Experiment set22IT009 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1898 -7.1 -4.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0293 -6.5 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -5.7 -9.6 3-isopropylmalate dehydrogenase compare
PP_4890 -5.6 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4994 -5.5 -8.1 conserved protein of unknown function compare
PP_3417 -5.3 -7.5 D-gluconate transporter compare
PP_0184 -5.3 -6.3 Argininosuccinate lyase compare
PP_5155 -5.2 -6.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -5.2 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -5.0 -4.9 Acetylglutamate kinase compare
PP_1986 -4.9 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_5347 -4.9 -11.4 pyruvate carboxylase subunit A compare
PP_0083 -4.8 -8.1 tryptophan synthase beta chain compare
PP_0966 -4.8 -12.8 Histidinol dehydrogenase compare
PP_1995 -4.8 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4680 -4.7 -16.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -4.7 -8.0 Anthranilate phosphoribosyltransferase compare
PP_0965 -4.7 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -4.7 -10.2 methionine biosynthesis protein MetW compare
PP_0290 -4.7 -9.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -4.7 -12.8 Argininosuccinate synthase compare
PP_5346 -4.6 -10.3 pyruvate carboxylase subunit B compare
PP_1778 -4.6 -10.5 Lipopolysaccharide ABC export system, permease protein compare
PP_0420 -4.6 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1231 -4.5 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -4.5 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_t29 -4.5 -2.5 tRNA-Ala compare
PP_2327 -4.4 -6.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2001 -4.4 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4678 -4.4 -15.3 Ketol-acid reductoisomerase compare
PP_4099 -4.4 -26.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4679 -4.4 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1650 -4.4 -27.3 Sensor protein GacS compare
PP_2371 -4.3 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0082 -4.3 -8.3 tryptophan synthase alpha chain compare
PP_0967 -4.3 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -4.3 -13.2 homoserine O-acetyltransferase compare
PP_5075 -4.3 -13.1 glutamate synthase (NADPH) beta subunit compare
PP_3511 -4.3 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_5348 -4.3 -9.8 Transcriptional regulator, LysR family compare
PP_1985 -4.3 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_5185 -4.2 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4902 -4.2 -2.9 Oligoribonuclease compare
PP_3999 -4.2 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0417 -3.9 -16.1 Anthranilate synthase component 1 compare
PP_1912 -3.9 -5.9 Phosphate acyltransferase compare
PP_1233 -3.9 -5.3 sulfurtransferase compare
PP_0422 -3.9 -5.5 Indole-3-glycerol phosphate synthase compare
PP_5015 -3.9 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4909 -3.7 -8.2 phosphoserine phosphatase compare
PP_5076 -3.6 -16.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_2328 -3.6 -7.9 Phosphoadenosine phosphosulfate reductase compare
PP_5104 -3.5 -8.5 thiazole synthase compare
PP_4699 -3.5 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0165 -3.5 -14.0 GGDEF domain protein compare
PP_0291 -3.5 -3.5 conserved protein of unknown function compare
PP_5303 -3.5 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1468 -3.4 -2.5 Tyrosine recombinase XerD compare
PP_5014 -3.3 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_2414 -3.3 -2.5 conserved exported protein of unknown function compare
PP_0167 -3.3 -14.9 Toxin secretion ATP-binding protein compare
PP_2168 -3.3 -10.3 Transaldolase compare
PP_2433 -3.3 -3.0 conserved protein of unknown function compare
PP_4696 -3.3 -6.2 Nitrogen regulation protein NR(I) compare
PP_2145 -3.2 -3.8 beta-N-acetylglucosaminidase compare
PP_4519 -3.2 -10.9 Agglutination protein compare
PP_5054 -3.2 -3.0 glutaredoxin 3 compare
PP_2136 -3.2 -5.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4126 -3.2 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_4129 -3.1 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2402 -3.1 -3.5 putative Sensor histidine kinase compare
PP_5217 -3.0 -10.6 Polyphosphate kinase compare
PP_1079 -3.0 -6.0 Ornithine carbamoyltransferase compare
PP_4004 -2.9 -4.8 DNA translocase FtsK compare
PP_0368 -2.9 -10.5 putative Acyl-CoA dehydrogenase compare
PP_0166 -2.8 -8.7 HlyD family secretion protein compare
PP_0364 -2.8 -7.6 pimeloyl-[acp] methyl ester esterase compare
PP_0168 -2.8 -14.9 putative surface adhesion protein compare
PP_4340 -2.7 -3.3 response regulator for chemotactic signal transduction compare
PP_4338 -2.7 -7.5 Chemotaxis histidine kinase CheA compare
PP_0363 -2.7 -10.5 8-amino-7-oxononanoate synthase compare
PP_5128 -2.7 -6.2 Dihydroxy-acid dehydratase compare
PP_1428 -2.7 -1.8 Sigma factor AlgU negative regulatory protein compare
PP_2348 -2.7 -5.2 Sensor histidine kinase compare
PP_0735 -2.6 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_4785 -2.6 -4.3 conserved exported protein of unknown function compare
PP_1826 -2.6 -3.0 Hydrolase, isochorismatase family compare
PP_0365 -2.6 -7.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0366 -2.6 -5.1 dethiobiotin synthetase compare
PP_5393 -2.6 -1.3 putative metal-binding chaperone compare
PP_4984 -2.5 -7.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_5001 -2.5 -2.9 protease HslVU, ATPase component compare
PP_1198 -2.5 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5095 -2.5 -1.4 pyrroline-5-carboxylate reductase compare
PP_1025 -2.4 -6.6 2-isopropylmalate synthase compare
PP_0362 -2.4 -8.7 Biotin synthase compare
PP_1022 -2.4 -5.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2052 -2.4 -9.1 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_2714 -2.4 -8.0 Sensor histidine kinase compare
PP_2388 -2.3 -3.4 Transporter, LysE family compare
PP_2302 -2.3 -6.5 DNA-binding, ATP-dependent protease compare
PP_1678 -2.3 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0292 -2.2 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4364 -2.2 -2.7 putative Anti-sigma F factor antagonist compare
PP_0957 -2.2 -1.7 D-arabinose 5-phosphate isomerase compare
PP_2497 -2.2 -2.5 conserved protein of unknown function compare
PP_5327 -2.2 -4.5 putative phosphate ABC transporter, permease subunit compare
PP_4131 -2.1 -5.9 NADH-quinone oxidoreductase subunit N compare
PP_3411 -2.1 -1.9 conserved protein of unknown function compare
PP_1348 -2.1 -6.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5500 -2.1 -3.6 protein of unknown function compare
PP_4268 -2.1 -1.5 nucleoid-associated broad specificity regulator compare
PP_1054 -2.1 -2.0 Type II secretion pathway protein XcpZ compare
PP_4993 -2.1 -4.5 Glutathione synthetase compare
PP_4782 -2.1 -3.7 Phosphomethylpyrimidine kinase compare
PP_4120 -2.0 -4.3 NADH-quinone oxidoreductase subunit B compare
PP_5310 -2.0 -5.7 junction-specific ATP-dependent DNA helicase compare
PP_4943 -2.0 -2.3 putative Glycosyl transferase compare
PP_4471 -2.0 -3.1 Magnesium transporter compare
PP_4517 -2.0 -1.4 conserved protein of unknown function compare
PP_2403 -2.0 -1.8 Chemotaxis protein CheY compare
PP_5232 -2.0 -2.2 conserved protein of unknown function compare
PP_1623 -2.0 -6.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_4922 -2.0 -8.1 Phosphomethylpyrimidine synthase compare
PP_4392 -1.9 -6.5 chemotaxis protein methyltransferase compare
PP_0547 -1.9 -4.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1309 -1.9 -3.9 conserved exported protein of unknown function compare
PP_0401 -1.9 -3.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4804 -1.9 -3.2 RlpA-like lipoprotein compare
PP_1217 -1.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5571 -1.9 -1.5 conserved protein of unknown function compare
PP_5145 -1.8 -11.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5331 -1.8 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_0164 -1.8 -4.3 conserved protein of unknown function compare
PP_2137 -1.8 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_1493 -1.8 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5090 -1.7 -2.4 putative cell division protein compare
PP_2756 -1.7 -2.1 conserved protein of unknown function compare
PP_1068 -1.7 -2.2 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2313 -1.7 -2.3 conserved membrane protein of unknown function compare
PP_0719 -1.7 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5507 -1.7 -3.1 protein of unknown function compare
PP_0435 -1.7 -6.2 Peptidase, M23/M37 family compare
PP_0001 -1.6 -1.3 probable chromosome-partitioning protein compare
PP_5350 -1.6 -2.7 Transcriptional regulator, RpiR family compare
PP_4693 -1.6 -4.1 RNA polymerase-binding transcription factor DksA compare
PP_3580 -1.6 -1.6 conserved protein of unknown function compare
PP_1994 -1.6 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_1656 -1.6 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2253 -1.6 -2.5 Transcriptional regulator, GntR family compare
PP_2370 -1.6 -1.9 conserved protein of unknown function compare
PP_1444 -1.6 -8.4 quinoprotein glucose dehydrogenase compare
PP_5706 -1.5 -2.0 Sec translocation complex - SecG subunit compare
PP_4880 -1.5 -6.9 exoribonuclease R compare
PP_4387 -1.5 -1.9 conserved exported protein of unknown function compare
PP_4332 -1.5 -3.7 Chemotaxis protein CheW compare
PP_4829 -1.5 -1.8 putative precorrin-3B synthase compare
PP_2592 -1.4 -3.0 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1654 -1.4 -2.1 cysteine synthase B compare
PP_4561 -1.4 -0.9 stress response protein compare
PP_4695 -1.4 -6.3 Sensory box histidine kinase compare
PP_5007 -1.4 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0065 -1.4 -2.2 NAD-binding component of TrK potassium transporter compare
PP_4363 -1.4 -5.0 Sensor histidine kinase/response regulator compare
PP_3508 -1.4 -2.2 Protein CobW compare
PP_3603 -1.4 -3.5 Transcriptional regulator, GntR family compare
PP_2132 -1.4 -3.9 Universal stress protein compare
PP_1304 -1.4 -4.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0405 -1.4 -6.2 conserved protein of unknown function compare
PP_2390 -1.4 -5.8 Transcriptional regulator, LysR family compare
PP_4121 -1.4 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2375 -1.4 -7.7 cobalamin-dependent methionine synthase compare
PP_3506 -1.3 -3.4 Magnesium chelatase, subunit ChII compare
PP_4977 -1.3 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_5429 -1.3 -2.1 protein of unknown function compare
PP_1467 -1.3 -5.9 NhaP-type Na+(K+)/H+ antiporter compare
PP_5SB -1.3 -2.4 5S ribosomal RNA compare
PP_1681 -1.3 -6.3 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4826 -1.3 -3.6 Precorrin-3B C17-methyltransferase compare
PP_0616 -1.3 -2.1 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_1673 -1.3 -4.4 cobyrinate a,c-diamide synthase compare
PP_5597 -1.3 -2.8 conserved protein of unknown function compare
PP_5575 -1.3 -1.5 conserved protein of unknown function compare
PP_0630 -1.3 -1.0 DNA gyrase inhibitor YacG compare
PP_4109 -1.3 -1.2 conserved protein of unknown function compare
PP_3519 -1.3 -0.9 putative Lipoprotein compare
PP_1675 -1.2 -5.0 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1876 -1.2 -3.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_5329 -1.2 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4362 -1.2 -2.1 conserved protein of unknown function compare
PP_0378 -1.2 -4.4 Pyrroloquinoline-quinone synthase compare
PP_1779 -1.2 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1677 -1.2 -2.9 Adenosyl-cobyric acid synthase compare
PP_4848 -1.2 -1.9 Curved DNA-binding protein compare
PP_2002 -1.2 -2.6 putative enzyme compare
PP_1491 -1.1 -2.9 CheW domain protein compare
PP_5146 -1.1 -5.3 RNA pyrophosphohydrolase compare
PP_3792 -1.1 -1.8 conserved protein of unknown function compare
PP_4964 -1.1 -2.0 D-erythrose 4-phosphate dehydrogenase compare


Specific Phenotypes

For 8 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms