Experiment set22IT069 for Pseudomonas putida KT2440

Compare to:

no extra nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1589 -5.4 -5.3 uridylyltransferase compare
PP_5048 -5.4 -6.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0967 -5.0 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -5.0 -6.8 tryptophan synthase beta chain compare
PP_0184 -4.7 -7.8 Argininosuccinate lyase compare
PP_1995 -4.5 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -4.2 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0082 -4.2 -8.1 tryptophan synthase alpha chain compare
PP_2168 -4.1 -8.4 Transaldolase compare
PP_0422 -4.1 -5.8 Indole-3-glycerol phosphate synthase compare
PP_2371 -4.0 -8.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4902 -4.0 -2.8 Oligoribonuclease compare
PP_2328 -3.9 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -3.9 -2.7 putative Sensor histidine kinase compare
PP_5098 -3.9 -6.6 methionine biosynthesis protein MetW compare
PP_0846 -3.9 -2.6 DnaK-like molecular chaperone specific for IscU compare
PP_0289 -3.9 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0966 -3.8 -10.4 Histidinol dehydrogenase compare
PP_0292 -3.8 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4340 -3.8 -5.2 response regulator for chemotactic signal transduction compare
PP_5289 -3.7 -5.3 Acetylglutamate kinase compare
PP_0290 -3.7 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -3.7 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_1988 -3.6 -6.2 3-isopropylmalate dehydrogenase compare
PP_5047 -3.6 -6.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1231 -3.5 -7.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2370 -3.3 -3.6 conserved protein of unknown function compare
PP_5097 -3.2 -9.8 homoserine O-acetyltransferase compare
PP_4680 -3.2 -11.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -3.2 -11.0 Ketol-acid reductoisomerase compare
PP_2327 -3.2 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1986 -3.2 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_5346 -3.1 -7.9 pyruvate carboxylase subunit B compare
PP_3999 -3.0 -8.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -3.0 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -2.9 -7.0 Branched-chain-amino-acid aminotransferase compare
PP_4122 -2.9 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0420 -2.9 -8.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5075 -2.9 -10.1 glutamate synthase (NADPH) beta subunit compare
PP_5348 -2.9 -8.9 Transcriptional regulator, LysR family compare
PP_5128 -2.7 -6.2 Dihydroxy-acid dehydratase compare
PP_1079 -2.7 -4.9 Ornithine carbamoyltransferase compare
PP_0787 -2.6 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0417 -2.6 -12.6 Anthranilate synthase component 1 compare
PP_1025 -2.6 -10.0 2-isopropylmalate synthase compare
PP_1088 -2.6 -9.2 Argininosuccinate synthase compare
PP_1705 -2.6 -9.1 nitrite reductase [NAD(P)H] large subunit conserved
PP_0965 -2.6 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2093 -2.6 -7.0 NasT conserved
PP_1706 -2.6 -3.2 Nitrite reductase compare
PP_4338 -2.5 -7.5 Chemotaxis histidine kinase CheA compare
PP_5093 -2.5 -2.0 twitching motility protein compare
PP_0735 -2.5 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_2092 -2.5 -6.9 Nitrate transporter conserved
PP_5347 -2.5 -9.2 pyruvate carboxylase subunit A compare
PP_5076 -2.5 -12.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_2001 -2.5 -6.7 O-succinylhomoserine sulfhydrylase compare
PP_2378 -2.3 -3.7 Fe/S biogenesis protein NfuA compare
PP_4696 -2.3 -4.9 Nitrogen regulation protein NR(I) compare
PP_5350 -2.2 -4.3 Transcriptional regulator, RpiR family compare
PP_2122 -2.2 -4.2 molybdenum cofactor biosynthesis protein B compare
PP_5185 -2.2 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4785 -2.2 -4.8 conserved exported protein of unknown function compare
PP_0421 -2.1 -5.9 Anthranilate phosphoribosyltransferase compare
PP_4227 -2.1 -2.4 conserved protein of unknown function compare
PP_1304 -2.0 -7.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5217 -2.0 -7.5 Polyphosphate kinase compare
PP_5155 -2.0 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4874 -2.0 -1.9 50S ribosomal protein L9 compare
PP_5203 -1.9 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_1898 -1.9 -3.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4700 -1.9 -2.2 pantothenate synthetase compare
PP_2094 -1.9 -5.6 putative Nitrate-binding protein NasS conserved
PP_4058 -1.8 -7.3 1,4-alpha-glucan branching enzyme compare
PP_4977 -1.8 -8.4 5,10-methylenetetrahydrofolate reductase compare
PP_3417 -1.8 -4.5 D-gluconate transporter compare
PP_4504 -1.8 -1.9 conserved exported protein of unknown function compare
PP_4804 -1.7 -3.5 RlpA-like lipoprotein compare
PP_2088 -1.7 -2.0 RNA polymerase sigma factor SigX compare
PP_1381 -1.7 -1.7 4-carboxymuconolactone decarboxylase compare
PP_5423 -1.7 -2.9 conserved membrane protein of unknown function compare
PP_3505 -1.7 -2.3 conserved protein of unknown function compare
PP_4679 -1.7 -4.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1734 -1.7 -4.4 Probable septum site-determining protein MinC compare
PP_4824 -1.6 -5.4 Sensor histidine kinase/response regulator compare
PP_1654 -1.6 -3.1 cysteine synthase B compare
PP_1912 -1.6 -4.2 Phosphate acyltransferase compare
PP_5331 -1.6 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4129 -1.6 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4830 -1.6 -4.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_1664 -1.6 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5508 -1.5 -1.7 conserved protein of unknown function compare
PP_0566 -1.5 -1.5 translation-related factor compare
PP_1764 -1.5 -2.5 Phosphoglycolate phosphatase 2 compare
PP_2140 -1.5 -4.2 conserved protein of unknown function compare
PP_0261 -1.5 -4.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0366 -1.4 -4.7 dethiobiotin synthetase compare
PP_5303 -1.4 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0363 -1.4 -8.3 8-amino-7-oxononanoate synthase compare
PP_4829 -1.4 -3.1 putative precorrin-3B synthase compare
PP_0362 -1.4 -5.9 Biotin synthase compare
PP_2999 -1.4 -1.7 Glyoxalase family protein compare
PP_1528 -1.4 -1.2 conserved protein of unknown function compare
PP_1512 -1.4 -2.9 conserved protein of unknown function compare
PP_4701 -1.4 -1.2 glucose-6-phosphate isomerase compare
PP_0291 -1.4 -1.9 conserved protein of unknown function compare
PP_1022 -1.3 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1672 -1.3 -3.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1294 -1.3 -2.6 molybdopterin synthase large subunit compare
PP_5329 -1.3 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2302 -1.3 -3.7 DNA-binding, ATP-dependent protease compare
PP_4739 -1.3 -2.1 conserved protein of unknown function compare
PP_3233 -1.3 -2.7 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_4362 -1.3 -2.9 conserved protein of unknown function compare
PP_4984 -1.3 -6.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5310 -1.3 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_1303 -1.2 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_1233 -1.2 -3.3 sulfurtransferase compare
PP_1999 -1.2 -1.6 membrane protein required for colicin V production compare
PP_3508 -1.2 -2.6 Protein CobW compare
PP_4832 -1.2 -2.8 Precorrin-6x reductase compare
PP_4693 -1.2 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_2375 -1.2 -6.6 cobalamin-dependent methionine synthase compare
PP_1656 -1.2 -4.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_3971 -1.2 -1.6 conserved protein of unknown function compare
PP_5007 -1.2 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5230 -1.2 -1.9 Tyrosine recombinase XerC compare
PP_1362 -1.2 -2.5 pyruvate kinase II compare
PP_4994 -1.1 -2.9 conserved protein of unknown function compare
PP_0547 -1.1 -3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0195 -1.1 -1.2 conserved protein of unknown function compare
PP_0365 -1.1 -5.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1783 -1.1 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4480 -1.1 -4.9 arginine N-succinyltransferase, subunit alpha compare
PP_5311 -1.1 -3.9 putative signal transduction protein compare
PP_5104 -1.1 -5.8 thiazole synthase compare
PP_0364 -1.1 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_1994 -1.1 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_5017 -1.1 -1.1 Sec-independent protein translocase protein TatB compare
PP_0957 -1.1 -1.4 D-arabinose 5-phosphate isomerase compare
PP_2032 -1.1 -3.6 putative ATPase compare
PP_4909 -1.1 -3.0 phosphoserine phosphatase compare
PP_1655 -1.1 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4424 -1.1 -2.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1054 -1.0 -2.0 Type II secretion pathway protein XcpZ compare
PP_1926 -1.0 -3.6 putative phosphotyrosine-protein phosphatase compare
PP_0185 -1.0 -4.9 Positive alginate biosynthesis regulatory protein compare
PP_4333 -1.0 -4.1 CheW domain protein compare
PP_2145 -1.0 -2.3 beta-N-acetylglucosaminidase compare
PP_0398 -1.0 -2.0 Thiosulfate sulfurtransferase GlpE compare
PP_3637 -1.0 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5628 -1.0 -2.7 conserved protein of unknown function compare
PP_5015 -1.0 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1011 -1.0 -4.0 glucokinase compare
PP_0962 -1.0 -2.1 toluene-tolerance protein compare
PP_4776 -1.0 -5.0 AsnC family transcriptional regulator compare
PP_2123 -1.0 -5.0 molybdenum::molybdopterin ligase compare
PP_3105 -1.0 -1.2 conserved membrane protein of unknown function compare
PP_5328 -1.0 -1.6 putative phosphate transport system permease protein compare
PP_1681 -0.9 -5.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4797 -0.9 -2.0 conserved protein of unknown function compare
PP_1261 -0.9 -2.4 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4247 -0.9 -1.4 Exonuclease compare
PP_1012 -0.9 -3.8 DNA-binding response regulator compare
PP_4964 -0.9 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1366 -0.9 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4695 -0.9 -5.3 Sensory box histidine kinase compare
PP_2885 -0.9 -2.7 putative Transporter compare
PP_1426 -0.9 -5.3 L-aspartate oxidase compare
PP_4254 -0.9 -1.6 conserved protein of unknown function compare
PP_2171 -0.9 -3.1 Transporter, LysE family compare
PP_2225 -0.9 -3.8 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_2070 -0.9 -1.8 Transcriptional regulator, AraC family compare
PP_5639 -0.9 -3.7 conserved exported protein of unknown function compare
PP_1367 -0.9 -4.2 formyltetrahydrofolate hydrolase compare
PP_4782 -0.9 -2.4 Phosphomethylpyrimidine kinase compare
PP_2615 -0.9 -2.1 hemolysin-coregulated protein compare
PP_0893 -0.9 -2.1 ThiJ/PfpI family protein compare
PP_1675 -0.9 -4.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0848 -0.8 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0138 -0.8 -4.7 conserved membrane protein of unknown function compare
PP_2214 -0.8 -2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2880 -0.8 -2.0 Transcriptional regulator, TetR family compare
PP_2550 -0.8 -2.6 putative transcriptional regulatory protein compare
PP_5582 -0.8 -1.1 conserved protein of unknown function compare
PP_4069 -0.8 -2.2 conserved protein of unknown function compare
PP_1824 -0.8 -1.3 Smr domain protein compare
PP_3507 -0.8 -5.3 Aerobic cobaltochelatase subunit CobN compare
PP_4827 -0.8 -4.2 Precorrin-2 C(20)-methyltransferase compare
PP_4895 -0.8 -1.5 tRNA dimethylallyltransferase compare
PP_3002 -0.8 -2.1 shikimate dehydrogenase-related enzyme compare
PP_5267 -0.8 -1.3 putative cytochrome c5 compare
PP_0152 -0.8 -1.2 conserved exported protein of unknown function compare
PP_1703 -0.8 -5.4 assimilatory nitrate reductase/sulfite reductase conserved
PP_5028 -0.8 -1.9 proline iminopeptidase compare
PP_1836 -0.8 -2.3 putative metal transporter, ZIP family compare
PP_5471 -0.8 -1.0 putative response regulator receiver protein compare
PP_0125 -0.8 -1.3 putative cytochrome c-type protein compare
PP_4521 -0.8 -4.2 putative aerotaxis receptor compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms