Experiment set22IT052 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
PP_1898 -4.6 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4099 -4.5 -38.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3417 -4.4 -6.6 D-gluconate transporter compare
PP_1650 -4.3 -22.0 Sensor protein GacS compare
PP_1079 -4.2 -8.2 Ornithine carbamoyltransferase compare
PP_3511 -3.9 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_3999 -3.8 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2328 -3.7 -8.3 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -3.7 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_5500 -3.7 -3.5 protein of unknown function compare
PP_5232 -3.6 -2.4 conserved protein of unknown function compare
PP_5350 -3.6 -5.4 Transcriptional regulator, RpiR family compare
PP_4782 -3.5 -6.6 Phosphomethylpyrimidine kinase compare
PP_1995 -3.5 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2327 -3.4 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5346 -3.4 -10.7 pyruvate carboxylase subunit B compare
PP_2681 -3.3 -2.4 coenzyme PQQ synthesis protein D compare
PP_0293 -3.3 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5328 -3.3 -2.2 putative phosphate transport system permease protein compare
PP_4909 -3.3 -7.9 phosphoserine phosphatase compare
PP_2371 -3.2 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0083 -3.2 -8.2 tryptophan synthase beta chain compare
PP_2001 -3.2 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_0184 -3.2 -7.0 Argininosuccinate lyase compare
PP_1985 -3.2 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_2402 -3.2 -3.5 putative Sensor histidine kinase compare
PP_1088 -3.2 -11.8 Argininosuccinate synthase compare
PP_5347 -3.1 -12.1 pyruvate carboxylase subunit A compare
PP_4890 -3.1 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4785 -3.0 -4.5 conserved exported protein of unknown function compare
PP_1231 -3.0 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1912 -3.0 -7.2 Phosphate acyltransferase compare
PP_1986 -3.0 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_5015 -3.0 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4902 -2.9 -3.9 Oligoribonuclease compare
PP_4679 -2.9 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -2.8 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2348 -2.8 -4.8 Sensor histidine kinase compare
PP_4726 -2.8 -3.4 Chaperone protein DnaJ compare
PP_1988 -2.8 -6.9 3-isopropylmalate dehydrogenase compare
PP_4678 -2.8 -13.2 Ketol-acid reductoisomerase compare
PP_1428 -2.8 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_0364 -2.8 -10.2 pimeloyl-[acp] methyl ester esterase compare
PP_1444 -2.8 -9.7 quinoprotein glucose dehydrogenase compare
PP_0082 -2.7 -7.8 tryptophan synthase alpha chain compare
PP_2370 -2.7 -4.0 conserved protein of unknown function compare
PP_5098 -2.7 -6.7 methionine biosynthesis protein MetW compare
PP_1022 -2.7 -6.7 glucose 6-phosphate-1-dehydrogenase compare
PP_4004 -2.6 -4.5 DNA translocase FtsK compare
PP_5348 -2.6 -8.8 Transcriptional regulator, LysR family compare
PP_1233 -2.6 -4.8 sulfurtransferase compare
PP_0417 -2.6 -14.2 Anthranilate synthase component 1 compare
PP_0966 -2.5 -8.2 Histidinol dehydrogenase compare
PP_5097 -2.5 -11.5 homoserine O-acetyltransferase compare
PP_4828 -2.5 -1.8 Precorrin-8X methylmutase compare
PP_5104 -2.5 -8.1 thiazole synthase compare
PP_0377 -2.5 -2.4 coenzyme PQQ synthesis protein D compare
PP_0787 -2.5 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0566 -2.5 -1.5 translation-related factor compare
PP_4561 -2.4 -1.3 stress response protein compare
PP_4680 -2.4 -11.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -2.4 -8.2 Anthranilate phosphoribosyltransferase compare
PP_0965 -2.4 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5303 -2.4 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5128 -2.4 -7.1 Dihydroxy-acid dehydratase compare
PP_0166 -2.4 -10.7 HlyD family secretion protein compare
PP_5185 -2.4 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0168 -2.4 -17.2 putative surface adhesion protein compare
PP_0290 -2.3 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0065 -2.3 -4.7 NAD-binding component of TrK potassium transporter compare
PP_0366 -2.3 -6.5 dethiobiotin synthetase compare
PP_4984 -2.3 -8.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0547 -2.3 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0165 -2.3 -13.4 GGDEF domain protein compare
PP_1778 -2.3 -7.1 Lipopolysaccharide ABC export system, permease protein compare
PP_0368 -2.3 -9.6 putative Acyl-CoA dehydrogenase compare
PP_2052 -2.3 -8.3 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_0378 -2.3 -8.6 Pyrroloquinoline-quinone synthase compare
PP_4519 -2.3 -12.7 Agglutination protein compare
PP_0363 -2.3 -11.9 8-amino-7-oxononanoate synthase compare
PP_0362 -2.2 -10.4 Biotin synthase compare
PP_0289 -2.2 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4804 -2.2 -2.5 RlpA-like lipoprotein compare
PP_4699 -2.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5014 -2.2 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_5038 -2.2 -3.6 conserved lipoprotein of unknown function compare
PP_0167 -2.2 -14.3 Toxin secretion ATP-binding protein compare
PP_0292 -2.2 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0376 -2.2 -8.0 Coenzyme PQQ synthesis protein E compare
PP_4700 -2.2 -2.5 pantothenate synthetase compare
PP_2253 -2.1 -1.9 Transcriptional regulator, GntR family compare
PP_0127 -2.1 -3.4 Thiol:disulfide interchange protein compare
PP_t12 -2.1 -1.3 tRNA-Thr compare
PP_4922 -2.1 -9.0 Phosphomethylpyrimidine synthase compare
PP_2168 -2.1 -7.7 Transaldolase compare
PP_1734 -2.1 -3.6 Probable septum site-determining protein MinC compare
PP_1733 -2.1 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0422 -2.0 -5.1 Indole-3-glycerol phosphate synthase compare
PP_0365 -2.0 -8.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5329 -2.0 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2136 -2.0 -5.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2137 -2.0 -2.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_3105 -2.0 -2.7 conserved membrane protein of unknown function compare
PP_0291 -2.0 -2.4 conserved protein of unknown function compare
PP_4271 -2.0 -1.2 conserved protein of unknown function compare
PP_3726 -1.9 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_1623 -1.9 -7.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_5706 -1.9 -2.7 Sec translocation complex - SecG subunit compare
PP_0420 -1.9 -8.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0164 -1.9 -5.3 conserved protein of unknown function compare
PP_4696 -1.9 -4.3 Nitrogen regulation protein NR(I) compare
PP_4994 -1.9 -2.8 conserved protein of unknown function compare
PP_2132 -1.9 -4.6 Universal stress protein compare
PP_2217 -1.9 -2.2 enoyl-CoA hydratase compare
PP_5075 -1.8 -10.3 glutamate synthase (NADPH) beta subunit compare
PP_3821 -1.8 -7.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1304 -1.8 -7.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2121 -1.7 -2.3 putative Lipoprotein compare
PP_4964 -1.7 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4304 -1.7 -7.7 Cation transporter, VIC family conserved
PP_0406 -1.7 -2.4 Nucleotidyltransferase family protein compare
PP_3411 -1.7 -1.1 conserved protein of unknown function compare
PP_0379 -1.7 -5.5 Coenzyme PQQ synthesis protein B compare
PP_1783 -1.7 -2.4 dTDP-glucose pyrophosphorylase compare
PP_0888 -1.7 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_2793 -1.7 -1.4 Acyl-CoA dehydrogenase family protein compare
PP_1348 -1.6 -3.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5327 -1.6 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_4098 -1.6 -1.9 UvrABC system protein C compare
PP_5289 -1.6 -2.9 Acetylglutamate kinase compare
PP_4338 -1.6 -5.4 Chemotaxis histidine kinase CheA compare
PP_5155 -1.6 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0048 -1.5 -1.3 conserved protein of unknown function compare
PP_1826 -1.5 -1.8 Hydrolase, isochorismatase family compare
PP_4695 -1.5 -7.7 Sensory box histidine kinase compare
PP_0381 -1.5 -4.4 Coenzyme PQQ synthesis protein F compare
PP_0905 -1.5 -1.7 conserved exported protein of unknown function compare
PP_4129 -1.5 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4332 -1.5 -2.5 Chemotaxis protein CheW compare
PP_1303 -1.5 -5.2 Sulfate adenylyltransferase subunit 2 compare
PP_1025 -1.5 -5.8 2-isopropylmalate synthase compare
PP_1217 -1.5 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5035 -1.5 -4.7 Histidine utilization repressor compare
PP_4693 -1.4 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_1824 -1.4 -1.3 Smr domain protein compare
PP_0435 -1.4 -5.2 Peptidase, M23/M37 family compare
PP_0630 -1.4 -1.1 DNA gyrase inhibitor YacG compare
PP_5320 -1.4 -6.0 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_5217 -1.4 -6.6 Polyphosphate kinase compare
PP_0138 -1.4 -6.3 conserved membrane protein of unknown function compare
PP_4895 -1.4 -2.0 tRNA dimethylallyltransferase compare
PP_2714 -1.4 -4.6 Sensor histidine kinase compare
PP_1656 -1.4 -5.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_0612 -1.4 -6.6 FAD-dependent glycine/D-amino acid oxidase compare
PP_4373 -1.4 -6.5 Transcriptional regulator FleQ compare
PP_5076 -1.3 -9.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_4122 -1.3 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3409 -1.3 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_5216 -1.3 -1.5 exopolyphosphatase compare
PP_3946 -1.3 -1.5 HTH-type transcriptional repressor NicR compare
PP_5644 -1.3 -2.5 conserved membrane protein of unknown function compare
PP_5095 -1.3 -1.1 pyrroline-5-carboxylate reductase compare
PP_5658 -1.3 -2.0 protein of unknown function compare
PP_4471 -1.2 -3.0 Magnesium transporter compare
PP_5583 -1.2 -1.5 conserved protein of unknown function compare
PP_4058 -1.2 -5.7 1,4-alpha-glucan branching enzyme compare
PP_4223 -1.2 -1.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4340 -1.2 -3.5 response regulator for chemotactic signal transduction compare
PP_3239 -1.2 -2.5 putative cointegrate resolution protein T Tn4652 compare
PP_3603 -1.2 -4.0 Transcriptional regulator, GntR family compare
PP_4054 -1.2 -1.6 conserved protein of unknown function compare
PP_2152 -1.2 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_0809 -1.2 -5.0 disulfide bond formation protein B compare
PP_2073 -1.2 -3.3 Acetyltransferase, GNAT family compare
PP_5321 -1.2 -5.1 two-component system sensory histidine kinase compare
PP_4993 -1.2 -2.4 Glutathione synthetase compare
PP_0214 -1.2 -4.4 4-aminobutyrate aminotransferase compare
PP_5183 -1.2 -3.9 glutamylpolyamine synthetase compare
PP_1269 -1.2 -1.0 Universal stress protein family compare
PP_3508 -1.2 -3.2 Protein CobW compare
PP_5640 -1.2 -2.4 conserved protein of unknown function compare
PP_4830 -1.2 -3.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_5230 -1.2 -2.0 Tyrosine recombinase XerC compare
PP_3938 -1.1 -1.6 conserved protein of unknown function compare
PP_0725 -1.1 -2.5 conserved hypothetical TPR repeat protein compare
PP_0914 -1.1 -5.3 GGDEF domain protein compare
PP_3043 -1.1 -1.2 conserved protein of unknown function compare
PP_5007 -1.1 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1779 -1.1 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3398 -1.1 -1.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2880 -1.1 -2.2 Transcriptional regulator, TetR family compare
PP_0980 -1.1 -3.3 Probable cytosol aminopeptidase compare
PP_1215 -1.1 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_5598 -1.1 -1.9 conserved protein of unknown function compare
PP_2203 -1.0 -1.5 conserved protein of unknown function compare
PP_5430 -1.0 -2.1 protein of unknown function compare
PP_1505 -1.0 -5.5 Phosphoenolpyruvate carboxylase compare
PP_1878 -1.0 -4.5 conserved protein of unknown function compare
PP_0401 -1.0 -1.7 Ribosomal RNA small subunit methyltransferase A compare


Specific Phenotypes

For 8 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms