Experiment set22IT068 for Pseudomonas putida KT2440

Compare to:

no extra nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_5048 -6.0 -8.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1985 -5.1 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_1589 -4.9 -9.8 uridylyltransferase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_2168 -4.6 -13.2 Transaldolase compare
PP_0082 -4.6 -7.7 tryptophan synthase alpha chain compare
PP_0293 -4.4 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -4.4 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -4.3 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -4.2 -11.8 Histidinol dehydrogenase compare
PP_0184 -4.1 -9.1 Argininosuccinate lyase compare
PP_1079 -4.1 -7.3 Ornithine carbamoyltransferase compare
PP_0083 -4.0 -8.8 tryptophan synthase beta chain compare
PP_4890 -3.8 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4696 -3.8 -5.7 Nitrogen regulation protein NR(I) compare
PP_0289 -3.7 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1706 -3.7 -5.7 Nitrite reductase compare
PP_0420 -3.6 -11.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3999 -3.5 -7.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -3.4 -13.5 homoserine O-acetyltransferase compare
PP_5047 -3.4 -5.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1986 -3.4 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_0965 -3.4 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2328 -3.3 -8.1 Phosphoadenosine phosphosulfate reductase compare
PP_5098 -3.3 -8.0 methionine biosynthesis protein MetW compare
PP_4902 -3.2 -3.8 Oligoribonuclease compare
PP_1988 -3.2 -9.2 3-isopropylmalate dehydrogenase compare
PP_5346 -3.2 -8.1 pyruvate carboxylase subunit B compare
PP_3511 -3.2 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_5128 -3.2 -7.4 Dihydroxy-acid dehydratase compare
PP_5347 -3.1 -11.2 pyruvate carboxylase subunit A compare
PP_2093 -3.1 -8.7 NasT conserved
PP_4680 -3.1 -13.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.1 -15.2 Anthranilate synthase component 1 compare
PP_5075 -3.1 -11.1 glutamate synthase (NADPH) beta subunit compare
PP_4678 -3.1 -13.1 Ketol-acid reductoisomerase compare
PP_2001 -3.1 -8.3 O-succinylhomoserine sulfhydrylase compare
PP_5185 -3.1 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -2.9 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -2.9 -4.7 Acetylglutamate kinase compare
PP_4804 -2.8 -4.5 RlpA-like lipoprotein compare
PP_5076 -2.7 -15.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_1705 -2.7 -10.1 nitrite reductase [NAD(P)H] large subunit conserved
PP_2092 -2.7 -9.1 Nitrate transporter conserved
PP_1654 -2.7 -4.0 cysteine synthase B compare
PP_4338 -2.7 -7.1 Chemotaxis histidine kinase CheA compare
PP_4785 -2.6 -5.9 conserved exported protein of unknown function compare
PP_1088 -2.6 -9.4 Argininosuccinate synthase compare
PP_5350 -2.5 -4.8 Transcriptional regulator, RpiR family compare
PP_2371 -2.5 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -2.5 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0292 -2.4 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4340 -2.4 -5.9 response regulator for chemotactic signal transduction compare
PP_0291 -2.4 -2.9 conserved protein of unknown function compare
PP_1362 -2.4 -4.8 pyruvate kinase II compare
PP_1025 -2.4 -10.4 2-isopropylmalate synthase compare
PP_4909 -2.4 -7.6 phosphoserine phosphatase compare
PP_5095 -2.3 -1.6 pyrroline-5-carboxylate reductase compare
PP_1231 -2.3 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5348 -2.2 -6.0 Transcriptional regulator, LysR family compare
PP_0421 -2.2 -6.3 Anthranilate phosphoribosyltransferase compare
PP_1303 -2.2 -6.6 Sulfate adenylyltransferase subunit 2 compare
PP_1022 -2.2 -4.7 glucose 6-phosphate-1-dehydrogenase compare
PP_2370 -2.1 -2.5 conserved protein of unknown function compare
PP_2088 -2.1 -2.8 RNA polymerase sigma factor SigX compare
PP_0787 -2.1 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -2.1 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -2.0 -4.1 Indole-3-glycerol phosphate synthase compare
PP_1733 -1.9 -4.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4679 -1.9 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -1.8 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2094 -1.8 -5.1 putative Nitrate-binding protein NasS conserved
PP_4058 -1.8 -8.2 1,4-alpha-glucan branching enzyme compare
PP_4824 -1.8 -6.0 Sensor histidine kinase/response regulator compare
PP_4700 -1.8 -2.4 pantothenate synthetase compare
PP_5217 -1.8 -8.4 Polyphosphate kinase compare
PP_5546 -1.8 -1.9 conserved protein of unknown function compare
PP_5303 -1.7 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2375 -1.7 -10.0 cobalamin-dependent methionine synthase compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1304 -1.5 -7.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1734 -1.5 -3.5 Probable septum site-determining protein MinC compare
PP_0362 -1.5 -7.4 Biotin synthase compare
PP_4699 -1.5 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1912 -1.4 -4.8 Phosphate acyltransferase compare
PP_4424 -1.4 -3.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2307 -1.4 -1.3 conserved protein of unknown function compare
PP_4977 -1.4 -8.3 5,10-methylenetetrahydrofolate reductase compare
PP_4994 -1.4 -3.8 conserved protein of unknown function compare
PP_0735 -1.4 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4782 -1.4 -3.6 Phosphomethylpyrimidine kinase compare
PP_1673 -1.4 -5.0 cobyrinate a,c-diamide synthase compare
PP_5216 -1.3 -1.3 exopolyphosphatase compare
PP_3417 -1.3 -5.1 D-gluconate transporter compare
PP_0065 -1.3 -3.2 NAD-binding component of TrK potassium transporter compare
PP_5571 -1.3 -1.9 conserved protein of unknown function compare
PP_1898 -1.3 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5329 -1.3 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2773 -1.3 -1.8 conserved protein of unknown function compare
PP_0673 -1.3 -3.2 conserved protein of unknown function compare
PP_2123 -1.2 -5.8 molybdenum::molybdopterin ligase compare
PP_5203 -1.2 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_2140 -1.2 -4.9 conserved protein of unknown function compare
PP_4480 -1.2 -5.7 arginine N-succinyltransferase, subunit alpha compare
PP_3506 -1.2 -2.4 Magnesium chelatase, subunit ChII compare
PP_1011 -1.2 -5.3 glucokinase compare
PP_2402 -1.2 -1.7 putative Sensor histidine kinase compare
PP_4993 -1.2 -3.7 Glutathione synthetase compare
PP_0363 -1.2 -6.3 8-amino-7-oxononanoate synthase compare
PP_5000 -1.2 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_4695 -1.2 -6.2 Sensory box histidine kinase compare
PP_1269 -1.1 -1.4 Universal stress protein family compare
PP_5471 -1.1 -2.0 putative response regulator receiver protein compare
PP_0364 -1.1 -4.7 pimeloyl-[acp] methyl ester esterase compare
PP_1656 -1.1 -3.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_5639 -1.1 -4.6 conserved exported protein of unknown function compare
PP_1552 -1.1 -3.7 putative Phage replication protein compare
PP_5311 -1.1 -5.2 putative signal transduction protein compare
PP_1672 -1.1 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0261 -1.1 -4.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1664 -1.1 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0366 -1.1 -5.1 dethiobiotin synthetase compare
PP_3002 -1.1 -3.4 shikimate dehydrogenase-related enzyme compare
PP_4004 -1.1 -3.0 DNA translocase FtsK compare
PP_0365 -1.1 -4.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -1.1 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1013 -1.1 -5.5 Sensor histidine kinase compare
PP_2302 -1.1 -3.9 DNA-binding, ATP-dependent protease compare
PP_1426 -1.1 -6.4 L-aspartate oxidase compare
PP_1017 -1.1 -4.7 mannose/glucose ABC transporter, permease protein compare
PP_3808 -1.1 -2.1 Antibiotic synthesis protein MbtH compare
PP_5028 -1.1 -2.9 proline iminopeptidase compare
PP_0048 -1.1 -1.4 conserved protein of unknown function compare
PP_1681 -1.0 -6.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4964 -1.0 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4895 -1.0 -1.6 tRNA dimethylallyltransferase compare
PP_4693 -1.0 -2.8 RNA polymerase-binding transcription factor DksA compare
PP_1703 -1.0 -7.2 assimilatory nitrate reductase/sulfite reductase conserved
PP_1054 -1.0 -2.3 Type II secretion pathway protein XcpZ compare
PP_4828 -1.0 -1.1 Precorrin-8X methylmutase compare
PP_1878 -1.0 -5.3 conserved protein of unknown function compare
PP_3508 -1.0 -2.3 Protein CobW compare
PP_0377 -1.0 -1.8 coenzyme PQQ synthesis protein D compare
PP_4227 -1.0 -1.7 conserved protein of unknown function compare
PP_4829 -1.0 -3.1 putative precorrin-3B synthase compare
PP_2090 -1.0 -2.9 Uroporphyrinogen-III C-methyltransferase compare
PP_0789 -1.0 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1233 -1.0 -2.9 sulfurtransferase compare
PP_0122 -1.0 -2.1 conserved exported protein of unknown function compare
PP_1366 -1.0 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_4830 -0.9 -3.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_1216 -0.9 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5324 -0.9 -1.7 Response regulator compare
PP_2253 -0.9 -0.8 Transcriptional regulator, GntR family compare
PP_1655 -0.9 -1.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0153 -0.9 -2.2 hypothetical protein compare
PP_2750 -0.9 -2.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3507 -0.9 -6.0 Aerobic cobaltochelatase subunit CobN compare
PP_1675 -0.9 -4.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1292 -0.9 -3.2 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_2044 -0.9 -1.0 conserved inner membrane protein of unknown function compare
PP_5104 -0.9 -4.3 thiazole synthase compare
PP_1855 -0.9 -2.4 conserved exported protein of unknown function compare
PP_1783 -0.9 -1.2 dTDP-glucose pyrophosphorylase compare
PP_3539 -0.9 -2.0 putative Transcriptional regulator compare
PP_0547 -0.8 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1679 -0.8 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1826 -0.8 -1.7 Hydrolase, isochorismatase family compare
PP_4273 -0.8 -1.5 Transcriptional regulator, MerR family compare
PP_4546 -0.8 -2.3 ATP-dependent helicase HrpA compare
PP_1016 -0.8 -4.4 mannose/glucose ABC transporter, permease protein compare
PP_4333 -0.8 -3.4 CheW domain protein compare
PP_4392 -0.8 -3.4 chemotaxis protein methyltransferase compare
PP_3563 -0.8 -3.1 conserved exported protein of unknown function compare
PP_1739 -0.8 -1.0 conserved membrane protein of unknown function compare
PP_4521 -0.8 -5.5 putative aerotaxis receptor compare
PP_1348 -0.8 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5007 -0.8 -1.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4832 -0.8 -2.5 Precorrin-6x reductase compare
PP_5327 -0.8 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_0339 -0.8 -0.5 Pyruvate dehydrogenase E1 component compare
PP_2122 -0.8 -1.7 molybdenum cofactor biosynthesis protein B compare
PP_1176 -0.8 -0.9 conserved protein of unknown function compare
PP_5448 -0.8 -2.3 conserved protein of unknown function compare
PP_1018 -0.8 -4.0 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1294 -0.8 -2.6 molybdopterin synthase large subunit compare
PP_1099 -0.7 -1.3 Cold shock protein CapB compare
PP_5233 -0.7 -3.8 ammonium transporter AmtB compare
PP_4334 -0.7 -4.9 ParA family protein compare
PP_1736 -0.7 -2.2 conserved protein of unknown function compare
PP_4349 -0.7 -3.4 conserved protein of unknown function compare
PP_5227 -0.7 -3.5 diaminopimelate decarboxylase compare
PP_2145 -0.7 -1.9 beta-N-acetylglucosaminidase compare
PP_0090 -0.7 -3.0 conserved exported protein of unknown function compare
PP_4826 -0.7 -3.3 Precorrin-3B C17-methyltransferase compare
PP_0513 -0.7 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4503 -0.7 -2.1 DNA-binding response regulator compare
PP_4008 -0.7 -2.8 ATP-dependent serine protease compare
PP_4098 -0.7 -1.0 UvrABC system protein C compare
PP_4827 -0.7 -4.2 Precorrin-2 C(20)-methyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms