| | gene | name | fitness | t score | description | |
|---|
| b1936 | intG | +1.5 | 2.3 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0564 | appY | +1.4 | 2.1 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b4458 | oxyS | +1.3 | 3.3 | global regulatory RNA (NCBI) | compare |
| b1476 | fdnI | +1.2 | 1.5 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4699 | fnrS | +1.1 | 1.3 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1550 | b1550 | +1.1 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4701 | sokX | +1.1 | 0.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1942 | fliJ | +1.0 | 2.1 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1765 | ydjA | +1.0 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b1647 | ydhF | +0.9 | 4.1 | predicted oxidoreductase (NCBI) | compare |
| b1161 | ycgX | +0.9 | 1.3 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | +0.9 | 0.9 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1642 | slyA | +0.8 | 1.6 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3341 | rpsG | +0.8 | 1.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b1261 | trpB | +0.8 | 2.2 | tryptophan synthase subunit beta (NCBI) | compare |
| b1335 | ogt | +0.8 | 2.3 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b3890 | yiiF | +0.8 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4408 | csrB | +0.8 | 3.5 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1739 | osmE | +0.7 | 1.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b4418 | sraB | +0.7 | 1.0 | unknown RNA (NCBI) | compare |
| b4595 | yciY | +0.7 | 1.2 | hypothetical protein (RefSeq) | compare |
| b2450 | yffS | +0.7 | 2.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1818 | manY | +0.7 | 1.4 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0974 | hyaC | +0.7 | 2.5 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b1984 | asnW | +0.7 | 1.0 | tRNA-Asn (NCBI) | compare |
| b1566 | flxA | +0.7 | 1.6 | Qin prophage; predicted protein (NCBI) | compare |
| b4533 | ynfO | +0.7 | 1.2 | Qin prophage; predicted protein (NCBI) | compare |
| b1220 | ychO | +0.7 | 2.5 | predicted invasin (RefSeq) | compare |
| b1507 | hipA | +0.6 | 2.4 | regulator with hipB (NCBI) | compare |
| b1874 | cutC | +0.6 | 1.3 | copper homeostasis protein (NCBI) | compare |
| b1853 | yebK | +0.6 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1824 | yobF | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b4630 | ykgP | +0.6 | 2.3 | no description | compare |
| b1171 | b1171 | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1758 | b1758 | +0.6 | 1.0 | putative cytochrome oxidase (VIMSS) | compare |
| b1482 | osmC | +0.6 | 0.7 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b1448 | yncA | +0.6 | 1.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1270 | btuR | +0.6 | 1.6 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b3107 | yhaL | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4702 | mgtL | +0.6 | 1.3 | regulatory leader peptide for mgtA (NCBI) | compare |
| b0263 | afuB | +0.6 | 1.2 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b1120 | cobB | +0.6 | 2.8 | deacetylase of acs and cheY, regulates chemotaxis (NCBI) | compare |
| b1567 | intK | +0.6 | 1.8 | Qin prophage; predicted protein (RefSeq) | compare |
| b1217 | chaB | +0.6 | 1.0 | cation transport regulator (NCBI) | compare |
| b2058 | wcaB | +0.6 | 1.0 | predicted acyl transferase (NCBI) | compare |
| b1742 | b1742 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1343 | dbpA | +0.5 | 2.2 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b2197 | ccmE | +0.5 | 2.8 | periplasmic heme chaperone (NCBI) | compare |
| b2782 | chpA | +0.5 | 2.1 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b1608 | rstA | +0.5 | 2.0 | DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) | compare |
| b0878 | b0878 | +0.5 | 2.2 | putative membrane protein (VIMSS) | compare |
| b1731 | cedA | +0.5 | 1.4 | cell division modulator (RefSeq) | compare |
| b2448 | yffQ | +0.5 | 2.5 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b0730 | mngR | +0.5 | 1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b2005 | yeeV | +0.5 | 2.5 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b4436 | ryeC | +0.5 | 1.0 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1904 | yecR | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b1070 | flgN | +0.5 | 1.0 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b1753 | ynjA | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1412 | azoR | +0.5 | 1.7 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b0817 | mntR | +0.5 | 2.2 | DNA-binding transcriptional regulator of mntH (NCBI) | compare |
| b2012 | yeeD | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1557 | cspB | +0.5 | 1.0 | Qin prophage; cold shock protein (NCBI) | compare |
| b1429 | tehA | +0.5 | 0.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b2061 | wzb | +0.5 | 1.4 | protein-tyrosine phosphatase (NCBI) | compare |
| b4695 | ykgT | +0.5 | 1.3 | no description | compare |
| b1583 | ynfB | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b2410 | yfeH | +0.5 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1192 | ldcA | +0.5 | 2.2 | L,D-carboxypeptidase A (NCBI) | compare |
| b3882 | yihU | +0.5 | 2.7 | predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b4416 | rybA | +0.5 | 0.8 | unknown RNA (NCBI) | compare |
| b1366 | ydaY | +0.5 | 2.2 | Rac prophage; predicted protein (RefSeq) | compare |
| b4294 | insA-7 | +0.5 | 1.3 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2096 | gatY | +0.5 | 2.6 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b0975 | hyaD | +0.5 | 2.6 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b1479 | sfcA | +0.5 | 2.0 | NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) | compare |
| b4613 | dinQ | +0.5 | 1.2 | Damage inducible, function unknown (RefSeq) | compare |
| b2050 | wcaI | +0.5 | 2.4 | predicted glycosyl transferase (NCBI) | compare |
| b0367 | tauC | +0.5 | 2.2 | taurine transporter subunit (NCBI) | compare |
| b1021 | ycdP | +0.5 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b0617 | citD | +0.5 | 1.4 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b4646 | yrdE | +0.5 | 1.6 | no description | compare |
| b1830 | prc | +0.5 | 2.4 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1323 | tyrR | +0.5 | 2.5 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b1757 | b1757 | +0.5 | 2.1 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b1542 | ydfI | +0.5 | 1.6 | predicted mannonate dehydrogenase (NCBI) | compare |
| b4176 | yjeT | +0.5 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b4535 | yniD | +0.5 | 0.8 | predicted protein (RefSeq) | compare |
| b1944 | fliL | +0.4 | 1.7 | flagellar basal body-associated protein FliL (NCBI) | compare |
| b1591 | b1591 | +0.4 | 1.2 | putative oxidoreductase component (VIMSS) | compare |
| b1724 | ydiZ | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1620 | malI | +0.4 | 1.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1421 | trg | +0.4 | 1.7 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1595 | ynfL | +0.4 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2080 | b2080 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4457 | csrC | +0.4 | 1.2 | regulatory RNA (NCBI) | compare |
| b0556 | rzpD | +0.4 | 1.1 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b4622 | ytcA | +0.4 | 2.1 | hypothetical protein (RefSeq) | compare |
| b1918 | yecS | +0.4 | 1.5 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0843 | ybjH | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2990 | hybG | +0.4 | 1.2 | hydrogenase 2 accessory protein (NCBI) | compare |
| b1415 | aldA | +0.4 | 1.8 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1349 | recT | +0.4 | 2.2 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b0404 | yajB | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4578 | insP | +0.4 | 1.2 | no description | compare |
| b0210 | yafE | +0.4 | 1.6 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b4614 | sokA | +0.4 | 1.7 | no description | compare |
| b1651 | gloA | +0.4 | 1.5 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b1581 | rspA | +0.4 | 1.7 | predicted dehydratase (NCBI) | compare |
| b0953 | rmf | +0.4 | 1.0 | ribosome modulation factor (NCBI) | compare |
| b1259 | yciG | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1160 | elbA | +0.4 | 0.5 | hypothetical protein (NCBI) | compare |
| b2561 | yfhH | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3014 | yqhH | +0.4 | 1.3 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0987 | ymcD | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2455 | eutE | +0.4 | 1.4 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b1741 | ydjQ | +0.4 | 1.9 | endonuclease of nucleotide excision repair (NCBI) | compare |
| b1382 | ynbE | +0.4 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b1871 | yecP | +0.4 | 1.6 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3120 | yhaB | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2635 | ypjK | +0.4 | 1.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4057 | yjbR | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1519 | tam | +0.4 | 2.0 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b4505 | insX | +0.4 | 0.9 | predicted IS protein (RefSeq) | compare |
| b0994 | torT | +0.4 | 1.4 | periplasmic sensory protein associated with the TorRS two-component regulatory system (NCBI) | compare |
| b4438 | cyaR | +0.4 | 0.9 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b2381 | ypdB | +0.4 | 1.9 | predicted response regulator in two-component system withYpdA (NCBI) | compare |
| b1602 | pntB | +0.4 | 1.4 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2291 | yfbR | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1045 | ymdB | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1756 | ynjD | +0.4 | 1.5 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1067 | yceH | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b3206 | npr | +0.4 | 1.6 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1494 | pqqL | +0.4 | 2.4 | predicted peptidase (NCBI) | compare |
| b3005 | exbD | +0.4 | 2.0 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1222 | narX | +0.4 | 1.9 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3098 | yqjD | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1296 | ycjJ | +0.4 | 1.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1046 | ymdC | +0.4 | 2.2 | putative synthase (VIMSS) | compare |
| b2438 | b2438 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1399 | paaX | +0.4 | 1.3 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b1484 | ddpD | +0.4 | 1.8 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b3382 | yhfY | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1971 | yedY | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1861 | ruvA | +0.4 | 0.6 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0380 | b0380 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2033 | wbbJ | +0.4 | 1.9 | predicted acyl transferase (NCBI) | compare |
| b4506 | ykgO | +0.4 | 1.5 | rpmJ (L36) paralog (NCBI) | compare |
| b0685 | ybfE | +0.4 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0784 | moaD | +0.4 | 0.9 | molybdopterin synthase, small subunit (NCBI) | compare |
| b2378 | ddg | +0.4 | 1.6 | putative heat shock protein (VIMSS) | compare |
| b1013 | ycdC | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2114 | metG | +0.4 | 0.7 | methionyl-tRNA synthetase (NCBI) | compare |
| b1623 | add | +0.4 | 1.1 | adenosine deaminase (NCBI) | compare |
| b4585 | sroB | +0.4 | 0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b4493 | gapC | +0.4 | 0.7 | no description | compare |
| b0717 | ybgP | +0.4 | 1.4 | predicted assembly protein (NCBI) | compare |
| b1696 | ydiP | +0.4 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1063 | yceB | +0.4 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b1162 | ycgE | +0.4 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2726 | hypA | +0.4 | 1.8 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b0682 | ybfN | +0.3 | 1.0 | predicted lipoprotein (NCBI) | compare |
| b2492 | focB | +0.3 | 2.2 | predicted formate transporter (NCBI) | compare |
| b1478 | adhP | +0.3 | 1.6 | alcohol dehydrogenase (VIMSS) | compare |
| b1679 | sufE | +0.3 | 1.2 | cysteine desufuration protein SufE (NCBI) | compare |
| b2732 | ygbA | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | +0.3 | 0.5 | conserved inner membrane protein (NCBI) | compare |
| b4207 | fklB | +0.3 | 2.2 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) | compare |
| b4490 | efeU | +0.3 | 2.4 | no description | compare |
| b1961 | dcm | +0.3 | 0.6 | DNA cytosine methylase (NCBI) | compare |
| b3594 | yibA | +0.3 | 2.0 | lyase containing HEAT-repeat (NCBI) | compare |
| b0872 | hcr | +0.3 | 1.9 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b4224 | chpS | +0.3 | 2.0 | suppressor of inhibitory function of ChpB, PemI-like, autoregulated (VIMSS) | compare |
| b0596 | entA | +0.3 | 1.9 | 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI) | compare |
| b0088 | murD | +0.3 | 0.6 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b0991 | ymcE | +0.3 | 1.1 | cold shock gene (NCBI) | compare |
| b1513 | lsrA | +0.3 | 1.7 | fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1348 | lar | +0.3 | 0.6 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2911 | ssrS | +0.3 | 0.4 | 6S regulatory RNA (NCBI) | compare |
| b1431 | ydcL | +0.3 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b1248 | b1248 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1617 | uidA | +0.3 | 2.0 | beta-D-glucuronidase (NCBI) | compare |
| b1803 | yeaX | +0.3 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b4406 | yaeP | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b0840 | deoR | +0.3 | 1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4502 | yeiW | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b0447 | ybaO | +0.3 | 1.2 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b0927 | ycbL | +0.3 | 1.3 | predicted metal-binding enzyme (NCBI) | compare |
| b1197 | treA | +0.3 | 2.0 | periplasmic trehalase (NCBI) | compare |
| b0261 | mmuM | +0.3 | 2.1 | homocysteine methyltransferase (NCBI) | compare |
| b2362 | yfdS | +0.3 | 1.4 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b0041 | fixA | +0.3 | 1.8 | probable flavoprotein subunit, carnitine metabolism (VIMSS) | compare |
| b2147 | yeiA | +0.3 | 1.8 | putative oxidoreductase (VIMSS) | compare |
| b1622 | malY | +0.3 | 1.4 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b1441 | ydcT | +0.3 | 1.1 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2622 | intA | +0.3 | 1.7 | CP4-57 prophage; integrase (NCBI) | compare |
| b4369 | leuP | +0.3 | 0.7 | tRNA-Leu (NCBI) | compare |
| b1245 | oppC | +0.3 | 1.7 | oligopeptide transporter subunit (NCBI) | compare |
| b2352 | yfdI | +0.3 | 0.5 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b0870 | ltaE | +0.3 | 1.5 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |