
PS417_06835 -0.6 -1.6 phospholipase compare
PS417_21955 -0.6 -1.8 dehydrogenase compare
PS417_26985 -0.6 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11375 -0.6 -0.7 hypothetical protein compare
PS417_21430 -0.6 -1.1 3-oxoacyl-ACP synthase compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_03895 -0.6 -1.8 methyltransferase compare
PS417_16035 -0.6 -2.1 ABC transporter substrate-binding protein compare
PS417_15105 -0.6 -2.8 membrane protein compare
PS417_04055 -0.6 -1.7 peptide transporter compare
PS417_08090 -0.6 -0.5 3-oxoacyl-ACP reductase compare
PS417_27085 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_21475 -0.6 -1.7 HAD family hydrolase compare
PS417_08185 -0.6 -1.6 glycosyl transferase compare
PS417_08740 -0.6 -1.1 ribose-phosphate pyrophosphokinase compare
PS417_14165 -0.6 -1.6 ArsR family transcriptional regulator compare
PS417_16985 -0.6 -2.6 membrane protein compare
PS417_18105 -0.6 -1.0 iron-dicitrate transporter substrate-binding subunit compare
PS417_03300 -0.6 -1.3 alanine acetyltransferase compare
PS417_05735 -0.6 -1.9 tail fiber protein compare
PS417_21480 -0.6 -0.7 23S rRNA pseudouridylate synthase compare
PS417_06735 -0.6 -1.4 3-oxoadipate enol-lactonase compare
PS417_18455 -0.6 -0.9 hypothetical protein compare
PS417_16815 -0.6 -1.0 acyl-CoA dehydrogenase compare
PS417_28350 -0.6 -2.5 fatty acid methyltransferase compare
PS417_21855 -0.6 -1.7 hypothetical protein compare
PS417_20160 -0.6 -1.3 cysteine synthase compare
PS417_09085 -0.6 -0.6 hypothetical protein compare
PS417_02440 -0.5 -2.2 flagellar motor protein MotB compare
PS417_02915 -0.5 -1.5 precorrin-3B C17-methyltransferase compare
PS417_01950 -0.5 -1.9 malate dehydrogenase compare
PS417_23250 -0.5 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_02805 -0.5 -0.9 urease subunit gamma compare
PS417_12855 -0.5 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23385 -0.5 -2.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_17685 -0.5 -1.5 allantoate amidohydrolase compare
PS417_02880 -0.5 -0.8 copper chaperone compare
PS417_10130 -0.5 -2.6 hypothetical protein compare
PS417_05710 -0.5 -1.4 hypothetical protein compare
PS417_10870 -0.5 -1.2 GABA permease compare
PS417_03350 -0.5 -1.7 cytochrome C peroxidase compare
PS417_00390 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_05155 -0.5 -1.6 DNA polymerase III subunit chi compare
PS417_17240 -0.5 -1.3 trigger factor compare
PS417_16870 -0.5 -1.3 short-chain dehydrogenase compare
PS417_11545 -0.5 -1.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_11000 -0.5 -1.5 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_10425 -0.5 -0.8 hypothetical protein compare
PS417_11175 -0.5 -1.3 AraC family transcriptional regulator compare
PS417_10335 -0.5 -1.1 peroxiredoxin compare
PS417_00445 -0.5 -3.1 histidine kinase compare


Specific Phenotypes

For 1 genes in this experiment

For r2a control with 0.2x vogels Vogels_fungal_media in Pseudomonas simiae WCS417

For r2a control with 0.2x vogels Vogels_fungal_media across organisms