Experiment set22IT061 for Escherichia coli BW25113

Compare to:

T7_phage 0.0015625 MOI TC2

Group: phage
Media: LB_plus_SM_buffer + T7_phage (0.0015625 MOI)
Culturing: Keio_ML9a, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Crystal on 21-Aug-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 27 genes in this experiment

For phage T7_phage in Escherichia coli BW25113

For phage T7_phage across organisms

SEED Subsystems

Subsystem #Specific
DNA repair, bacterial RecFOR pathway 4
DNA-replication 3
DNA repair, bacterial 3
DNA Repair Base Excision 2
Rhamnose containing glycans 2
dTDP-rhamnose synthesis 2
linker unit-arabinogalactan synthesis 2
Capsular heptose biosynthesis 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
LOS core oligosaccharide biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
dTDP-β-L-rhamnose biosynthesis 5 5 2
cardiolipin biosynthesis II 3 3 1
cardiolipin biosynthesis III 3 3 1
cardiolipin biosynthesis I 3 3 1
heme b biosynthesis I (aerobic) 4 4 1
heme b biosynthesis V (aerobic) 4 4 1
heme b biosynthesis II (oxygen-independent) 4 4 1
dTDP-4-O-demethyl-β-L-noviose biosynthesis 5 3 1
O-antigen building blocks biosynthesis (E. coli) 11 11 2
superpathway of heme b biosynthesis from uroporphyrinogen-III 6 6 1
phosphatidylglycerol biosynthesis I 6 6 1
phosphatidylglycerol biosynthesis II 6 6 1
dTDP-sibirosamine biosynthesis 6 3 1
dTDP-L-daunosamine biosynthesis 6 3 1
superpathway of heme b biosynthesis from glycine 8 7 1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis 19 7 2
superpathway of heme b biosynthesis from glutamate 10 10 1
lipid A-core biosynthesis (E. coli K-12) 10 9 1
lipid A-core biosynthesis (Salmonella) 10 8 1
peptidoglycan recycling II 10 7 1
superpathway of phospholipid biosynthesis III (E. coli) 12 12 1
superpathway of cardiolipin biosynthesis (bacteria) 13 11 1
peptidoglycan recycling I 14 14 1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis 33 14 2
type I lipoteichoic acid biosynthesis (S. aureus) 17 5 1
superpathway of novobiocin biosynthesis 19 4 1
superpathway of Kdo2-lipid A biosynthesis 25 24 1
superpathway of phospholipid biosynthesis II (plants) 28 10 1