Experiment set22IT063 for Pseudomonas putida KT2440

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.1 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.4 -6.4 tryptophan synthase alpha chain compare
PP_1988 -5.2 -9.2 3-isopropylmalate dehydrogenase compare
PP_0083 -5.1 -7.0 tryptophan synthase beta chain compare
PP_1986 -4.9 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_0184 -4.8 -8.0 Argininosuccinate lyase compare
PP_2371 -4.8 -7.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -4.8 -10.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_0421 -4.6 -8.1 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.6 -7.8 methionine biosynthesis protein MetW compare
PP_0422 -4.6 -5.3 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.5 -10.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -4.5 -9.8 Transaldolase compare
PP_4785 -4.4 -10.6 conserved exported protein of unknown function compare
PP_5015 -4.3 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0965 -4.3 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2327 -4.2 -7.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5048 -4.2 -7.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4902 -4.1 -2.8 Oligoribonuclease compare
PP_3999 -4.1 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0787 -4.1 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -4.0 -7.7 Ornithine carbamoyltransferase compare
PP_0966 -4.0 -10.0 Histidinol dehydrogenase compare
PP_5097 -4.0 -14.6 homoserine O-acetyltransferase compare
PP_0420 -4.0 -10.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -4.0 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_5075 -4.0 -12.8 glutamate synthase (NADPH) beta subunit compare
PP_1231 -3.9 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4890 -3.9 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -3.9 -15.4 Anthranilate synthase component 1 compare
PP_5185 -3.8 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1985 -3.8 -5.6 3-isopropylmalate dehydratase large subunit compare
PP_2370 -3.8 -5.1 conserved protein of unknown function compare
PP_1589 -3.7 -12.3 uridylyltransferase compare
PP_5128 -3.7 -7.8 Dihydroxy-acid dehydratase compare
PP_5076 -3.7 -17.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_5014 -3.7 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -3.6 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4678 -3.5 -12.5 Ketol-acid reductoisomerase compare
PP_1025 -3.5 -12.0 2-isopropylmalate synthase compare
PP_4680 -3.5 -12.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.4 -10.7 Argininosuccinate synthase compare
PP_0292 -3.4 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5217 -3.3 -10.4 Polyphosphate kinase compare
PP_2328 -3.3 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_4909 -3.3 -8.3 phosphoserine phosphatase compare
PP_3511 -3.2 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_4679 -3.2 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5303 -3.1 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5289 -3.1 -3.4 Acetylglutamate kinase compare
PP_1216 -3.1 -3.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4874 -3.0 -2.0 50S ribosomal protein L9 compare
PP_5155 -2.9 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1362 -2.9 -5.4 pyruvate kinase II compare
PP_3505 -2.9 -3.2 conserved protein of unknown function compare
PP_2093 -2.8 -8.7 NasT conserved
PP_2378 -2.8 -3.7 Fe/S biogenesis protein NfuA compare
PP_5347 -2.7 -8.9 pyruvate carboxylase subunit A compare
PP_5047 -2.6 -6.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0735 -2.6 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_2302 -2.5 -6.4 DNA-binding, ATP-dependent protease compare
PP_t29 -2.4 -3.2 tRNA-Ala compare
PP_1426 -2.3 -10.2 L-aspartate oxidase compare
PP_0406 -2.3 -3.1 Nucleotidyltransferase family protein compare
PP_1764 -2.3 -4.0 Phosphoglycolate phosphatase 2 compare
PP_1654 -2.3 -3.7 cysteine synthase B compare
PP_1022 -2.2 -5.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4129 -2.2 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5346 -2.2 -6.3 pyruvate carboxylase subunit B compare
PP_0291 -2.2 -2.5 conserved protein of unknown function compare
PP_4122 -2.1 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4700 -2.1 -2.5 pantothenate synthetase compare
PP_5350 -2.1 -3.9 Transcriptional regulator, RpiR family compare
PP_1706 -2.1 -4.5 Nitrite reductase compare
PP_5348 -2.1 -6.4 Transcriptional regulator, LysR family compare
PP_4126 -2.1 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_4964 -2.1 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1672 -2.0 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4699 -2.0 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3506 -2.0 -2.4 Magnesium chelatase, subunit ChII compare
PP_1906 -2.0 -3.6 ribosomal large subunit pseudouridine synthase C compare
PP_4824 -2.0 -6.5 Sensor histidine kinase/response regulator compare
PP_2145 -1.9 -3.2 beta-N-acetylglucosaminidase compare
PP_4804 -1.9 -3.8 RlpA-like lipoprotein compare
PP_4977 -1.9 -8.4 5,10-methylenetetrahydrofolate reductase compare
PP_1304 -1.9 -7.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5313 -1.9 -2.0 DNA-binding protein HU-alpha compare
PP_4701 -1.8 -1.3 glucose-6-phosphate isomerase compare
PP_1826 -1.8 -2.3 Hydrolase, isochorismatase family compare
PP_1898 -1.8 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_5329 -1.8 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2349 -1.8 -4.3 nitrite transporter, HPP family (from data) compare
PP_1198 -1.8 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1303 -1.8 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_4782 -1.7 -2.6 Phosphomethylpyrimidine kinase compare
PP_3417 -1.7 -4.7 D-gluconate transporter compare
PP_1705 -1.7 -7.5 nitrite reductase [NAD(P)H] large subunit conserved
PP_5546 -1.7 -1.7 conserved protein of unknown function compare
PP_2375 -1.7 -8.7 cobalamin-dependent methionine synthase compare
PP_1233 -1.6 -3.3 sulfurtransferase compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1528 -1.6 -2.1 conserved protein of unknown function compare
PP_1677 -1.6 -4.2 Adenosyl-cobyric acid synthase compare
PP_4830 -1.6 -4.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_4124 -1.6 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_5311 -1.6 -6.1 putative signal transduction protein compare
PP_4480 -1.6 -6.4 arginine N-succinyltransferase, subunit alpha compare
PP_1676 -1.6 -4.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4121 -1.5 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_3508 -1.5 -4.5 Protein CobW compare
PP_3637 -1.5 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5230 -1.5 -3.2 Tyrosine recombinase XerC compare
PP_4826 -1.5 -4.6 Precorrin-3B C17-methyltransferase compare
PP_3580 -1.5 -1.7 conserved protein of unknown function compare
PP_0547 -1.5 -3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1994 -1.5 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_4131 -1.4 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_5104 -1.4 -5.3 thiazole synthase compare
PP_1217 -1.4 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4695 -1.4 -6.3 Sensory box histidine kinase compare
PP_1681 -1.4 -7.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0405 -1.3 -5.6 conserved protein of unknown function compare
PP_4098 -1.3 -1.7 UvrABC system protein C compare
PP_5203 -1.3 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_1673 -1.3 -3.8 cobyrinate a,c-diamide synthase compare
PP_0377 -1.3 -1.9 coenzyme PQQ synthesis protein D compare
PP_5310 -1.3 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_5661 -1.3 -4.3 putative lipoprotein compare
PP_1678 -1.3 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3507 -1.3 -7.5 Aerobic cobaltochelatase subunit CobN compare
PP_1656 -1.3 -4.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_2350 -1.3 -4.5 LysR family transcriptional regulator compare
PP_0833 -1.3 -1.4 queuine tRNA-ribosyltransferase compare
PP_5331 -1.3 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_4546 -1.3 -3.2 ATP-dependent helicase HrpA compare
PP_1011 -1.2 -5.6 glucokinase compare
PP_4143 -1.2 -2.9 conserved protein of unknown function compare
PP_4268 -1.2 -1.7 nucleoid-associated broad specificity regulator compare
PP_0789 -1.2 -3.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4058 -1.2 -5.2 1,4-alpha-glucan branching enzyme compare
PP_3938 -1.2 -1.7 conserved protein of unknown function compare
PP_5426 -1.2 -4.5 conserved protein of unknown function compare
PP_2088 -1.2 -1.9 RNA polymerase sigma factor SigX compare
PP_4582 -1.2 -3.7 conserved membrane protein of unknown function compare
PP_1675 -1.2 -4.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0262 -1.2 -3.1 conserved protein of unknown function compare
PP_4827 -1.2 -5.4 Precorrin-2 C(20)-methyltransferase compare
PP_1099 -1.1 -1.9 Cold shock protein CapB compare
PP_1679 -1.1 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0362 -1.1 -6.2 Biotin synthase compare
PP_4477 -1.1 -4.3 N-succinylarginine dihydrolase compare
PP_4479 -1.1 -3.5 arginine N-succinyltransferase, subunit beta compare
PP_4994 -1.1 -2.8 conserved protein of unknown function compare
PP_2794 -1.1 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4832 -1.1 -3.2 Precorrin-6x reductase compare
PP_0366 -1.1 -3.9 dethiobiotin synthetase compare
PP_4008 -1.1 -3.6 ATP-dependent serine protease compare
PP_0999 -1.1 -2.2 carbamate kinase compare
PP_2253 -1.1 -2.0 Transcriptional regulator, GntR family compare
PP_4340 -1.1 -2.4 response regulator for chemotactic signal transduction compare
PP_4338 -1.1 -4.2 Chemotaxis histidine kinase CheA compare
PP_3603 -1.1 -4.0 Transcriptional regulator, GntR family compare
PP_4895 -1.1 -1.9 tRNA dimethylallyltransferase compare
PP_3522 -1.0 -3.1 conserved protein of unknown function compare
PP_5639 -1.0 -4.7 conserved exported protein of unknown function compare
PP_4828 -1.0 -1.5 Precorrin-8X methylmutase compare
PP_2756 -1.0 -2.5 conserved protein of unknown function compare
PP_2217 -1.0 -1.8 enoyl-CoA hydratase compare
PP_4296 -1.0 -1.6 conserved exported protein of unknown function compare
PP_1444 -1.0 -6.7 quinoprotein glucose dehydrogenase compare
PP_4829 -1.0 -2.2 putative precorrin-3B synthase compare
PP_3346 -1.0 -2.1 Nickel transporter ATP-binding protein compare
PP_2140 -1.0 -2.9 conserved protein of unknown function compare
PP_2922 -1.0 -3.9 Urea amidolyase-related protein compare
PP_1733 -1.0 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_1736 -1.0 -2.5 conserved protein of unknown function compare
PP_1734 -1.0 -2.1 Probable septum site-determining protein MinC compare
PP_5146 -1.0 -4.4 RNA pyrophosphohydrolase compare
PP_0365 -1.0 -4.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5701 -1.0 -1.4 conserved protein of unknown function compare
PP_2225 -1.0 -4.1 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_0363 -1.0 -5.9 8-amino-7-oxononanoate synthase compare
PP_0685 -1.0 -1.8 conserved protein of unknown function compare
PP_2681 -1.0 -1.0 coenzyme PQQ synthesis protein D compare
PP_1009 -0.9 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1348 -0.9 -2.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1017 -0.9 -4.7 mannose/glucose ABC transporter, permease protein compare
PP_0138 -0.9 -5.1 conserved membrane protein of unknown function compare
PP_0434 -0.9 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_1041 -0.9 -1.9 twin arginine protein export complex subunit compare
PP_3477 -0.9 -3.5 Putative secretion type II protein related to protein G compare
PP_5339 -0.9 -2.8 transcriptional regulator, ornithine utilization compare
PP_4238 -0.9 -1.8 conserved protein of unknown function compare
PP_1553 -0.9 -1.1 conserved protein of unknown function compare
PP_0040 -0.9 -2.6 hypothetical protein compare
PP_1268 -0.9 -2.4 putative HtrA suppressor protein sohA compare
PP_1018 -0.9 -4.0 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5SB -0.9 -2.3 5S ribosomal RNA compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms