Experiment set22IT064 for Pseudomonas putida KT2440

Compare to:

N-Acetyl-D-Glucosamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1986 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_5048 -5.3 -6.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2328 -5.2 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_5014 -4.9 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1589 -4.9 -10.9 uridylyltransferase compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_0082 -4.8 -8.0 tryptophan synthase alpha chain compare
PP_0735 -4.4 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_4678 -4.4 -13.4 Ketol-acid reductoisomerase compare
PP_1988 -4.3 -8.4 3-isopropylmalate dehydrogenase compare
PP_5097 -4.3 -11.3 homoserine O-acetyltransferase compare
PP_1995 -4.3 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -4.3 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2092 -4.2 -10.4 Nitrate transporter conserved
PP_5075 -4.1 -11.7 glutamate synthase (NADPH) beta subunit compare
PP_0966 -4.1 -9.4 Histidinol dehydrogenase compare
PP_0967 -4.1 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -4.1 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_2402 -4.1 -2.8 putative Sensor histidine kinase compare
PP_5346 -4.1 -7.8 pyruvate carboxylase subunit B compare
PP_2168 -4.1 -9.9 Transaldolase compare
PP_5015 -3.9 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -3.9 -4.4 Ornithine carbamoyltransferase compare
PP_1706 -3.9 -4.5 Nitrite reductase compare
PP_4785 -3.8 -6.4 conserved exported protein of unknown function compare
PP_4338 -3.8 -8.2 Chemotaxis histidine kinase CheA compare
PP_4890 -3.8 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_3999 -3.7 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5047 -3.6 -5.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0420 -3.6 -7.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1985 -3.6 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_4680 -3.5 -11.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -3.5 -9.9 pyruvate carboxylase subunit A compare
PP_0184 -3.5 -6.5 Argininosuccinate lyase compare
PP_2001 -3.5 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_2093 -3.5 -7.3 NasT conserved
PP_2327 -3.5 -6.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2371 -3.5 -5.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -3.4 -9.9 Argininosuccinate synthase compare
PP_5185 -3.4 -5.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1994 -3.4 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_1654 -3.4 -3.3 cysteine synthase B compare
PP_0965 -3.4 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1025 -3.3 -11.4 2-isopropylmalate synthase compare
PP_5348 -3.3 -7.7 Transcriptional regulator, LysR family compare
PP_1705 -3.3 -8.6 nitrite reductase [NAD(P)H] large subunit conserved
PP_0417 -3.2 -12.3 Anthranilate synthase component 1 compare
PP_0421 -3.2 -7.0 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.2 -6.5 Dihydroxy-acid dehydratase compare
PP_5098 -3.2 -5.7 methionine biosynthesis protein MetW compare
PP_4909 -3.2 -7.4 phosphoserine phosphatase compare
PP_1898 -3.1 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0001 -3.0 -2.5 probable chromosome-partitioning protein compare
PP_5076 -2.9 -12.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_2094 -2.8 -7.8 putative Nitrate-binding protein NasS conserved
PP_4122 -2.8 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2370 -2.8 -2.8 conserved protein of unknown function compare
PP_1022 -2.7 -6.0 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -2.7 -3.4 conserved protein of unknown function compare
PP_0422 -2.7 -3.1 Indole-3-glycerol phosphate synthase compare
PP_0513 -2.7 -3.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5303 -2.7 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3511 -2.7 -6.0 Branched-chain-amino-acid aminotransferase compare
PP_4828 -2.5 -1.9 Precorrin-8X methylmutase compare
PP_4804 -2.5 -3.8 RlpA-like lipoprotein compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_2378 -2.5 -3.3 Fe/S biogenesis protein NfuA compare
PP_1233 -2.4 -3.7 sulfurtransferase compare
PP_0293 -2.4 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1362 -2.4 -4.1 pyruvate kinase II compare
PP_5155 -2.4 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1664 -2.4 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1733 -2.4 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_0855 -2.3 -2.7 conserved protein of unknown function compare
PP_4263 -2.3 -3.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4058 -2.3 -7.2 1,4-alpha-glucan branching enzyme compare
PP_3449 -2.3 -3.2 conserved exported protein of unknown function compare
PP_4124 -2.3 -5.1 NADH-quinone oxidoreductase subunit G compare
PP_0292 -2.2 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0787 -2.2 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1231 -2.2 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3946 -2.2 -1.7 HTH-type transcriptional repressor NicR compare
PP_4268 -2.2 -1.8 nucleoid-associated broad specificity regulator compare
PP_1215 -2.2 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4874 -2.1 -1.7 50S ribosomal protein L9 compare
PP_5331 -2.1 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_5327 -2.0 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_4902 -2.0 -2.4 Oligoribonuclease compare
PP_2581 -2.0 -1.9 conserved protein of unknown function compare
PP_5533 -2.0 -1.9 conserved protein of unknown function compare
PP_4532 -2.0 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2302 -1.9 -5.0 DNA-binding, ATP-dependent protease compare
PP_4340 -1.9 -2.3 response regulator for chemotactic signal transduction compare
PP_4679 -1.9 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4782 -1.9 -3.1 Phosphomethylpyrimidine kinase compare
PP_4120 -1.8 -3.8 NADH-quinone oxidoreductase subunit B compare
PP_1764 -1.8 -2.7 Phosphoglycolate phosphatase 2 compare
PP_4994 -1.8 -5.5 conserved protein of unknown function compare
PP_2217 -1.8 -3.9 enoyl-CoA hydratase compare
PP_2145 -1.7 -2.4 beta-N-acetylglucosaminidase compare
PP_1672 -1.7 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2088 -1.7 -1.5 RNA polymerase sigma factor SigX compare
PP_4129 -1.7 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5217 -1.7 -6.5 Polyphosphate kinase compare
PP_5202 -1.7 -1.5 putative cell division protein compare
PP_5203 -1.7 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_t12 -1.6 -1.2 tRNA-Thr compare
PP_3971 -1.6 -1.9 conserved protein of unknown function compare
PP_5093 -1.6 -1.6 twitching motility protein compare
PP_1679 -1.5 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2375 -1.5 -7.1 cobalamin-dependent methionine synthase compare
PP_1216 -1.5 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1294 -1.5 -2.9 molybdopterin synthase large subunit compare
PP_5017 -1.5 -1.2 Sec-independent protein translocase protein TatB compare
PP_4824 -1.5 -4.9 Sensor histidine kinase/response regulator compare
PP_5289 -1.5 -2.5 Acetylglutamate kinase compare
PP_1656 -1.5 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4332 -1.5 -4.1 Chemotaxis protein CheW compare
PP_1208 -1.4 -1.7 conserved protein of unknown function, SlyX family compare
PP_4480 -1.4 -5.5 arginine N-succinyltransferase, subunit alpha compare
PP_4045 -1.4 -2.5 conserved protein of unknown function compare
PP_3409 -1.4 -1.4 putative Cobalamin biosynthesis protein cobE compare
PP_4254 -1.4 -2.2 conserved protein of unknown function compare
PP_1304 -1.4 -5.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2794 -1.4 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4830 -1.4 -4.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_4597 -1.3 -3.4 Cyclic pyranopterin monophosphate synthase compare
PP_4977 -1.3 -5.1 5,10-methylenetetrahydrofolate reductase compare
PP_4832 -1.3 -2.7 Precorrin-6x reductase compare
PP_2123 -1.3 -5.4 molybdenum::molybdopterin ligase compare
PP_3508 -1.3 -2.8 Protein CobW compare
PP_0775 -1.3 -1.5 conserved protein of unknown function compare
PP_0547 -1.3 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4984 -1.3 -5.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3506 -1.3 -2.4 Magnesium chelatase, subunit ChII compare
PP_4964 -1.3 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5350 -1.3 -2.4 Transcriptional regulator, RpiR family compare
PP_5310 -1.3 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_1734 -1.2 -2.3 Probable septum site-determining protein MinC compare
PP_5639 -1.2 -5.3 conserved exported protein of unknown function compare
PP_4529 -1.2 -2.9 conserved protein of unknown function compare
PP_1292 -1.2 -3.8 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_0846 -1.2 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_3417 -1.2 -2.8 D-gluconate transporter compare
PP_4738 -1.2 -2.6 conserved exported protein of unknown function compare
PP_3034 -1.1 -2.2 putative Regulator protein compare
PP_0782 -1.1 -3.1 conserved protein of unknown function compare
PP_2429 -1.1 -1.6 putative Membrane protein compare
PP_4695 -1.1 -5.4 Sensory box histidine kinase compare
PP_5095 -1.1 -1.0 pyrroline-5-carboxylate reductase compare
PP_5519 -1.1 -2.7 conserved protein of unknown function of phage origin compare
PP_4895 -1.1 -2.2 tRNA dimethylallyltransferase compare
PP_0630 -1.1 -1.0 DNA gyrase inhibitor YacG compare
PP_0362 -1.1 -5.0 Biotin synthase compare
PP_5456 -1.1 -1.2 conserved protein of unknown function compare
PP_4826 -1.1 -2.8 Precorrin-3B C17-methyltransferase compare
PP_1544 -1.1 -3.1 conserved protein of unknown function compare
PP_4699 -1.1 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0640 -1.1 -1.4 conserved protein of unknown function compare
PP_1468 -1.1 -1.7 Tyrosine recombinase XerD compare
PP_0833 -1.1 -1.3 queuine tRNA-ribosyltransferase compare
PP_1303 -1.1 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_2214 -1.1 -3.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1366 -1.1 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1675 -1.1 -4.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5393 -1.0 -1.1 putative metal-binding chaperone compare
PP_5227 -1.0 -3.8 diaminopimelate decarboxylase compare
PP_1676 -1.0 -2.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5090 -1.0 -1.6 putative cell division protein compare
PP_0962 -1.0 -1.5 toluene-tolerance protein compare
PP_4981 -1.0 -1.1 polyisoprene-binding protein, acidic stress response factor compare
PP_1176 -1.0 -1.1 conserved protein of unknown function compare
PP_1655 -1.0 -1.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0365 -1.0 -3.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0725 -1.0 -3.1 conserved hypothetical TPR repeat protein compare
PP_3035 -1.0 -1.8 conserved protein of unknown function compare
PP_4227 -1.0 -0.9 conserved protein of unknown function compare
PP_1826 -1.0 -1.3 Hydrolase, isochorismatase family compare
PP_0138 -1.0 -3.7 conserved membrane protein of unknown function compare
PP_1074 -1.0 -3.3 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4308 -1.0 -2.5 Transcriptional regulator, AsnC family compare
PP_4936 -1.0 -4.4 O-antigen polymerase compare
PP_5022 -1.0 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_4333 -1.0 -2.8 CheW domain protein compare
PP_5507 -1.0 -1.9 protein of unknown function compare
PP_4109 -1.0 -1.5 conserved protein of unknown function compare
PP_4130 -1.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0593 -1.0 -0.8 putative ribosome-binding factor compare
PP_3505 -1.0 -1.3 conserved protein of unknown function compare
PP_0393 -1.0 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2226 -0.9 -2.0 putative K(+)/H(+) antiporter subunit F compare
PP_5628 -0.9 -2.6 conserved protein of unknown function compare
PP_3411 -0.9 -1.3 conserved protein of unknown function compare
PP_1217 -0.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1426 -0.9 -4.2 L-aspartate oxidase compare
PP_3105 -0.9 -1.1 conserved membrane protein of unknown function compare
PP_5652 -0.9 -1.2 conserved protein of unknown function, phage origin compare
PP_1673 -0.9 -2.1 cobyrinate a,c-diamide synthase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms