Experiment set22IT067 for Pseudomonas putida KT2440

Compare to:

no extra nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.7 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1995 -4.7 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -4.7 -8.4 tryptophan synthase alpha chain compare
PP_2168 -4.7 -14.4 Transaldolase compare
PP_4890 -4.5 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -4.4 -14.5 Histidinol dehydrogenase compare
PP_5014 -4.3 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4804 -4.2 -2.9 RlpA-like lipoprotein compare
PP_1589 -4.2 -12.2 uridylyltransferase compare
PP_5098 -4.1 -11.4 methionine biosynthesis protein MetW compare
PP_0083 -4.0 -9.4 tryptophan synthase beta chain compare
PP_0422 -3.9 -7.5 Indole-3-glycerol phosphate synthase compare
PP_0967 -3.6 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0965 -3.6 -11.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -3.6 -5.6 Acetylglutamate kinase compare
PP_4696 -3.6 -6.9 Nitrogen regulation protein NR(I) compare
PP_2328 -3.6 -8.8 Phosphoadenosine phosphosulfate reductase compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_3999 -3.5 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0420 -3.4 -13.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -3.4 -13.9 homoserine O-acetyltransferase compare
PP_5048 -3.4 -9.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1088 -3.4 -12.5 Argininosuccinate synthase compare
PP_0417 -3.3 -16.2 Anthranilate synthase component 1 compare
PP_5015 -3.3 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -3.3 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2327 -3.2 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2371 -3.2 -8.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4678 -3.2 -13.4 Ketol-acid reductoisomerase compare
PP_4338 -3.1 -12.9 Chemotaxis histidine kinase CheA compare
PP_1986 -3.1 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_1025 -3.1 -13.0 2-isopropylmalate synthase compare
PP_5347 -3.1 -13.4 pyruvate carboxylase subunit A compare
PP_4902 -3.1 -4.1 Oligoribonuclease compare
PP_4340 -3.1 -4.9 response regulator for chemotactic signal transduction compare
PP_0289 -3.1 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -3.1 -9.2 3-isopropylmalate dehydrogenase compare
PP_1022 -3.0 -6.6 glucose 6-phosphate-1-dehydrogenase compare
PP_3511 -3.0 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_5075 -3.0 -13.8 glutamate synthase (NADPH) beta subunit compare
PP_0184 -3.0 -8.0 Argininosuccinate lyase compare
PP_1985 -2.9 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_2370 -2.9 -5.0 conserved protein of unknown function compare
PP_1079 -2.8 -7.2 Ornithine carbamoyltransferase compare
PP_2001 -2.8 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_5047 -2.8 -5.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4785 -2.8 -7.4 conserved exported protein of unknown function compare
PP_1705 -2.8 -10.0 nitrite reductase [NAD(P)H] large subunit conserved
PP_0421 -2.7 -8.2 Anthranilate phosphoribosyltransferase compare
PP_4680 -2.6 -12.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1362 -2.6 -5.2 pyruvate kinase II compare
PP_5076 -2.6 -16.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_2088 -2.6 -2.6 RNA polymerase sigma factor SigX compare
PP_2093 -2.5 -10.2 NasT conserved
PP_4058 -2.5 -10.0 1,4-alpha-glucan branching enzyme compare
PP_5128 -2.4 -8.1 Dihydroxy-acid dehydratase compare
PP_4700 -2.4 -2.3 pantothenate synthetase compare
PP_4679 -2.4 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -2.4 -7.2 pyruvate carboxylase subunit B compare
PP_2092 -2.4 -11.2 Nitrate transporter conserved
PP_4909 -2.4 -7.0 phosphoserine phosphatase compare
PP_1231 -2.3 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0292 -2.3 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5348 -2.3 -8.4 Transcriptional regulator, LysR family compare
PP_5185 -2.2 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5303 -2.2 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -2.2 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5155 -2.2 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1706 -2.1 -4.8 Nitrite reductase compare
PP_1898 -2.1 -5.7 MotA/TolQ/ExbB proton channel family protein compare
PP_1734 -2.1 -5.2 Probable septum site-determining protein MinC compare
PP_5217 -2.1 -11.5 Polyphosphate kinase compare
PP_5331 -2.0 -4.7 Long-chain acyl-CoA thioester hydrolase compare
PP_1304 -2.0 -9.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4964 -1.9 -4.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4977 -1.9 -9.6 5,10-methylenetetrahydrofolate reductase compare
PP_1826 -1.8 -4.2 Hydrolase, isochorismatase family compare
PP_4994 -1.8 -5.9 conserved protein of unknown function compare
PP_3417 -1.8 -5.4 D-gluconate transporter compare
PP_5350 -1.7 -3.8 Transcriptional regulator, RpiR family compare
PP_0291 -1.7 -1.8 conserved protein of unknown function compare
PP_2375 -1.7 -11.1 cobalamin-dependent methionine synthase compare
PP_5328 -1.7 -2.5 putative phosphate transport system permease protein compare
PP_2094 -1.6 -5.1 putative Nitrate-binding protein NasS conserved
PP_2378 -1.6 -3.2 Fe/S biogenesis protein NfuA compare
PP_4693 -1.5 -4.4 RNA polymerase-binding transcription factor DksA compare
PP_5230 -1.5 -4.2 Tyrosine recombinase XerC compare
PP_2302 -1.5 -5.8 DNA-binding, ATP-dependent protease compare
PP_4126 -1.5 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_1303 -1.5 -6.9 Sulfate adenylyltransferase subunit 2 compare
PP_1733 -1.5 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5203 -1.5 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_0547 -1.4 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0022 -1.4 -1.6 hypothetical protein compare
PP_3241 -1.4 -2.1 conserved exported protein of unknown function compare
PP_0362 -1.4 -8.5 Biotin synthase compare
PP_0393 -1.4 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3506 -1.4 -4.0 Magnesium chelatase, subunit ChII compare
PP_0833 -1.4 -1.5 queuine tRNA-ribosyltransferase compare
PP_1656 -1.4 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_0364 -1.3 -6.5 pimeloyl-[acp] methyl ester esterase compare
PP_0406 -1.3 -3.2 Nucleotidyltransferase family protein compare
PP_1673 -1.3 -5.5 cobyrinate a,c-diamide synthase compare
PP_4480 -1.3 -5.9 arginine N-succinyltransferase, subunit alpha compare
PP_4332 -1.3 -3.4 Chemotaxis protein CheW compare
PP_5095 -1.3 -1.4 pyrroline-5-carboxylate reductase compare
PP_5327 -1.2 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_1426 -1.2 -8.8 L-aspartate oxidase compare
PP_0363 -1.2 -8.5 8-amino-7-oxononanoate synthase compare
PP_1655 -1.2 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1672 -1.2 -4.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2122 -1.2 -3.8 molybdenum cofactor biosynthesis protein B compare
PP_4782 -1.2 -4.1 Phosphomethylpyrimidine kinase compare
PP_0365 -1.2 -7.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3307 -1.1 -2.7 conserved protein of unknown function compare
PP_0261 -1.1 -4.2 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1679 -1.1 -3.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2402 -1.1 -2.0 putative Sensor histidine kinase compare
PP_4699 -1.1 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4824 -1.1 -4.6 Sensor histidine kinase/response regulator compare
PP_4004 -1.1 -2.9 DNA translocase FtsK compare
PP_5104 -1.1 -5.8 thiazole synthase compare
PP_2123 -1.1 -6.0 molybdenum::molybdopterin ligase compare
PP_2140 -1.1 -3.5 conserved protein of unknown function compare
PP_4695 -1.1 -6.4 Sensory box histidine kinase compare
PP_1912 -1.1 -3.8 Phosphate acyltransferase compare
PP_1018 -1.0 -5.9 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1012 -1.0 -5.2 DNA-binding response regulator compare
PP_5329 -1.0 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1681 -1.0 -6.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1677 -1.0 -4.8 Adenosyl-cobyric acid synthase compare
PP_5508 -1.0 -1.6 conserved protein of unknown function compare
PP_0195 -1.0 -2.3 conserved protein of unknown function compare
PP_4832 -1.0 -3.4 Precorrin-6x reductase compare
PP_4830 -1.0 -4.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_0366 -1.0 -3.6 dethiobiotin synthetase compare
PP_3508 -1.0 -3.3 Protein CobW compare
PP_1675 -1.0 -5.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5701 -1.0 -2.3 conserved protein of unknown function compare
PP_1292 -1.0 -4.7 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_4521 -1.0 -7.0 putative aerotaxis receptor compare
PP_2253 -1.0 -1.5 Transcriptional regulator, GntR family compare
PP_4984 -1.0 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1217 -1.0 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5007 -1.0 -2.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3946 -1.0 -1.8 HTH-type transcriptional repressor NicR compare
PP_4392 -1.0 -5.3 chemotaxis protein methyltransferase compare
PP_4333 -0.9 -4.5 CheW domain protein compare
PP_0434 -0.9 -4.2 Anhydro-N-acetylmuramic acid kinase compare
PP_1011 -0.9 -5.4 glucokinase compare
PP_5114 -0.9 -1.6 putative adenine methyltransferase compare
PP_5639 -0.9 -4.4 conserved exported protein of unknown function compare
PP_5393 -0.9 -1.8 putative metal-binding chaperone compare
PP_1216 -0.9 -2.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1013 -0.9 -4.2 Sensor histidine kinase compare
PP_5SB -0.9 -2.5 5S ribosomal RNA compare
PP_0735 -0.9 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_0673 -0.9 -1.1 conserved protein of unknown function compare
PP_1294 -0.9 -3.7 molybdopterin synthase large subunit compare
PP_0846 -0.9 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_4268 -0.9 -1.6 nucleoid-associated broad specificity regulator compare
PP_4334 -0.9 -6.2 ParA family protein compare
PP_1764 -0.9 -2.4 Phosphoglycolate phosphatase 2 compare
PP_5610 -0.9 -2.1 protein of unknown function compare
PP_1016 -0.9 -5.0 mannose/glucose ABC transporter, permease protein compare
PP_0001 -0.9 -1.4 probable chromosome-partitioning protein compare
PP_3102 -0.8 -2.5 conserved protein of unknown function compare
PP_1017 -0.8 -4.2 mannose/glucose ABC transporter, permease protein compare
PP_1878 -0.8 -4.2 conserved protein of unknown function compare
PP_1664 -0.8 -1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2878 -0.8 -2.2 conserved protein of unknown function compare
PP_1293 -0.8 -2.0 molybdopterin synthase small subunit compare
PP_3507 -0.8 -5.7 Aerobic cobaltochelatase subunit CobN compare
PP_1097 -0.8 -1.2 Methionine--tRNA ligase compare
PP_0138 -0.8 -5.8 conserved membrane protein of unknown function compare
PP_2442 -0.8 -1.5 conserved protein of unknown function, DUF480 family compare
PP_1468 -0.8 -2.0 Tyrosine recombinase XerD compare
PP_1703 -0.8 -6.5 assimilatory nitrate reductase/sulfite reductase conserved
PP_5310 -0.8 -3.0 junction-specific ATP-dependent DNA helicase compare
PP_4724 -0.8 -0.5 Carbamoyl-phosphate synthase small chain compare
PP_2070 -0.8 -2.3 Transcriptional regulator, AraC family compare
PP_0789 -0.8 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5507 -0.8 -1.9 protein of unknown function compare
PP_3532 -0.8 -1.8 Transcriptional regulator, AsnC family compare
PP_1233 -0.8 -2.4 sulfurtransferase compare
PP_4532 -0.8 -2.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1215 -0.8 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_5311 -0.8 -3.9 putative signal transduction protein compare
PP_4560 -0.8 -1.7 putative Ribonuclease BN compare
PP_5233 -0.8 -4.2 ammonium transporter AmtB compare
PP_4993 -0.7 -3.2 Glutathione synthetase compare
PP_4074 -0.7 -3.2 conserved protein of unknown function compare
PP_5227 -0.7 -4.2 diaminopimelate decarboxylase compare
PP_2857 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4156 -0.7 -2.1 Transcriptional regulator, LysR family compare
PP_2433 -0.7 -1.1 conserved protein of unknown function compare
PP_2750 -0.7 -2.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0122 -0.7 -2.1 conserved exported protein of unknown function compare
PP_1015 -0.7 -3.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms