Experiment set22IT065 for Pseudomonas putida KT2440

Compare to:

N-Acetyl-D-Glucosamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1985 -6.6 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_5048 -5.9 -7.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1988 -5.4 -11.4 3-isopropylmalate dehydrogenase compare
PP_1589 -5.0 -10.2 uridylyltransferase compare
PP_1995 -4.9 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -4.9 -13.4 Transaldolase compare
PP_0966 -4.8 -12.0 Histidinol dehydrogenase compare
PP_0967 -4.8 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -4.8 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5098 -4.7 -9.3 methionine biosynthesis protein MetW compare
PP_1986 -4.6 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_0082 -4.5 -8.6 tryptophan synthase alpha chain compare
PP_0293 -4.5 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -4.3 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -4.2 -8.0 Phosphoadenosine phosphosulfate reductase compare
PP_4804 -4.2 -2.9 RlpA-like lipoprotein compare
PP_4678 -4.2 -14.2 Ketol-acid reductoisomerase compare
PP_2402 -4.1 -2.8 putative Sensor histidine kinase compare
PP_0787 -4.1 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0083 -4.1 -8.4 tryptophan synthase beta chain compare
PP_0420 -4.1 -9.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -4.0 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_1079 -4.0 -7.6 Ornithine carbamoyltransferase compare
PP_0289 -3.9 -7.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -3.9 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -3.8 -6.9 Branched-chain-amino-acid aminotransferase compare
PP_0422 -3.8 -6.4 Indole-3-glycerol phosphate synthase compare
PP_5076 -3.8 -17.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_5014 -3.7 -3.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2371 -3.7 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -3.7 -8.2 phosphoserine phosphatase compare
PP_4680 -3.6 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -3.6 -10.9 homoserine O-acetyltransferase compare
PP_3999 -3.6 -10.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5331 -3.6 -5.4 Long-chain acyl-CoA thioester hydrolase compare
PP_2327 -3.4 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4890 -3.4 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5346 -3.4 -7.8 pyruvate carboxylase subunit B compare
PP_1025 -3.4 -11.4 2-isopropylmalate synthase compare
PP_4994 -3.4 -6.3 conserved protein of unknown function compare
PP_1237 -3.4 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2093 -3.3 -7.8 NasT conserved
PP_0417 -3.3 -13.5 Anthranilate synthase component 1 compare
PP_5128 -3.3 -7.5 Dihydroxy-acid dehydratase compare
PP_1231 -3.3 -6.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5185 -3.2 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -3.2 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4785 -3.1 -6.4 conserved exported protein of unknown function compare
PP_5047 -3.1 -5.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0184 -3.0 -7.1 Argininosuccinate lyase compare
PP_5075 -3.0 -9.4 glutamate synthase (NADPH) beta subunit compare
PP_4829 -2.9 -5.9 putative precorrin-3B synthase compare
PP_5155 -2.9 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1088 -2.9 -9.7 Argininosuccinate synthase compare
PP_5202 -2.8 -3.8 putative cell division protein compare
PP_4679 -2.8 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -2.7 -6.2 Nitrogen regulation protein NR(I) compare
PP_2092 -2.7 -9.0 Nitrate transporter conserved
PP_1706 -2.7 -4.5 Nitrite reductase compare
PP_4338 -2.6 -8.6 Chemotaxis histidine kinase CheA compare
PP_0421 -2.6 -5.8 Anthranilate phosphoribosyltransferase compare
PP_1705 -2.6 -7.4 nitrite reductase [NAD(P)H] large subunit conserved
PP_0846 -2.6 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_1733 -2.5 -4.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_1293 -2.5 -2.2 molybdopterin synthase small subunit compare
PP_4902 -2.5 -3.5 Oligoribonuclease compare
PP_1898 -2.4 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5347 -2.4 -7.9 pyruvate carboxylase subunit A compare
PP_5327 -2.4 -4.6 putative phosphate ABC transporter, permease subunit compare
PP_0593 -2.4 -1.4 putative ribosome-binding factor compare
PP_0888 -2.3 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1022 -2.3 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5348 -2.3 -6.4 Transcriptional regulator, LysR family compare
PP_5303 -2.2 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4824 -2.2 -7.8 Sensor histidine kinase/response regulator compare
PP_1826 -2.2 -2.8 Hydrolase, isochorismatase family compare
PP_1734 -2.2 -4.1 Probable septum site-determining protein MinC compare
PP_5289 -2.2 -3.4 Acetylglutamate kinase compare
PP_2088 -2.2 -3.3 RNA polymerase sigma factor SigX compare
PP_5350 -2.0 -3.9 Transcriptional regulator, RpiR family compare
PP_4340 -2.0 -4.9 response regulator for chemotactic signal transduction compare
PP_2378 -2.0 -2.5 Fe/S biogenesis protein NfuA compare
PP_4058 -2.0 -7.4 1,4-alpha-glucan branching enzyme compare
PP_1362 -1.9 -3.4 pyruvate kinase II compare
PP_4699 -1.9 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2370 -1.9 -2.3 conserved protein of unknown function compare
PP_1304 -1.8 -6.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2375 -1.8 -9.8 cobalamin-dependent methionine synthase compare
PP_3505 -1.8 -2.2 conserved protein of unknown function compare
PP_5329 -1.8 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1783 -1.8 -2.2 dTDP-glucose pyrophosphorylase compare
PP_5217 -1.7 -7.5 Polyphosphate kinase compare
PP_0719 -1.7 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2302 -1.7 -4.5 DNA-binding, ATP-dependent protease compare
PP_1683 -1.7 -2.4 Transcriptional regulator, MarR family compare
PP_2414 -1.7 -2.3 conserved exported protein of unknown function compare
PP_1198 -1.6 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3417 -1.6 -3.5 D-gluconate transporter compare
PP_2094 -1.6 -3.3 putative Nitrate-binding protein NasS conserved
PP_5508 -1.6 -1.6 conserved protein of unknown function compare
PP_4693 -1.5 -4.2 RNA polymerase-binding transcription factor DksA compare
PP_4332 -1.5 -3.1 Chemotaxis protein CheW compare
PP_1664 -1.5 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0735 -1.5 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4828 -1.5 -1.5 Precorrin-8X methylmutase compare
PP_1656 -1.4 -4.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_4830 -1.4 -3.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_1764 -1.4 -2.6 Phosphoglycolate phosphatase 2 compare
PP_4977 -1.4 -4.9 5,10-methylenetetrahydrofolate reductase compare
PP_5203 -1.4 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_4073 -1.4 -2.3 conserved exported protein of unknown function compare
PP_1176 -1.4 -1.4 conserved protein of unknown function compare
PP_0775 -1.3 -1.2 conserved protein of unknown function compare
PP_2307 -1.3 -1.5 conserved protein of unknown function compare
PP_1233 -1.3 -2.4 sulfurtransferase compare
PP_0725 -1.3 -3.6 conserved hypothetical TPR repeat protein compare
PP_0246 -1.3 -3.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_0362 -1.3 -6.1 Biotin synthase compare
PP_1677 -1.3 -3.3 Adenosyl-cobyric acid synthase compare
PP_4642 -1.3 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_3506 -1.3 -4.7 Magnesium chelatase, subunit ChII compare
PP_0291 -1.3 -1.5 conserved protein of unknown function compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_5644 -1.3 -2.3 conserved membrane protein of unknown function compare
PP_0547 -1.3 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2403 -1.3 -1.7 Chemotaxis protein CheY compare
PP_4004 -1.3 -3.7 DNA translocase FtsK compare
PP_0406 -1.3 -1.8 Nucleotidyltransferase family protein compare
PP_4268 -1.3 -1.4 nucleoid-associated broad specificity regulator compare
PP_5310 -1.3 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_2123 -1.3 -5.5 molybdenum::molybdopterin ligase compare
PP_4480 -1.2 -4.9 arginine N-succinyltransferase, subunit alpha compare
PP_2341 -1.2 -2.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1292 -1.2 -3.8 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1426 -1.2 -6.6 L-aspartate oxidase compare
PP_2136 -1.2 -3.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3808 -1.2 -2.0 Antibiotic synthesis protein MbtH compare
PP_0363 -1.2 -6.3 8-amino-7-oxononanoate synthase compare
PP_0566 -1.2 -1.2 translation-related factor compare
PP_t10 -1.2 -1.5 tRNA-Pro compare
PP_1054 -1.2 -1.3 Type II secretion pathway protein XcpZ compare
PP_4131 -1.1 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_4045 -1.1 -1.9 conserved protein of unknown function compare
PP_5507 -1.1 -2.5 protein of unknown function compare
PP_1834 -1.1 -3.5 conserved protein of unknown function compare
PP_4695 -1.1 -5.6 Sensory box histidine kinase compare
PP_4895 -1.1 -1.9 tRNA dimethylallyltransferase compare
PP_3726 -1.1 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_0364 -1.1 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_4262 -1.0 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5104 -1.0 -5.3 thiazole synthase compare
PP_3411 -1.0 -1.6 conserved protein of unknown function compare
PP_1186 -1.0 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_5328 -1.0 -1.7 putative phosphate transport system permease protein compare
PP_1808 -1.0 -1.9 glucose-6-phosphate isomerase compare
PP_1703 -1.0 -6.3 assimilatory nitrate reductase/sulfite reductase conserved
PP_4738 -1.0 -3.2 conserved exported protein of unknown function compare
PP_1269 -1.0 -1.1 Universal stress protein family compare
PP_4054 -1.0 -1.5 conserved protein of unknown function compare
PP_3821 -1.0 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1011 -1.0 -5.2 glucokinase compare
PP_0962 -1.0 -1.8 toluene-tolerance protein compare
PP_0393 -1.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2107 -1.0 -1.7 conserved protein of unknown function compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_2087 -1.0 -1.9 CmpX protein compare
PP_2581 -1.0 -1.1 conserved protein of unknown function compare
PP_1303 -1.0 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_4984 -1.0 -5.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2217 -1.0 -1.5 enoyl-CoA hydratase compare
PP_1655 -1.0 -1.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1018 -0.9 -2.8 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0401 -0.9 -1.6 Ribosomal RNA small subunit methyltransferase A compare
PP_5168 -0.9 -1.7 sulfate/thiosulfate import ATP-binding protein compare
PP_0065 -0.9 -2.3 NAD-binding component of TrK potassium transporter compare
PP_0673 -0.9 -2.2 conserved protein of unknown function compare
PP_1912 -0.9 -2.2 Phosphate acyltransferase compare
PP_0833 -0.9 -0.9 queuine tRNA-ribosyltransferase compare
PP_3508 -0.9 -2.0 Protein CobW compare
PP_2903 -0.9 -1.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0138 -0.9 -4.4 conserved membrane protein of unknown function compare
PP_5639 -0.9 -4.6 conserved exported protein of unknown function compare
PP_5272 -0.9 -3.7 conserved protein of unknown function compare
PP_3002 -0.9 -1.9 shikimate dehydrogenase-related enzyme compare
PP_0122 -0.9 -1.7 conserved exported protein of unknown function compare
PP_0319 -0.9 -1.3 conserved protein of unknown function compare
PP_5453 -0.9 -1.5 conserved protein of unknown function compare
PP_5028 -0.9 -2.1 proline iminopeptidase compare
PP_4329 -0.9 -2.8 FlhB domain protein compare
PP_1017 -0.9 -3.3 mannose/glucose ABC transporter, permease protein compare
PP_1016 -0.9 -5.0 mannose/glucose ABC transporter, permease protein compare
PP_1654 -0.9 -1.5 cysteine synthase B compare
PP_0339 -0.9 -0.6 Pyruvate dehydrogenase E1 component compare
PP_0377 -0.9 -1.5 coenzyme PQQ synthesis protein D compare
PP_2970 -0.8 -2.2 conserved exported protein of unknown function compare
PP_3507 -0.8 -5.2 Aerobic cobaltochelatase subunit CobN compare
PP_2575 -0.8 -1.4 conserved exported protein of unknown function compare
PP_1294 -0.8 -2.3 molybdopterin synthase large subunit compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms