Experiment set22IT061 for Pseudomonas putida KT2440

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0967 -5.6 -7.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -5.3 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2001 -5.3 -7.3 O-succinylhomoserine sulfhydrylase compare
PP_1231 -5.1 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -5.0 -6.0 methionine biosynthesis protein MetW compare
PP_5097 -5.0 -10.2 homoserine O-acetyltransferase compare
PP_4680 -5.0 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5303 -5.0 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4890 -4.9 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2168 -4.9 -8.2 Transaldolase compare
PP_1986 -4.9 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.9 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5048 -4.7 -6.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2370 -4.7 -3.2 conserved protein of unknown function compare
PP_5047 -4.6 -7.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3505 -4.6 -3.1 conserved protein of unknown function compare
PP_0420 -4.5 -10.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -4.5 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_1985 -4.5 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_1995 -4.4 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -4.4 -4.3 tryptophan synthase alpha chain compare
PP_5015 -4.4 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -4.4 -3.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -4.4 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4678 -4.3 -12.5 Ketol-acid reductoisomerase compare
PP_5076 -4.3 -16.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0566 -4.3 -1.9 translation-related factor compare
PP_0083 -4.3 -4.2 tryptophan synthase beta chain compare
PP_1079 -4.3 -5.8 Ornithine carbamoyltransferase compare
PP_5075 -4.3 -11.5 glutamate synthase (NADPH) beta subunit compare
PP_0966 -4.3 -9.6 Histidinol dehydrogenase compare
PP_0417 -4.2 -15.6 Anthranilate synthase component 1 compare
PP_1589 -4.1 -6.3 uridylyltransferase compare
PP_2371 -4.1 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0184 -4.0 -5.5 Argininosuccinate lyase compare
PP_0276 -4.0 -1.8 Transcriptional regulator, Cro/CI family compare
PP_1988 -4.0 -7.8 3-isopropylmalate dehydrogenase compare
PP_1692 -3.9 -3.8 conserved protein of unknown function compare
PP_0290 -3.9 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0292 -3.9 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4785 -3.8 -6.4 conserved exported protein of unknown function compare
PP_1426 -3.8 -11.9 L-aspartate oxidase compare
PP_4909 -3.8 -3.7 phosphoserine phosphatase compare
PP_1088 -3.8 -9.1 Argininosuccinate synthase compare
PP_5185 -3.8 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1679 -3.7 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5128 -3.7 -7.2 Dihydroxy-acid dehydratase compare
PP_5155 -3.6 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1025 -3.6 -11.2 2-isopropylmalate synthase compare
PP_1706 -3.6 -4.8 Nitrite reductase compare
PP_1362 -3.5 -2.4 pyruvate kinase II compare
PP_5289 -3.5 -4.2 Acetylglutamate kinase compare
PP_1096 -3.5 -2.5 putative electron transport complex protein compare
PP_0422 -3.5 -4.2 Indole-3-glycerol phosphate synthase compare
PP_0421 -3.4 -6.4 Anthranilate phosphoribosyltransferase compare
PP_3946 -3.4 -2.1 HTH-type transcriptional repressor NicR compare
PP_1733 -3.4 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_2737 -3.3 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2328 -3.3 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_1705 -3.3 -9.3 nitrite reductase [NAD(P)H] large subunit conserved
PP_4696 -3.2 -3.8 Nitrogen regulation protein NR(I) compare
PP_0001 -3.2 -2.2 probable chromosome-partitioning protein compare
PP_3999 -3.2 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5014 -3.1 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0787 -3.1 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4804 -3.0 -2.1 RlpA-like lipoprotein compare
PP_2093 -3.0 -7.5 NasT conserved
PP_4679 -2.9 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0960 -2.9 -5.2 phospholipid ABC transporter binding protein compare
PP_5348 -2.9 -6.4 Transcriptional regulator, LysR family compare
PP_5347 -2.9 -8.4 pyruvate carboxylase subunit A compare
PP_1303 -2.8 -5.8 Sulfate adenylyltransferase subunit 2 compare
PP_1672 -2.8 -5.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5217 -2.8 -9.7 Polyphosphate kinase compare
PP_4480 -2.7 -7.3 arginine N-succinyltransferase, subunit alpha compare
PP_4977 -2.7 -9.2 5,10-methylenetetrahydrofolate reductase compare
PP_4058 -2.7 -8.0 1,4-alpha-glucan branching enzyme compare
PP_1217 -2.7 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1233 -2.7 -4.0 sulfurtransferase compare
PP_1553 -2.7 -2.9 conserved protein of unknown function compare
PP_5346 -2.6 -5.9 pyruvate carboxylase subunit B compare
PP_5350 -2.5 -3.0 Transcriptional regulator, RpiR family compare
PP_5331 -2.5 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_0735 -2.5 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1994 -2.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1011 -2.4 -6.5 glucokinase compare
PP_2402 -2.4 -2.3 putative Sensor histidine kinase compare
PP_1022 -2.4 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4824 -2.3 -5.2 Sensor histidine kinase/response regulator compare
PP_0775 -2.3 -2.7 conserved protein of unknown function compare
PP_2820 -2.3 -3.6 HTH-type transcriptional regulator nfxB compare
PP_5104 -2.3 -5.8 thiazole synthase compare
PP_2403 -2.3 -1.8 Chemotaxis protein CheY compare
PP_1654 -2.2 -3.0 cysteine synthase B compare
PP_1054 -2.2 -2.4 Type II secretion pathway protein XcpZ compare
PP_2088 -2.2 -2.6 RNA polymerase sigma factor SigX compare
PP_1269 -2.2 -1.4 Universal stress protein family compare
PP_1824 -2.2 -1.9 Smr domain protein compare
PP_1677 -2.2 -4.2 Adenosyl-cobyric acid synthase compare
PP_4642 -2.2 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_0846 -2.1 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_4131 -2.1 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_4199 -2.1 -1.3 putative Lipoprotein compare
PP_4124 -2.1 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_1512 -2.1 -3.2 conserved protein of unknown function compare
PP_2340 -2.1 -3.9 conserved protein of unknown function compare
PP_4129 -2.0 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4874 -2.0 -1.4 50S ribosomal protein L9 compare
PP_1099 -2.0 -2.1 Cold shock protein CapB compare
PP_4004 -2.0 -3.3 DNA translocase FtsK compare
PP_4792 -2.0 -1.5 conserved exported protein of unknown function compare
PP_0291 -1.9 -2.3 conserved protein of unknown function compare
PP_1562 -1.9 -1.4 putative Phage terminase, small subunit compare
PP_4782 -1.9 -2.4 Phosphomethylpyrimidine kinase compare
PP_4828 -1.9 -1.6 Precorrin-8X methylmutase compare
PP_1304 -1.9 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5221 -1.9 -3.4 conserved protein of unknown function, UPF0178 family compare
PP_5393 -1.9 -1.6 putative metal-binding chaperone compare
PP_t12 -1.9 -1.2 tRNA-Thr compare
PP_1348 -1.9 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2375 -1.8 -8.3 cobalamin-dependent methionine synthase compare
PP_1675 -1.8 -5.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1681 -1.8 -6.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1676 -1.8 -3.3 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4693 -1.8 -1.7 RNA polymerase-binding transcription factor DksA compare
PP_4591 -1.8 -3.1 Ribonuclease D compare
PP_1215 -1.8 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_1208 -1.8 -1.7 conserved protein of unknown function, SlyX family compare
PP_1678 -1.7 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5667 -1.7 -2.5 putative microcin B17-like-processing protein, McbC family compare
PP_1468 -1.7 -1.6 Tyrosine recombinase XerD compare
PP_3105 -1.7 -2.1 conserved membrane protein of unknown function compare
PP_1826 -1.7 -2.0 Hydrolase, isochorismatase family compare
PP_2302 -1.7 -3.7 DNA-binding, ATP-dependent protease compare
PP_3417 -1.7 -3.5 D-gluconate transporter compare
PP_3971 -1.7 -1.5 conserved protein of unknown function compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3460 -1.6 -1.6 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1673 -1.6 -4.0 cobyrinate a,c-diamide synthase compare
PP_5311 -1.6 -4.3 putative signal transduction protein compare
PP_4121 -1.6 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0364 -1.6 -4.0 pimeloyl-[acp] methyl ester esterase compare
PP_4699 -1.6 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4700 -1.6 -1.1 pantothenate synthetase compare
PP_0406 -1.6 -2.4 Nucleotidyltransferase family protein compare
PP_4120 -1.6 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_5496 -1.6 -2.5 conserved exported protein of unknown function compare
PP_5027 -1.6 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5505 -1.6 -2.3 conserved transmembrane protein of unknown function compare
PP_5SB -1.6 -3.1 5S ribosomal RNA compare
PP_2203 -1.6 -1.4 conserved protein of unknown function compare
PP_4830 -1.5 -3.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_4726 -1.5 -1.9 Chaperone protein DnaJ compare
PP_4695 -1.5 -6.4 Sensory box histidine kinase compare
PP_5639 -1.5 -5.5 conserved exported protein of unknown function compare
PP_5203 -1.5 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_1001 -1.5 -1.8 arginine deiminase compare
PP_4891 -1.5 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3738 -1.5 -2.1 putative Transcriptional regulator VanR compare
PP_2094 -1.5 -3.2 putative Nitrate-binding protein NasS conserved
PP_0962 -1.5 -1.9 toluene-tolerance protein compare
PP_5095 -1.5 -1.0 pyrroline-5-carboxylate reductase compare
PP_4340 -1.5 -2.4 response regulator for chemotactic signal transduction compare
PP_4826 -1.5 -3.3 Precorrin-3B C17-methyltransferase compare
PP_1860 -1.4 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_5500 -1.4 -1.8 protein of unknown function compare
PP_0547 -1.4 -3.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1571 -1.4 -1.9 conserved protein of unknown function compare
PP_0362 -1.4 -6.7 Biotin synthase compare
PP_0246 -1.4 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_1734 -1.4 -2.9 Probable septum site-determining protein MinC compare
PP_5227 -1.4 -5.8 diaminopimelate decarboxylase compare
PP_3227 -1.4 -2.1 Transcriptional regulator, LysR family compare
PP_4387 -1.4 -2.0 conserved exported protein of unknown function compare
PP_0152 -1.4 -1.6 conserved exported protein of unknown function compare
PP_5310 -1.3 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_1013 -1.3 -4.0 Sensor histidine kinase compare
PP_3555 -1.3 -4.3 putative Transmembrane sensor compare
PP_3312 -1.3 -0.9 putative Heat shock protein compare
PP_3507 -1.3 -5.9 Aerobic cobaltochelatase subunit CobN compare
PP_2081 -1.3 -4.0 putative phosphoenolpyruvate synthase regulatory protein compare
PP_0151 -1.3 -2.4 conserved exported protein of unknown function compare
PP_0363 -1.3 -5.1 8-amino-7-oxononanoate synthase compare
PP_5327 -1.3 -2.6 putative phosphate ABC transporter, permease subunit compare
PP_2107 -1.3 -1.4 conserved protein of unknown function compare
PP_2441 -1.3 -2.4 conserved protein of unknown function compare
PP_3035 -1.3 -1.3 conserved protein of unknown function compare
PP_1906 -1.3 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_5748 -1.3 -1.1 cytochrome c heme lyase subunit compare
PP_0376 -1.3 -4.5 Coenzyme PQQ synthesis protein E compare
PP_3509 -1.3 -1.6 Glyoxalase family protein compare
PP_4964 -1.2 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0405 -1.2 -5.2 conserved protein of unknown function compare
PP_2145 -1.2 -1.7 beta-N-acetylglucosaminidase compare
PP_1015 -1.2 -4.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5610 -1.2 -1.7 protein of unknown function compare
PP_2532 -1.2 -3.5 conserved protein of unknown function compare
PP_3563 -1.2 -2.3 conserved exported protein of unknown function compare
PP_2378 -1.2 -1.8 Fe/S biogenesis protein NfuA compare
PP_3508 -1.2 -1.7 Protein CobW compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms