Experiment set22IT062 for Pseudomonas putida KT2440

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.7 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0293 -6.6 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -6.1 -7.2 Ornithine carbamoyltransferase compare
PP_2371 -5.9 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5098 -5.6 -10.1 methionine biosynthesis protein MetW compare
PP_0967 -5.6 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2327 -5.6 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5048 -5.4 -8.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5097 -5.2 -15.8 homoserine O-acetyltransferase compare
PP_0082 -5.1 -7.7 tryptophan synthase alpha chain compare
PP_0083 -5.1 -7.7 tryptophan synthase beta chain compare
PP_5015 -5.0 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1988 -5.0 -9.9 3-isopropylmalate dehydrogenase compare
PP_2168 -5.0 -13.6 Transaldolase compare
PP_5014 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -4.9 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2001 -4.8 -9.6 O-succinylhomoserine sulfhydrylase compare
PP_5303 -4.7 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5075 -4.6 -13.9 glutamate synthase (NADPH) beta subunit compare
PP_0289 -4.6 -6.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4678 -4.6 -16.4 Ketol-acid reductoisomerase compare
PP_0290 -4.6 -8.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -4.5 -13.9 Argininosuccinate synthase compare
PP_5289 -4.5 -6.1 Acetylglutamate kinase compare
PP_0184 -4.5 -9.1 Argininosuccinate lyase compare
PP_3999 -4.4 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -4.4 -6.0 Nitrogen regulation protein NR(I) compare
PP_3511 -4.3 -10.4 Branched-chain-amino-acid aminotransferase compare
PP_0965 -4.3 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4680 -4.3 -15.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.3 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5076 -4.2 -18.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_0422 -4.2 -7.9 Indole-3-glycerol phosphate synthase compare
PP_4804 -4.1 -2.9 RlpA-like lipoprotein compare
PP_1231 -4.1 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0420 -4.1 -10.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0966 -4.1 -9.3 Histidinol dehydrogenase compare
PP_0417 -4.1 -15.0 Anthranilate synthase component 1 compare
PP_1589 -4.0 -11.7 uridylyltransferase compare
PP_1985 -3.9 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_4909 -3.8 -8.1 phosphoserine phosphatase compare
PP_1733 -3.8 -5.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_5347 -3.8 -13.6 pyruvate carboxylase subunit A compare
PP_4679 -3.7 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.6 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0735 -3.6 -2.7 molybdopterin-synthase adenylyltransferase compare
PP_0421 -3.6 -8.6 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.5 -6.8 Dihydroxy-acid dehydratase compare
PP_1233 -3.5 -6.3 sulfurtransferase compare
PP_1022 -3.5 -6.2 glucose 6-phosphate-1-dehydrogenase compare
PP_4902 -3.4 -3.9 Oligoribonuclease compare
PP_1362 -3.3 -5.5 pyruvate kinase II compare
PP_1986 -3.3 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_2328 -3.3 -8.0 Phosphoadenosine phosphosulfate reductase compare
PP_4785 -3.2 -5.6 conserved exported protein of unknown function compare
PP_5185 -3.1 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1025 -3.1 -10.0 2-isopropylmalate synthase compare
PP_4874 -3.1 -2.1 50S ribosomal protein L9 compare
PP_2370 -3.1 -5.0 conserved protein of unknown function compare
PP_5155 -3.0 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1706 -2.9 -4.0 Nitrite reductase compare
PP_2093 -2.9 -7.8 NasT conserved
PP_1426 -2.9 -12.5 L-aspartate oxidase compare
PP_1705 -2.8 -9.3 nitrite reductase [NAD(P)H] large subunit conserved
PP_2402 -2.8 -3.2 putative Sensor histidine kinase compare
PP_5348 -2.7 -9.7 Transcriptional regulator, LysR family compare
PP_1654 -2.6 -3.5 cysteine synthase B compare
PP_2378 -2.6 -4.0 Fe/S biogenesis protein NfuA compare
PP_5217 -2.6 -9.9 Polyphosphate kinase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_4782 -2.5 -3.6 Phosphomethylpyrimidine kinase compare
PP_4271 -2.4 -1.6 conserved protein of unknown function compare
PP_0291 -2.4 -2.5 conserved protein of unknown function compare
PP_5047 -2.4 -4.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5346 -2.4 -7.2 pyruvate carboxylase subunit B compare
PP_4124 -2.3 -5.1 NADH-quinone oxidoreductase subunit G compare
PP_1672 -2.3 -4.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4004 -2.1 -4.4 DNA translocase FtsK compare
PP_2302 -2.1 -5.3 DNA-binding, ATP-dependent protease compare
PP_5310 -2.1 -6.1 junction-specific ATP-dependent DNA helicase compare
PP_5350 -2.1 -4.5 Transcriptional regulator, RpiR family compare
PP_1303 -2.0 -5.7 Sulfate adenylyltransferase subunit 2 compare
PP_2349 -2.0 -7.3 nitrite transporter, HPP family (from data) compare
PP_0377 -2.0 -2.7 coenzyme PQQ synthesis protein D compare
PP_3417 -1.9 -4.3 D-gluconate transporter compare
PP_4098 -1.9 -2.8 UvrABC system protein C compare
PP_4058 -1.9 -7.9 1,4-alpha-glucan branching enzyme compare
PP_0406 -1.9 -3.9 Nucleotidyltransferase family protein compare
PP_5104 -1.8 -6.1 thiazole synthase compare
PP_1679 -1.8 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1898 -1.8 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_0065 -1.7 -3.4 NAD-binding component of TrK potassium transporter compare
PP_4977 -1.7 -8.8 5,10-methylenetetrahydrofolate reductase compare
PP_0789 -1.7 -5.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4699 -1.7 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4829 -1.7 -3.6 putative precorrin-3B synthase compare
PP_4994 -1.7 -5.7 conserved protein of unknown function compare
PP_1216 -1.7 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2375 -1.7 -9.7 cobalamin-dependent methionine synthase compare
PP_0719 -1.7 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4695 -1.6 -7.4 Sensory box histidine kinase compare
PP_4480 -1.6 -6.3 arginine N-succinyltransferase, subunit alpha compare
PP_1673 -1.6 -4.9 cobyrinate a,c-diamide synthase compare
PP_5095 -1.6 -1.5 pyrroline-5-carboxylate reductase compare
PP_1304 -1.5 -7.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1783 -1.5 -1.9 dTDP-glucose pyrophosphorylase compare
PP_3506 -1.5 -3.5 Magnesium chelatase, subunit ChII compare
PP_1664 -1.5 -2.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5453 -1.5 -2.0 conserved protein of unknown function compare
PP_1011 -1.4 -6.2 glucokinase compare
PP_2345 -1.4 -4.1 conserved exported protein of unknown function compare
PP_1355 -1.4 -6.9 Muropeptide permease AmpG compare
PP_1675 -1.4 -5.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4830 -1.4 -4.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_3946 -1.4 -1.5 HTH-type transcriptional repressor NicR compare
PP_4787 -1.4 -2.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5331 -1.3 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4136 -1.3 -1.2 Transcriptional regulator, LuxR family compare
PP_1428 -1.3 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1681 -1.3 -6.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4693 -1.3 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_1860 -1.3 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_0434 -1.3 -3.1 Anhydro-N-acetylmuramic acid kinase compare
PP_3507 -1.3 -7.8 Aerobic cobaltochelatase subunit CobN compare
PP_4121 -1.3 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1018 -1.3 -4.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_4824 -1.3 -4.8 Sensor histidine kinase/response regulator compare
PP_5311 -1.2 -5.6 putative signal transduction protein compare
PP_2094 -1.2 -4.0 putative Nitrate-binding protein NasS conserved
PP_4964 -1.2 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1015 -1.2 -4.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_4122 -1.2 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1676 -1.2 -3.5 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2107 -1.2 -1.6 conserved protein of unknown function compare
PP_2226 -1.2 -3.7 putative K(+)/H(+) antiporter subunit F compare
PP_0364 -1.2 -5.3 pimeloyl-[acp] methyl ester esterase compare
PP_2403 -1.2 -1.8 Chemotaxis protein CheY compare
PP_4131 -1.2 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_1217 -1.2 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3346 -1.2 -2.3 Nickel transporter ATP-binding protein compare
PP_0363 -1.2 -5.7 8-amino-7-oxononanoate synthase compare
PP_4109 -1.2 -2.4 conserved protein of unknown function compare
PP_4340 -1.2 -2.6 response regulator for chemotactic signal transduction compare
PP_1348 -1.1 -3.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4826 -1.1 -3.8 Precorrin-3B C17-methyltransferase compare
PP_1017 -1.1 -4.4 mannose/glucose ABC transporter, permease protein compare
PP_0022 -1.1 -1.2 hypothetical protein compare
PP_0405 -1.1 -5.3 conserved protein of unknown function compare
PP_3603 -1.1 -4.1 Transcriptional regulator, GntR family compare
PP_4126 -1.1 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_5274 -1.1 -2.1 conserved protein of unknown function compare
PP_1829 -1.1 -2.1 Hydrolase, alpha/beta fold family compare
PP_0643 -1.1 -1.6 protein of unknown function compare
PP_1826 -1.1 -1.6 Hydrolase, isochorismatase family compare
PP_3508 -1.1 -1.9 Protein CobW compare
PP_4922 -1.1 -6.0 Phosphomethylpyrimidine synthase compare
PP_5328 -1.1 -1.8 putative phosphate transport system permease protein compare
PP_2388 -1.1 -3.2 Transporter, LysE family compare
PP_4338 -1.1 -4.5 Chemotaxis histidine kinase CheA compare
PP_0425 -1.1 -2.6 conserved protein of unknown function compare
PP_1020 -1.0 -1.3 putative glucose-6-phosphate 1-epimerase compare
PP_4477 -1.0 -4.7 N-succinylarginine dihydrolase compare
PP_5203 -1.0 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_4984 -1.0 -5.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1697 -1.0 -1.7 transcriptional regulator, GntR family compare
PP_0547 -1.0 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5227 -1.0 -4.5 diaminopimelate decarboxylase compare
PP_1656 -1.0 -3.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0365 -1.0 -5.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1716 -1.0 -1.6 Transcriptional regulator, Cro/CI family compare
PP_4593 -0.9 -0.9 conserved protein of unknown function compare
PP_5639 -0.9 -5.2 conserved exported protein of unknown function compare
PP_0362 -0.9 -5.2 Biotin synthase compare
PP_4827 -0.9 -5.4 Precorrin-2 C(20)-methyltransferase compare
PP_5507 -0.9 -2.4 protein of unknown function compare
PP_0393 -0.9 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5035 -0.9 -4.1 Histidine utilization repressor compare
PP_0366 -0.9 -2.3 dethiobiotin synthetase compare
PP_1678 -0.9 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0685 -0.9 -0.9 conserved protein of unknown function compare
PP_2550 -0.9 -2.7 putative transcriptional regulatory protein compare
PP_0138 -0.9 -5.4 conserved membrane protein of unknown function compare
PP_0855 -0.9 -1.5 conserved protein of unknown function compare
PP_3378 -0.9 -2.0 putative 2-ketogluconokinase compare
PP_4504 -0.9 -1.3 conserved exported protein of unknown function compare
PP_1444 -0.9 -5.1 quinoprotein glucose dehydrogenase compare
PP_2530 -0.9 -2.0 conserved protein of unknown function compare
PP_1677 -0.9 -2.8 Adenosyl-cobyric acid synthase compare
PP_1734 -0.9 -2.2 Probable septum site-determining protein MinC compare
PP_5058 -0.9 -2.8 Carboxy-terminal-processing protease compare
PP_2145 -0.9 -1.4 beta-N-acetylglucosaminidase compare
PP_2568 -0.9 -1.1 Ring-cleaving dioxygenase compare
PP_1906 -0.9 -1.5 ribosomal large subunit pseudouridine synthase C compare
PP_5236 -0.9 -4.5 conserved protein of unknown function compare
PP_0852 -0.9 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4832 -0.9 -2.3 Precorrin-6x reductase compare
PP_1012 -0.9 -3.3 DNA-binding response regulator compare
PP_2622 -0.9 -1.8 conserved protein of unknown function compare
PP_4045 -0.8 -2.5 conserved protein of unknown function compare
PP_1016 -0.8 -4.1 mannose/glucose ABC transporter, permease protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms